data_1OKR # _entry.id 1OKR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OKR PDBE EBI-13184 WWPDB D_1290013184 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OKR _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-07-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Garcia-Castellanos, R.' 1 'Marrero, A.' 2 'Mallorqui-Fernandez, G.' 3 'Potempa, J.' 4 'Coll, M.' 5 'Gomis-Ruth, F.X.' 6 # _citation.id primary _citation.title 'Three-Dimensional Structure of Meci: Molecular Basis for Transcriptional Regulation of Staphylococcal Methicillin Resistance' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 278 _citation.page_first 39897 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12881514 _citation.pdbx_database_id_DOI 10.1074/JBC.M307199200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garcia-Castellanos, R.' 1 ? primary 'Marrero, A.' 2 ? primary 'Mallorqui-Fernandez, G.' 3 ? primary 'Potempa, J.' 4 ? primary 'Coll, M.' 5 ? primary 'Gomis-Ruth, F.X.' 6 ? # _cell.entry_id 1OKR _cell.length_a 66.050 _cell.length_b 73.360 _cell.length_c 74.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OKR _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'METHICILLIN RESISTANCE REGULATORY PROTEIN MECI' 14812.003 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name MECI # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKY KTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKY KTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ASN n 1 4 LYS n 1 5 THR n 1 6 TYR n 1 7 GLU n 1 8 ILE n 1 9 SER n 1 10 SER n 1 11 ALA n 1 12 GLU n 1 13 TRP n 1 14 GLU n 1 15 VAL n 1 16 MET n 1 17 ASN n 1 18 ILE n 1 19 ILE n 1 20 TRP n 1 21 MET n 1 22 LYS n 1 23 LYS n 1 24 TYR n 1 25 ALA n 1 26 SER n 1 27 ALA n 1 28 ASN n 1 29 ASN n 1 30 ILE n 1 31 ILE n 1 32 GLU n 1 33 GLU n 1 34 ILE n 1 35 GLN n 1 36 MET n 1 37 GLN n 1 38 LYS n 1 39 ASP n 1 40 TRP n 1 41 SER n 1 42 PRO n 1 43 LYS n 1 44 THR n 1 45 ILE n 1 46 ARG n 1 47 THR n 1 48 LEU n 1 49 ILE n 1 50 THR n 1 51 ARG n 1 52 LEU n 1 53 TYR n 1 54 LYS n 1 55 LYS n 1 56 GLY n 1 57 PHE n 1 58 ILE n 1 59 ASP n 1 60 ARG n 1 61 LYS n 1 62 LYS n 1 63 ASP n 1 64 ASN n 1 65 LYS n 1 66 ILE n 1 67 PHE n 1 68 GLN n 1 69 TYR n 1 70 TYR n 1 71 SER n 1 72 LEU n 1 73 VAL n 1 74 GLU n 1 75 GLU n 1 76 SER n 1 77 ASP n 1 78 ILE n 1 79 LYS n 1 80 TYR n 1 81 LYS n 1 82 THR n 1 83 SER n 1 84 LYS n 1 85 ASN n 1 86 PHE n 1 87 ILE n 1 88 ASN n 1 89 LYS n 1 90 VAL n 1 91 TYR n 1 92 LYS n 1 93 GLY n 1 94 GLY n 1 95 PHE n 1 96 ASN n 1 97 SER n 1 98 LEU n 1 99 VAL n 1 100 LEU n 1 101 ASN n 1 102 PHE n 1 103 VAL n 1 104 GLU n 1 105 LYS n 1 106 GLU n 1 107 ASP n 1 108 LEU n 1 109 SER n 1 110 GLN n 1 111 ASP n 1 112 GLU n 1 113 ILE n 1 114 GLU n 1 115 GLU n 1 116 LEU n 1 117 ARG n 1 118 ASN n 1 119 ILE n 1 120 LEU n 1 121 ASN n 1 122 LYS n 1 123 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain N315 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STAPHYLOCOCCUS AUREUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MECI_STAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P26598 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OKR A 1 ? 123 ? P26598 1 ? 123 ? 1 123 2 1 1OKR B 1 ? 123 ? P26598 1 ? 123 ? 1 123 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1OKR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description ;THE DATASETS ARE PART OF A 3-THREE WAVELENGTH MAD EXPERIMENT. THE WAVELENGTH OF THE NATIVE DATASET IS 0.97625 ANG. THE DATASET CONTAINS 14159 UNIQUE REFLECTIONS ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.40 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20 MM TRIS-HCL PH 7.4, 0.2 M NACL AT 4 DEGREES.' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97625 1.0 2 0.97915 1.0 3 0.97926 1.0 4 0.96111 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97625,0.97915,0.97926, 0.96111' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1OKR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 66.100 _reflns.d_resolution_high 2.400 _reflns.number_obs 61498 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.06100 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 84.7 _reflns_shell.Rmerge_I_obs 0.50600 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.400 _reflns_shell.pdbx_redundancy 2.10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1OKR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13363 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 95.9 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.298 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.300 _refine.ls_number_reflns_R_free 753 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.895 _refine.B_iso_mean 30.79 _refine.aniso_B[1][1] 4.79000 _refine.aniso_B[2][2] -0.88000 _refine.aniso_B[3][3] -3.91000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ADDITIONAL REFINEMENT WAS PERFORMED USING CNS 1.1.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.359 _refine.pdbx_overall_ESU_R_Free 0.295 _refine.overall_SU_ML 0.221 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.736 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2051 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 2133 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 2097 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1883 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.561 1.954 ? 2805 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.880 3.000 ? 4436 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.198 5.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.114 0.200 ? 300 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2236 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 406 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 444 'X-RAY DIFFRACTION' ? r_nbd_other 0.230 0.200 ? 2054 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 1314 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.168 0.200 ? 44 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.097 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.334 0.200 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.101 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.499 1.500 ? 1206 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.122 2.000 ? 1962 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 6.017 3.000 ? 891 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 8.527 4.500 ? 843 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 747 _refine_ls_shell.R_factor_R_work 0.3520 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3920 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.882000 _struct_ncs_oper.matrix[1][2] -0.283000 _struct_ncs_oper.matrix[1][3] 0.376000 _struct_ncs_oper.matrix[2][1] -0.136000 _struct_ncs_oper.matrix[2][2] -0.612000 _struct_ncs_oper.matrix[2][3] -0.779000 _struct_ncs_oper.matrix[3][1] 0.450000 _struct_ncs_oper.matrix[3][2] -0.739000 _struct_ncs_oper.matrix[3][3] 0.501000 _struct_ncs_oper.vector[1] 27.06010 _struct_ncs_oper.vector[2] 83.20142 _struct_ncs_oper.vector[3] 34.85890 # _struct.entry_id 1OKR _struct.title 'Three-dimensional structure of S.aureus methicillin-resistance regulating transcriptional repressor MecI.' _struct.pdbx_descriptor 'METHICILLIN RESISTANCE REGULATORY PROTEIN MECI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OKR _struct_keywords.pdbx_keywords 'BACTERIAL ANTIBIOTIC RESISTANCE' _struct_keywords.text 'BACTERIAL ANTIBIOTIC RESISTANCE, MECI PROTEIN, TRANSCRIPTIONAL REGULATORY ELEMENT, DNA-BINDING PROTEIN, WINGED HELIX PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? LYS A 23 ? SER A 9 LYS A 23 1 ? 15 HELX_P HELX_P2 2 ALA A 27 ? LYS A 38 ? ALA A 27 LYS A 38 1 ? 12 HELX_P HELX_P3 3 SER A 41 ? LYS A 55 ? SER A 41 LYS A 55 1 ? 15 HELX_P HELX_P4 4 GLU A 74 ? TYR A 91 ? GLU A 74 TYR A 91 1 ? 18 HELX_P HELX_P5 5 GLY A 94 ? GLU A 106 ? GLY A 94 GLU A 106 1 ? 13 HELX_P HELX_P6 6 SER A 109 ? ASN A 121 ? SER A 109 ASN A 121 1 ? 13 HELX_P HELX_P7 7 SER B 9 ? LYS B 23 ? SER B 9 LYS B 23 1 ? 15 HELX_P HELX_P8 8 SER B 26 ? LYS B 38 ? SER B 26 LYS B 38 1 ? 13 HELX_P HELX_P9 9 SER B 41 ? LYS B 55 ? SER B 41 LYS B 55 1 ? 15 HELX_P HELX_P10 10 GLU B 74 ? TYR B 91 ? GLU B 74 TYR B 91 1 ? 18 HELX_P HELX_P11 11 GLY B 94 ? GLU B 106 ? GLY B 94 GLU B 106 1 ? 13 HELX_P HELX_P12 12 SER B 109 ? LYS B 122 ? SER B 109 LYS B 122 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel BA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 25 ? SER A 26 ? ALA A 25 SER A 26 AA 2 ILE A 66 ? SER A 71 ? ILE A 66 SER A 71 AA 3 ILE A 58 ? ASP A 63 ? ILE A 58 ASP A 63 BA 1 ILE B 58 ? ASP B 63 ? ILE B 58 ASP B 63 BA 2 ILE B 66 ? SER B 71 ? ILE B 66 SER B 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 25 ? N ALA A 25 O TYR A 69 ? O TYR A 69 AA 2 3 N TYR A 70 ? N TYR A 70 O ASP A 59 ? O ASP A 59 BA 1 2 N ASP B 63 ? N ASP B 63 O ILE B 66 ? O ILE B 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 1124' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE GOL B1123' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TRP A 20 ? TRP A 20 . ? 1_555 ? 2 AC1 3 SER A 71 ? SER A 71 . ? 1_555 ? 3 AC1 3 VAL A 73 ? VAL A 73 . ? 1_555 ? 4 AC2 1 GLU B 74 ? GLU B 74 . ? 1_555 ? # _database_PDB_matrix.entry_id 1OKR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OKR _atom_sites.fract_transf_matrix[1][1] 0.015140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013631 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013390 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 ASN 3 3 ? ? ? A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 LYS 123 123 123 LYS LYS A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ASP 2 2 2 ASP ASP B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 MET 16 16 16 MET MET B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 TRP 20 20 20 TRP TRP B . n B 1 21 MET 21 21 21 MET MET B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 TYR 24 24 24 TYR TYR B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 ASN 28 28 28 ASN ASN B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 ASP 39 39 39 ASP ASP B . n B 1 40 TRP 40 40 40 TRP TRP B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 THR 44 44 44 THR THR B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 THR 47 47 47 THR THR B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 THR 50 50 50 THR THR B . n B 1 51 ARG 51 51 51 ARG ARG B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 LYS 54 54 54 LYS LYS B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 PHE 57 57 57 PHE PHE B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 ASP 59 59 59 ASP ASP B . n B 1 60 ARG 60 60 60 ARG ARG B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 PHE 67 67 67 PHE PHE B . n B 1 68 GLN 68 68 68 GLN GLN B . n B 1 69 TYR 69 69 69 TYR TYR B . n B 1 70 TYR 70 70 70 TYR TYR B . n B 1 71 SER 71 71 71 SER SER B . n B 1 72 LEU 72 72 72 LEU LEU B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 SER 76 76 76 SER SER B . n B 1 77 ASP 77 77 77 ASP ASP B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 LYS 79 79 79 LYS LYS B . n B 1 80 TYR 80 80 80 TYR TYR B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 LYS 84 84 84 LYS LYS B . n B 1 85 ASN 85 85 85 ASN ASN B . n B 1 86 PHE 86 86 86 PHE PHE B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LYS 89 89 89 LYS LYS B . n B 1 90 VAL 90 90 90 VAL VAL B . n B 1 91 TYR 91 91 91 TYR TYR B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 GLY 93 93 93 GLY GLY B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 SER 97 97 97 SER SER B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 PHE 102 102 102 PHE PHE B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 GLU 106 106 106 GLU GLU B . n B 1 107 ASP 107 107 107 ASP ASP B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 SER 109 109 109 SER SER B . n B 1 110 GLN 110 110 110 GLN GLN B . n B 1 111 ASP 111 111 111 ASP ASP B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 ILE 113 113 113 ILE ILE B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 GLU 115 115 115 GLU GLU B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 ARG 117 117 117 ARG ARG B . n B 1 118 ASN 118 118 118 ASN ASN B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 ASN 121 121 121 ASN ASN B . n B 1 122 LYS 122 122 122 LYS LYS B . n B 1 123 LYS 123 123 123 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 1124 1124 GOL GOL A . D 3 CL 1 1125 1125 CL CL A . E 2 GOL 1 1123 1123 GOL GOL B . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 1 2001 2001 HOH HOH B . G 4 HOH 2 2002 2002 HOH HOH B . G 4 HOH 3 2003 2003 HOH HOH B . G 4 HOH 4 2004 2004 HOH HOH B . G 4 HOH 5 2005 2005 HOH HOH B . G 4 HOH 6 2006 2006 HOH HOH B . G 4 HOH 7 2007 2007 HOH HOH B . G 4 HOH 8 2008 2008 HOH HOH B . G 4 HOH 9 2009 2009 HOH HOH B . G 4 HOH 10 2010 2010 HOH HOH B . G 4 HOH 11 2011 2011 HOH HOH B . G 4 HOH 12 2012 2012 HOH HOH B . G 4 HOH 13 2013 2013 HOH HOH B . G 4 HOH 14 2014 2014 HOH HOH B . G 4 HOH 15 2015 2015 HOH HOH B . G 4 HOH 16 2016 2016 HOH HOH B . G 4 HOH 17 2017 2017 HOH HOH B . G 4 HOH 18 2018 2018 HOH HOH B . G 4 HOH 19 2019 2019 HOH HOH B . G 4 HOH 20 2020 2020 HOH HOH B . G 4 HOH 21 2021 2021 HOH HOH B . G 4 HOH 22 2022 2022 HOH HOH B . G 4 HOH 23 2023 2023 HOH HOH B . G 4 HOH 24 2024 2024 HOH HOH B . G 4 HOH 25 2025 2025 HOH HOH B . G 4 HOH 26 2026 2026 HOH HOH B . G 4 HOH 27 2027 2027 HOH HOH B . G 4 HOH 28 2028 2028 HOH HOH B . G 4 HOH 29 2029 2029 HOH HOH B . G 4 HOH 30 2030 2030 HOH HOH B . G 4 HOH 31 2031 2031 HOH HOH B . G 4 HOH 32 2032 2032 HOH HOH B . G 4 HOH 33 2033 2033 HOH HOH B . G 4 HOH 34 2034 2034 HOH HOH B . G 4 HOH 35 2035 2035 HOH HOH B . G 4 HOH 36 2036 2036 HOH HOH B . G 4 HOH 37 2037 2037 HOH HOH B . G 4 HOH 38 2038 2038 HOH HOH B . G 4 HOH 39 2039 2039 HOH HOH B . G 4 HOH 40 2040 2040 HOH HOH B . G 4 HOH 41 2041 2041 HOH HOH B . G 4 HOH 42 2042 2042 HOH HOH B . G 4 HOH 43 2043 2043 HOH HOH B . G 4 HOH 44 2044 2044 HOH HOH B . G 4 HOH 45 2045 2045 HOH HOH B . G 4 HOH 46 2046 2046 HOH HOH B . G 4 HOH 47 2047 2047 HOH HOH B . G 4 HOH 48 2048 2048 HOH HOH B . G 4 HOH 49 2049 2049 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-09 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-07-05 5 'Structure model' 1 4 2019-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_exptl_crystal_grow.temp' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.4248 35.1611 35.7520 0.2283 0.2718 0.2948 0.0398 -0.0352 0.0246 0.8845 1.4398 2.2944 0.0457 -0.7065 -0.2376 0.0858 0.0446 0.0395 0.0803 -0.0635 0.0754 -0.4695 -0.2594 -0.0222 'X-RAY DIFFRACTION' 2 ? refined 4.4004 43.5151 10.9188 0.3954 0.3654 0.1493 0.0934 -0.0385 0.1463 5.0089 12.1366 7.4213 9.1693 5.0683 4.0739 -0.3795 -0.5339 -0.1125 0.8107 0.1997 0.4910 -0.7228 0.2548 0.1797 'X-RAY DIFFRACTION' 3 ? refined 27.5011 32.7647 28.3474 0.2882 0.2585 0.2599 0.0002 0.0549 -0.0076 1.6930 1.3157 0.9079 -0.8983 0.0905 0.2017 0.0081 0.0796 0.0312 -0.1788 0.1439 -0.1079 -0.0927 0.1656 -0.1520 'X-RAY DIFFRACTION' 4 ? refined 14.3864 49.0605 10.9806 0.2484 0.3296 0.2838 -0.0016 0.0270 0.2802 11.9799 11.7276 35.2006 0.8873 -3.9269 -10.1368 0.1442 -0.1498 0.4468 0.3092 0.6950 -0.3942 -0.9931 1.3631 -0.8392 'X-RAY DIFFRACTION' 5 ? refined 14.1586 36.1059 26.7793 0.2977 0.2976 0.2942 -0.0019 0.0025 0.0010 -79.5496 -11.2005 -33.3035 32.7986 53.2868 -21.6223 -0.3027 0.5583 2.7754 0.7666 0.7791 -1.2063 -0.2133 0.0105 -0.4765 'X-RAY DIFFRACTION' 6 ? refined 16.9942 30.2639 29.2349 0.2588 0.3369 0.2941 0.0185 0.0191 0.0057 -0.4245 0.3115 0.2419 -0.1139 -0.0664 -0.2174 0.0679 -0.0544 0.0896 -0.1109 0.0422 -0.0253 0.0631 -0.0290 -0.1101 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 4 ? ? A 108 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 109 ? ? A 123 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 1 ? ? B 108 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 109 ? ? B 122 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 W 201 ? ? W 202 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 W 203 ? ? W 271 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 SnB phasing . ? 3 SOLVE phasing . ? 4 REFMAC refinement 5.1.24 ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 59 ? ? CG A ASP 59 ? ? OD2 A ASP 59 ? ? 124.43 118.30 6.13 0.90 N 2 1 CB A ASP 111 ? ? CG A ASP 111 ? ? OD2 A ASP 111 ? ? 124.60 118.30 6.30 0.90 N 3 1 CB B ASP 39 ? ? CG B ASP 39 ? ? OD2 B ASP 39 ? ? 123.94 118.30 5.64 0.90 N 4 1 NE B ARG 51 ? ? CZ B ARG 51 ? ? NH1 B ARG 51 ? ? 124.03 120.30 3.73 0.50 N 5 1 CB B ASP 107 ? ? CG B ASP 107 ? ? OD2 B ASP 107 ? ? 123.75 118.30 5.45 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 6 ? ? -57.20 -123.32 2 1 LYS A 23 ? ? 69.49 -56.06 3 1 LYS A 62 ? ? -109.87 79.36 4 1 ASN A 64 ? ? 79.15 -134.56 5 1 ASN A 121 ? ? -55.31 0.07 6 1 LYS A 122 ? ? -97.01 40.05 7 1 LYS B 23 ? ? 65.88 -60.20 8 1 ASN B 64 ? ? 58.28 -134.34 9 1 LEU B 108 ? ? -57.39 106.97 10 1 LYS B 122 ? ? -82.62 -159.05 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 5 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 TYR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 6 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -147.67 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2024 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.73 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 123 ? CA ? B LYS 123 CA 2 1 Y 1 B LYS 123 ? C ? B LYS 123 C 3 1 Y 1 B LYS 123 ? O ? B LYS 123 O 4 1 Y 1 B LYS 123 ? CB ? B LYS 123 CB 5 1 Y 1 B LYS 123 ? CG ? B LYS 123 CG 6 1 Y 1 B LYS 123 ? CD ? B LYS 123 CD 7 1 Y 1 B LYS 123 ? CE ? B LYS 123 CE 8 1 Y 1 B LYS 123 ? NZ ? B LYS 123 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A ASN 3 ? A ASN 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'CHLORIDE ION' CL 4 water HOH #