data_1OHM # _entry.id 1OHM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OHM PDBE EBI-12621 WWPDB D_1290012621 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1OG7 unspecified 'THREE-DIMENSIONAL STRUCTURE IN LIPID MICELLES OF THE PEDIOCIN-LIKE ANTIMICROBIAL PEPTIDE SAKACIN P.' PDB 1OHN unspecified 'THREE-DIMENSIONAL STRUCTURE IN LIPID MICELLES OF THE PEDIOCIN-LIKE ANTIMICROBIAL PEPTIDE SAKACIN P.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OHM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-05-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Uteng, M.' 1 'Hauge, H.H.' 2 'Markwick, P.R.' 3 'Fimland, G.' 4 'Mantzilas, D.' 5 'Nissen-Meyer, J.' 6 'Muhle-Goll, C.' 7 # _citation.id primary _citation.title ;Three-Dimensional Structure in Lipid Micelles of the Pediocin-Like Antimicrobial Peptide Sakacin P and a Sakacin P Variant that is Structurally Stabilized by an Inserted C-Terminal Disulfide Bridge ; _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 11417 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14516192 _citation.pdbx_database_id_DOI 10.1021/BI034572I # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Uteng, M.' 1 primary 'Hauge, H.H.' 2 primary 'Markwick, P.R.' 3 primary 'Fimland, G.' 4 primary 'Mantzilas, D.' 5 primary 'Nissen-Meyer, J.' 6 primary 'Muhle-Goll, C.' 7 # _cell.entry_id 1OHM _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OHM _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'BACTERIOCIN SAKACIN P' _entity.formula_weight 4534.000 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation YES _entity.pdbx_fragment ? _entity.details 'SAKACIN P VARIANT THAT IS STRUCTURALLY STABILIZED BY AN INSERTED C-TERMINAL DISULFIDE BRIDGE.' # _entity_name_com.entity_id 1 _entity_name_com.name 'SAKACIN 674' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KYYGNGVHCGKHSCTVDWGTAIGCIGNNAAANWATGGNAGWNKC _entity_poly.pdbx_seq_one_letter_code_can KYYGNGVHCGKHSCTVDWGTAIGCIGNNAAANWATGGNAGWNKC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 TYR n 1 3 TYR n 1 4 GLY n 1 5 ASN n 1 6 GLY n 1 7 VAL n 1 8 HIS n 1 9 CYS n 1 10 GLY n 1 11 LYS n 1 12 HIS n 1 13 SER n 1 14 CYS n 1 15 THR n 1 16 VAL n 1 17 ASP n 1 18 TRP n 1 19 GLY n 1 20 THR n 1 21 ALA n 1 22 ILE n 1 23 GLY n 1 24 CYS n 1 25 ILE n 1 26 GLY n 1 27 ASN n 1 28 ASN n 1 29 ALA n 1 30 ALA n 1 31 ALA n 1 32 ASN n 1 33 TRP n 1 34 ALA n 1 35 THR n 1 36 GLY n 1 37 GLY n 1 38 ASN n 1 39 ALA n 1 40 GLY n 1 41 TRP n 1 42 ASN n 1 43 LYS n 1 44 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LB790 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'LACTOBACILLUS SAKE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1599 _entity_src_gen.pdbx_gene_src_variant LB790/PGF10 _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'LACTOBACILLUS SAKE' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1599 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain LB790 _entity_src_gen.pdbx_host_org_variant LB790/PGF10 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PMG36E _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGF10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SAKP_LACSK 1 ? ? P35618 ? 2 PDB 1OHM 1 ? ? 1OHM ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OHM A 1 ? 43 ? P35618 19 ? 61 ? 1 43 2 2 1OHM A 44 ? 44 ? 1OHM 44 ? 44 ? 44 44 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1OHM CYS A 24 ? UNP P35618 ASN 42 'engineered mutation' 24 1 1 1OHM CYS A 44 ? PDB 1OHM ? ? insertion 44 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type 'NOESY TOCSY' _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 2.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '250 MM DPC/10% D2O/ 0.1% TFA/1MM PEPTIDE' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1OHM _pdbx_nmr_refine.method 'MOLECULAR DYNAMICS/ SIMULATED ANNEALING' _pdbx_nmr_refine.details 'AMBER 6, SAN FRANCISCO, UNIVERSITY OF CALIFORNIA, 1999.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1OHM _pdbx_nmr_details.text ;THE STRUCTURES WERE DETERMINED USING A COMBINATION OF 1H NMR SPECTROSCOPIC METHODS FOLLOWED BY DISTANCE GEOMETRY/SIMULATED ANNEALING CALCULATIONS. ; # _pdbx_nmr_ensemble.entry_id 1OHM _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAIN VIOLATION AND OVERALL ENERGY' # _pdbx_nmr_representative.entry_id 1OHM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement AMBER 6 'CASE, D.A., PEARLMAN, D.A., CALDWELL, III, J.C., ET AL.' 1 'structure solution' ARIA ? ? 2 'structure solution' AMBER ? ? 3 # _exptl.entry_id 1OHM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1OHM _struct.title 'Sakacin P variant that is structurally stabilized by an inserted C-terminal disulfide bridge.' _struct.pdbx_descriptor 'BACTERIOCIN SAKACIN P' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OHM _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, PEDIOCIN-LIKE BACTERIOCINS, ANTIMICROBIAL PEPTIDES, SAKACIN ANTIBIOTIC, BACTERIOCIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id TRP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 18 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TRP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 33 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id TRP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 18 _struct_conf.end_auth_comp_id TRP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 33 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 9 A CYS 14 1_555 ? ? ? ? ? ? ? 2.009 ? disulf2 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 24 A CYS 44 1_555 ? ? ? ? ? ? ? 2.048 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 9 A . ? CYS 9 A GLY 10 A ? GLY 10 A 2 10.04 2 THR 15 A . ? THR 15 A VAL 16 A ? VAL 16 A 5 4.27 3 ASN 32 A . ? ASN 32 A TRP 33 A ? TRP 33 A 5 2.79 4 HIS 12 A . ? HIS 12 A SER 13 A ? SER 13 A 10 5.93 # _database_PDB_matrix.entry_id 1OHM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OHM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 CYS 44 44 44 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_entry_details.entry_id 1OHM _pdbx_entry_details.compound_details ;ENGINEERED MUTATION IN CHAIN A: CYS 42 TO ASN 42 SAKACIN P VARIANT THAT IS STRUCTURALLY STABILIZED BY AN INSERTED C-TERMINAL DISULFIDE BRIDGE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE SEQUENCE IS DESCRIBED IN J. BACTERIOL. 182, 2643-2648' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 9 ? ? CB A CYS 9 ? ? SG A CYS 9 ? ? 122.55 114.20 8.35 1.10 N 2 2 CB A CYS 9 ? ? CA A CYS 9 ? ? C A CYS 9 ? ? 118.96 111.50 7.46 1.20 N 3 5 C A THR 15 ? ? N A VAL 16 ? ? CA A VAL 16 ? ? 137.56 121.70 15.86 2.50 Y 4 9 C A GLY 37 ? ? N A ASN 38 ? ? CA A ASN 38 ? ? 137.05 121.70 15.35 2.50 Y 5 10 C A HIS 12 ? ? N A SER 13 ? ? CA A SER 13 ? ? 137.11 121.70 15.41 2.50 Y 6 10 CA A VAL 16 ? ? CB A VAL 16 ? ? CG1 A VAL 16 ? ? 121.27 110.90 10.37 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 7 ? ? 51.39 150.04 2 1 CYS A 9 ? ? -153.93 -128.63 3 1 SER A 13 ? ? 172.62 -44.97 4 1 CYS A 14 ? ? -74.42 -74.01 5 1 THR A 15 ? ? 52.89 -127.44 6 1 VAL A 16 ? ? 48.82 95.51 7 1 ALA A 29 ? ? -56.79 -72.97 8 1 TRP A 33 ? ? -178.63 -126.04 9 1 THR A 35 ? ? -158.23 57.95 10 1 ASN A 38 ? ? -153.62 7.30 11 1 ALA A 39 ? ? 52.63 19.98 12 1 ASN A 42 ? ? -164.52 3.72 13 2 CYS A 9 ? ? 144.20 -175.23 14 2 LYS A 11 ? ? -56.53 -5.24 15 2 TRP A 18 ? ? -68.88 23.45 16 2 CYS A 24 ? ? -52.96 -73.45 17 2 TRP A 33 ? ? 175.59 -135.24 18 2 THR A 35 ? ? 139.51 86.84 19 2 ASN A 42 ? ? -53.25 -2.24 20 3 CYS A 14 ? ? 61.41 81.82 21 3 VAL A 16 ? ? -14.31 112.11 22 3 TRP A 33 ? ? 172.92 -122.30 23 3 ALA A 34 ? ? -145.13 -34.15 24 3 ALA A 39 ? ? -76.88 20.30 25 3 ASN A 42 ? ? -57.14 2.25 26 4 VAL A 7 ? ? 49.60 -95.96 27 4 HIS A 8 ? ? 97.07 99.11 28 4 LYS A 11 ? ? 61.46 -26.33 29 4 SER A 13 ? ? 172.47 -169.67 30 4 THR A 15 ? ? -142.86 -133.81 31 4 VAL A 16 ? ? -146.19 -1.19 32 4 ASP A 17 ? ? 102.34 -18.23 33 4 TRP A 18 ? ? -154.04 7.92 34 4 CYS A 24 ? ? -55.74 -74.08 35 4 TRP A 33 ? ? 146.04 -101.61 36 4 ALA A 34 ? ? -154.84 43.49 37 4 THR A 35 ? ? 56.09 79.86 38 4 ASN A 42 ? ? 147.49 8.26 39 4 LYS A 43 ? ? 1.28 82.38 40 5 TYR A 3 ? ? -34.77 114.60 41 5 ASN A 5 ? ? -141.07 -6.79 42 5 HIS A 8 ? ? -156.89 89.11 43 5 HIS A 12 ? ? -116.13 -124.69 44 5 CYS A 14 ? ? -128.32 -66.39 45 5 THR A 15 ? ? 54.04 -174.78 46 5 ALA A 29 ? ? -55.61 -72.67 47 5 TRP A 33 ? ? -153.35 -55.46 48 5 ASN A 38 ? ? -144.05 -48.62 49 5 ALA A 39 ? ? 58.90 -26.36 50 5 ASN A 42 ? ? -162.77 0.18 51 5 LYS A 43 ? ? -27.81 138.95 52 6 TYR A 2 ? ? 85.46 95.06 53 6 TYR A 3 ? ? -135.21 -69.06 54 6 VAL A 7 ? ? -20.84 136.20 55 6 HIS A 12 ? ? -102.35 -82.91 56 6 CYS A 14 ? ? 54.28 92.68 57 6 THR A 15 ? ? -121.64 -55.78 58 6 TRP A 18 ? ? -53.47 -6.28 59 6 TRP A 33 ? ? 157.86 -118.05 60 6 THR A 35 ? ? 118.84 100.49 61 6 ASN A 42 ? ? 149.66 25.34 62 6 LYS A 43 ? ? -24.34 108.21 63 7 ASN A 5 ? ? -118.29 -77.95 64 7 HIS A 8 ? ? 33.57 77.64 65 7 CYS A 9 ? ? -102.35 -86.20 66 7 CYS A 14 ? ? -66.12 -87.00 67 7 THR A 15 ? ? 61.01 -60.25 68 7 TRP A 33 ? ? 147.26 -106.33 69 7 ALA A 34 ? ? -165.00 -33.99 70 7 ASN A 42 ? ? -152.51 12.29 71 7 LYS A 43 ? ? 46.77 173.13 72 8 ASN A 5 ? ? -63.39 10.57 73 8 LYS A 11 ? ? -72.01 40.97 74 8 HIS A 12 ? ? -131.32 -118.20 75 8 CYS A 14 ? ? 62.95 86.71 76 8 CYS A 24 ? ? -56.48 -70.20 77 8 TRP A 33 ? ? 170.80 -113.43 78 8 ALA A 34 ? ? -154.19 -39.04 79 8 ASN A 42 ? ? 153.13 20.28 80 8 LYS A 43 ? ? -15.05 94.50 81 9 ASN A 5 ? ? 59.84 -22.91 82 9 HIS A 12 ? ? -116.33 -87.70 83 9 CYS A 14 ? ? 65.66 158.97 84 9 TRP A 18 ? ? 101.18 -54.33 85 9 TRP A 33 ? ? 175.51 -123.83 86 9 ASN A 38 ? ? 127.63 -32.30 87 9 ALA A 39 ? ? -159.11 -4.55 88 9 ASN A 42 ? ? 170.57 21.70 89 9 LYS A 43 ? ? -32.99 103.13 90 10 VAL A 7 ? ? -46.50 157.75 91 10 SER A 13 ? ? -84.30 -71.46 92 10 ASP A 17 ? ? 132.36 -47.23 93 10 TRP A 33 ? ? 141.12 -105.38 94 10 THR A 35 ? ? 102.56 66.20 95 10 ASN A 42 ? ? -152.20 7.08 96 10 LYS A 43 ? ? 62.95 -27.31 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL A 16 ? ? ASP A 17 ? ? 138.76 2 1 ASN A 42 ? ? LYS A 43 ? ? -92.42 3 2 THR A 35 ? ? GLY A 36 ? ? 147.79 4 2 ASN A 42 ? ? LYS A 43 ? ? 139.93 5 3 VAL A 16 ? ? ASP A 17 ? ? 119.72 6 3 ASN A 32 ? ? TRP A 33 ? ? -137.71 7 3 THR A 35 ? ? GLY A 36 ? ? 143.80 8 3 ASN A 42 ? ? LYS A 43 ? ? 141.24 9 5 ASN A 42 ? ? LYS A 43 ? ? -114.84 10 6 CYS A 14 ? ? THR A 15 ? ? -148.78 11 6 VAL A 16 ? ? ASP A 17 ? ? 143.77 12 6 ASN A 32 ? ? TRP A 33 ? ? -129.59 13 7 VAL A 16 ? ? ASP A 17 ? ? 141.02 14 7 GLY A 36 ? ? GLY A 37 ? ? 142.57 15 7 ASN A 42 ? ? LYS A 43 ? ? -141.74 16 7 LYS A 43 ? ? CYS A 44 ? ? 125.05 17 8 VAL A 16 ? ? ASP A 17 ? ? 118.74 18 8 ASN A 32 ? ? TRP A 33 ? ? -147.90 19 8 THR A 35 ? ? GLY A 36 ? ? 148.21 20 8 GLY A 36 ? ? GLY A 37 ? ? 146.91 21 9 THR A 35 ? ? GLY A 36 ? ? 147.12 22 9 ASN A 42 ? ? LYS A 43 ? ? -104.84 23 10 CYS A 14 ? ? THR A 15 ? ? -138.72 24 10 THR A 15 ? ? VAL A 16 ? ? -149.10 25 10 LYS A 43 ? ? CYS A 44 ? ? -124.87 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 2 _pdbx_validate_planes.auth_comp_id HIS _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.091 _pdbx_validate_planes.type 'SIDE CHAIN' #