HEADER ELECTRON TRANSPORT 22-JUL-03 1OKD TITLE NMR-STRUCTURE OF TRYPAREDOXIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPAREDOXIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRITHIDIA FASCICULATA; SOURCE 3 ORGANISM_TAXID: 5656; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B(+)/TXN1H6 KEYWDS ELECTRON TRANSPORT, TRYPAREDOXIN, TRYPANOSOMATIDS, NMR SPECTROSCOPY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.KRUMME,H.BUDDE,H.-J.HECHT,U.MENGE,O.OHLENSCHLAGER,A.ROSS,J.WISSING, AUTHOR 2 V.WRAY,L.FLOHE REVDAT 4 17-JAN-18 1OKD 1 SOURCE JRNL REVDAT 3 24-FEB-09 1OKD 1 VERSN REVDAT 2 18-DEC-03 1OKD 1 JRNL REVDAT 1 28-AUG-03 1OKD 0 JRNL AUTH D.KRUMME,H.BUDDE,H.J.HECHT,U.MENGE,O.OHLENSCHLAGER,A.ROSS, JRNL AUTH 2 J.WISSING,V.WRAY,L.FLOHE JRNL TITL NMR STUDIES OF THE INTERACTION OF TRYPAREDOXIN WITH JRNL TITL 2 REDOX-INACTIVE SUBSTRATE HOMOLOGUES. JRNL REF BIOCHEMISTRY V. 42 14720 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14674746 JRNL DOI 10.1021/BI030112D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OKD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1290012152. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 HIS A 149 CA C O CB CG ND1 CD2 REMARK 470 HIS A 149 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 96 H LEU A 100 1.52 REMARK 500 O GLN A 139 H TRP A 142 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 16 -100.27 27.49 REMARK 500 1 LEU A 26 53.13 -117.94 REMARK 500 1 PRO A 42 -70.72 -74.90 REMARK 500 1 ARG A 44 87.89 -156.18 REMARK 500 1 THR A 47 -62.70 -173.29 REMARK 500 1 TRP A 70 38.09 -144.41 REMARK 500 1 LYS A 83 -71.56 -109.00 REMARK 500 1 MET A 84 122.42 -34.21 REMARK 500 1 TRP A 86 163.02 -45.13 REMARK 500 1 VAL A 106 103.44 -56.57 REMARK 500 1 ARG A 126 49.81 -88.04 REMARK 500 1 PHE A 140 -47.56 -27.93 REMARK 500 1 PRO A 141 4.45 -62.47 REMARK 500 1 TRP A 142 64.32 7.97 REMARK 500 1 LYS A 143 -162.12 -58.98 REMARK 500 1 ASP A 144 169.61 -47.24 REMARK 500 1 LEU A 147 51.48 -90.67 REMARK 500 2 GLU A 12 -52.93 -131.49 REMARK 500 2 ALA A 27 90.25 -10.64 REMARK 500 2 CYS A 40 164.22 -45.71 REMARK 500 2 PRO A 42 -79.88 -63.20 REMARK 500 2 CYS A 43 74.13 0.46 REMARK 500 2 ARG A 44 -43.80 -161.18 REMARK 500 2 THR A 47 -60.08 -173.36 REMARK 500 2 TRP A 70 37.37 -141.41 REMARK 500 2 LYS A 83 -146.24 -93.65 REMARK 500 2 MET A 84 110.35 36.44 REMARK 500 2 TRP A 86 162.89 -47.51 REMARK 500 2 VAL A 106 103.42 -54.32 REMARK 500 2 ASP A 121 141.38 -178.93 REMARK 500 2 THR A 125 41.55 -157.60 REMARK 500 2 ARG A 126 48.48 -175.37 REMARK 500 2 ASP A 134 78.10 -113.50 REMARK 500 2 PRO A 141 3.64 -61.71 REMARK 500 2 TRP A 142 65.03 5.00 REMARK 500 2 ASP A 144 -172.69 -60.11 REMARK 500 2 ALA A 145 108.24 -54.85 REMARK 500 2 PRO A 146 -167.85 -68.94 REMARK 500 2 LEU A 147 -79.87 -59.06 REMARK 500 3 PRO A 9 -169.95 -55.48 REMARK 500 3 ARG A 16 -88.04 -77.83 REMARK 500 3 LEU A 26 40.73 -97.95 REMARK 500 3 ARG A 44 98.99 -168.76 REMARK 500 3 TRP A 70 40.28 -146.89 REMARK 500 3 TYR A 80 -61.36 -108.23 REMARK 500 3 TRP A 86 167.25 -48.12 REMARK 500 3 VAL A 106 96.63 -54.44 REMARK 500 3 THR A 125 -54.85 -145.75 REMARK 500 3 ARG A 126 49.37 -80.96 REMARK 500 3 PRO A 141 3.97 -64.88 REMARK 500 REMARK 500 THIS ENTRY HAS 349 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EWX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE TRYPAREDOXIN I FROM CRITHIDIA REMARK 900 FASCICULATA REMARK 900 RELATED ID: 1EZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RECOMBINANT TRYPAREDOXIN I REMARK 900 RELATED ID: 1O7U RELATED DB: PDB REMARK 900 RADIATION DAMAGED TRYPAREDOXIN-I REMARK 900 RELATED ID: 1O85 RELATED DB: PDB REMARK 900 RADIATION-REDUCED TRYPAREDOXIN-I REMARK 900 RELATED ID: 1O8W RELATED DB: PDB REMARK 900 RADIATION-REDUCED TRYPARDOXIN-I REMARK 900 RELATED ID: 1O8X RELATED DB: PDB REMARK 900 MUTANT TRYPAREDOXIN-I CYS43ALA REMARK 900 RELATED ID: 1QK8 RELATED DB: PDB DBREF 1OKD A 1 146 UNP O96438 O96438 1 146 DBREF 1OKD A 147 154 PDB 1OKD 1OKD 147 154 SEQRES 1 A 154 MET SER GLY LEU ASP LYS TYR LEU PRO GLY ILE GLU LYS SEQRES 2 A 154 LEU ARG ARG GLY ASP GLY GLU VAL GLU VAL LYS SER LEU SEQRES 3 A 154 ALA GLY LYS LEU VAL PHE PHE TYR PHE SER ALA SER TRP SEQRES 4 A 154 CYS PRO PRO CYS ARG GLY PHE THR PRO GLN LEU ILE GLU SEQRES 5 A 154 PHE TYR ASP LYS PHE HIS GLU SER LYS ASN PHE GLU VAL SEQRES 6 A 154 VAL PHE CYS THR TRP ASP GLU GLU GLU ASP GLY PHE ALA SEQRES 7 A 154 GLY TYR PHE ALA LYS MET PRO TRP LEU ALA VAL PRO PHE SEQRES 8 A 154 ALA GLN SER GLU ALA VAL GLN LYS LEU SER LYS HIS PHE SEQRES 9 A 154 ASN VAL GLU SER ILE PRO THR LEU ILE GLY VAL ASP ALA SEQRES 10 A 154 ASP SER GLY ASP VAL VAL THR THR ARG ALA ARG ALA THR SEQRES 11 A 154 LEU VAL LYS ASP PRO GLU GLY GLU GLN PHE PRO TRP LYS SEQRES 12 A 154 ASP ALA PRO LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 2 LEU A 8 1 7 HELIX 2 2 LYS A 24 ALA A 27 5 4 HELIX 3 3 THR A 47 ASN A 62 1 16 HELIX 4 4 GLU A 73 ALA A 82 1 10 HELIX 5 5 PRO A 90 ALA A 92 5 3 HELIX 6 6 GLN A 93 ASN A 105 1 13 HELIX 7 7 ARG A 126 ASP A 134 1 9 SHEET 1 AA 2 LYS A 13 LEU A 14 0 SHEET 2 AA 2 VAL A 21 GLU A 22 -1 O VAL A 21 N LEU A 14 SHEET 1 AB 5 LEU A 87 ALA A 88 0 SHEET 2 AB 5 GLU A 64 THR A 69 1 O VAL A 65 N LEU A 87 SHEET 3 AB 5 LEU A 30 SER A 36 1 O LEU A 30 N GLU A 64 SHEET 4 AB 5 THR A 111 ASP A 116 -1 O THR A 111 N PHE A 35 SHEET 5 AB 5 VAL A 122 THR A 124 -1 N VAL A 123 O GLY A 114 SSBOND 1 CYS A 40 CYS A 43 1555 1555 2.03 CISPEP 1 ILE A 109 PRO A 110 1 0.13 CISPEP 2 ILE A 109 PRO A 110 2 0.07 CISPEP 3 ILE A 109 PRO A 110 3 0.07 CISPEP 4 ILE A 109 PRO A 110 4 0.22 CISPEP 5 ILE A 109 PRO A 110 5 0.09 CISPEP 6 ILE A 109 PRO A 110 6 0.10 CISPEP 7 ILE A 109 PRO A 110 7 0.19 CISPEP 8 ILE A 109 PRO A 110 8 0.21 CISPEP 9 ILE A 109 PRO A 110 9 0.13 CISPEP 10 ILE A 109 PRO A 110 10 0.15 CISPEP 11 ILE A 109 PRO A 110 11 0.19 CISPEP 12 ILE A 109 PRO A 110 12 0.10 CISPEP 13 ILE A 109 PRO A 110 13 0.28 CISPEP 14 ILE A 109 PRO A 110 14 0.12 CISPEP 15 ILE A 109 PRO A 110 15 0.21 CISPEP 16 ILE A 109 PRO A 110 16 0.14 CISPEP 17 ILE A 109 PRO A 110 17 0.13 CISPEP 18 ILE A 109 PRO A 110 18 0.20 CISPEP 19 ILE A 109 PRO A 110 19 0.10 CISPEP 20 ILE A 109 PRO A 110 20 0.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1