HEADER BACTERIAL ANTIBIOTIC RESISTANCE 28-JUL-03 1OKR TITLE THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE TITLE 2 REGULATING TRANSCRIPTIONAL REPRESSOR MECI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHICILLIN RESISTANCE REGULATORY PROTEIN MECI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MECI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: N315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL ANTIBIOTIC RESISTANCE, MECI PROTEIN, TRANSCRIPTIONAL KEYWDS 2 REGULATORY ELEMENT, DNA-BINDING PROTEIN, WINGED HELIX PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GARCIA-CASTELLANOS,A.MARRERO,G.MALLORQUI-FERNANDEZ,J.POTEMPA, AUTHOR 2 M.COLL,F.X.GOMIS-RUTH REVDAT 5 03-APR-19 1OKR 1 REMARK REVDAT 4 05-JUL-17 1OKR 1 REMARK REVDAT 3 24-FEB-09 1OKR 1 VERSN REVDAT 2 16-OCT-03 1OKR 1 SOURCE REVDAT 1 09-OCT-03 1OKR 0 JRNL AUTH R.GARCIA-CASTELLANOS,A.MARRERO,G.MALLORQUI-FERNANDEZ, JRNL AUTH 2 J.POTEMPA,M.COLL,F.X.GOMIS-RUTH JRNL TITL THREE-DIMENSIONAL STRUCTURE OF MECI: MOLECULAR BASIS FOR JRNL TITL 2 TRANSCRIPTIONAL REGULATION OF STAPHYLOCOCCAL METHICILLIN JRNL TITL 3 RESISTANCE JRNL REF J.BIOL.CHEM. V. 278 39897 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12881514 JRNL DOI 10.1074/JBC.M307199200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 13363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 747 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2051 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.79000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : -3.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2097 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1883 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2805 ; 1.561 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4436 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 7.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2236 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 444 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2054 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1314 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.097 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.334 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1206 ; 2.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1962 ; 4.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 891 ; 6.017 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 8.527 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4248 35.1611 35.7520 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.2718 REMARK 3 T33: 0.2948 T12: 0.0398 REMARK 3 T13: -0.0352 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.8845 L22: 1.4398 REMARK 3 L33: 2.2944 L12: 0.0457 REMARK 3 L13: -0.7065 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: 0.0446 S13: 0.0395 REMARK 3 S21: 0.0803 S22: -0.0635 S23: 0.0754 REMARK 3 S31: -0.4695 S32: -0.2594 S33: -0.0222 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4004 43.5151 10.9188 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 0.3654 REMARK 3 T33: 0.1493 T12: 0.0934 REMARK 3 T13: -0.0385 T23: 0.1463 REMARK 3 L TENSOR REMARK 3 L11: 5.0089 L22: 12.1366 REMARK 3 L33: 7.4213 L12: 9.1693 REMARK 3 L13: 5.0683 L23: 4.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.3795 S12: -0.5339 S13: -0.1125 REMARK 3 S21: 0.8107 S22: 0.1997 S23: 0.4910 REMARK 3 S31: -0.7228 S32: 0.2548 S33: 0.1797 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5011 32.7647 28.3474 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.2585 REMARK 3 T33: 0.2599 T12: 0.0002 REMARK 3 T13: 0.0549 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.6930 L22: 1.3157 REMARK 3 L33: 0.9079 L12: -0.8983 REMARK 3 L13: 0.0905 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0796 S13: 0.0312 REMARK 3 S21: -0.1788 S22: 0.1439 S23: -0.1079 REMARK 3 S31: -0.0927 S32: 0.1656 S33: -0.1520 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3864 49.0605 10.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.3296 REMARK 3 T33: 0.2838 T12: -0.0016 REMARK 3 T13: 0.0270 T23: 0.2802 REMARK 3 L TENSOR REMARK 3 L11: 11.9799 L22: 11.7276 REMARK 3 L33: 35.2006 L12: 0.8873 REMARK 3 L13: -3.9269 L23: -10.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.1442 S12: -0.1498 S13: 0.4468 REMARK 3 S21: 0.3092 S22: 0.6950 S23: -0.3942 REMARK 3 S31: -0.9931 S32: 1.3631 S33: -0.8392 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 201 W 202 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1586 36.1059 26.7793 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.2976 REMARK 3 T33: 0.2942 T12: -0.0019 REMARK 3 T13: 0.0025 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: -79.5496 L22: -11.2005 REMARK 3 L33: -33.3035 L12: 32.7986 REMARK 3 L13: 53.2868 L23: -21.6223 REMARK 3 S TENSOR REMARK 3 S11: -0.3027 S12: 0.5583 S13: 2.7754 REMARK 3 S21: 0.7666 S22: 0.7791 S23: -1.2063 REMARK 3 S31: -0.2133 S32: 0.0105 S33: -0.4765 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 203 W 271 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9942 30.2639 29.2349 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.3369 REMARK 3 T33: 0.2941 T12: 0.0185 REMARK 3 T13: 0.0191 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: -0.4245 L22: 0.3115 REMARK 3 L33: 0.2419 L12: -0.1139 REMARK 3 L13: -0.0664 L23: -0.2174 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.0544 S13: 0.0896 REMARK 3 S21: -0.1109 S22: 0.0422 S23: -0.0253 REMARK 3 S31: 0.0631 S32: -0.0290 S33: -0.1101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ADDITIONAL REFINEMENT WAS PERFORMED USING CNS 1.1. REMARK 4 REMARK 4 1OKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1290013184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625,0.97915,0.97926, 0.96111 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61498 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 66.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE DATASETS ARE PART OF A 3-THREE WAVELENGTH MAD REMARK 200 EXPERIMENT. THE WAVELENGTH OF THE NATIVE DATASET IS 0.97625 ANG. REMARK 200 THE DATASET CONTAINS 14159 UNIQUE REFLECTIONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS-HCL PH 7.4, 0.2 M NACL AT 4 REMARK 280 DEGREES., PH 7.40, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 123 CA C O CB CG CD CE REMARK 470 LYS B 123 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 39 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 107 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 6 -123.32 -57.20 REMARK 500 LYS A 23 -56.06 69.49 REMARK 500 LYS A 62 79.36 -109.87 REMARK 500 ASN A 64 -134.56 79.15 REMARK 500 ASN A 121 0.07 -55.31 REMARK 500 LYS A 122 40.05 -97.01 REMARK 500 LYS B 23 -60.20 65.88 REMARK 500 ASN B 64 -134.34 58.28 REMARK 500 LEU B 108 106.97 -57.39 REMARK 500 LYS B 122 -159.05 -82.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 5 TYR A 6 -147.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2024 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1123 DBREF 1OKR A 1 123 UNP P26598 MECI_STAN 1 123 DBREF 1OKR B 1 123 UNP P26598 MECI_STAN 1 123 SEQRES 1 A 123 MET ASP ASN LYS THR TYR GLU ILE SER SER ALA GLU TRP SEQRES 2 A 123 GLU VAL MET ASN ILE ILE TRP MET LYS LYS TYR ALA SER SEQRES 3 A 123 ALA ASN ASN ILE ILE GLU GLU ILE GLN MET GLN LYS ASP SEQRES 4 A 123 TRP SER PRO LYS THR ILE ARG THR LEU ILE THR ARG LEU SEQRES 5 A 123 TYR LYS LYS GLY PHE ILE ASP ARG LYS LYS ASP ASN LYS SEQRES 6 A 123 ILE PHE GLN TYR TYR SER LEU VAL GLU GLU SER ASP ILE SEQRES 7 A 123 LYS TYR LYS THR SER LYS ASN PHE ILE ASN LYS VAL TYR SEQRES 8 A 123 LYS GLY GLY PHE ASN SER LEU VAL LEU ASN PHE VAL GLU SEQRES 9 A 123 LYS GLU ASP LEU SER GLN ASP GLU ILE GLU GLU LEU ARG SEQRES 10 A 123 ASN ILE LEU ASN LYS LYS SEQRES 1 B 123 MET ASP ASN LYS THR TYR GLU ILE SER SER ALA GLU TRP SEQRES 2 B 123 GLU VAL MET ASN ILE ILE TRP MET LYS LYS TYR ALA SER SEQRES 3 B 123 ALA ASN ASN ILE ILE GLU GLU ILE GLN MET GLN LYS ASP SEQRES 4 B 123 TRP SER PRO LYS THR ILE ARG THR LEU ILE THR ARG LEU SEQRES 5 B 123 TYR LYS LYS GLY PHE ILE ASP ARG LYS LYS ASP ASN LYS SEQRES 6 B 123 ILE PHE GLN TYR TYR SER LEU VAL GLU GLU SER ASP ILE SEQRES 7 B 123 LYS TYR LYS THR SER LYS ASN PHE ILE ASN LYS VAL TYR SEQRES 8 B 123 LYS GLY GLY PHE ASN SER LEU VAL LEU ASN PHE VAL GLU SEQRES 9 B 123 LYS GLU ASP LEU SER GLN ASP GLU ILE GLU GLU LEU ARG SEQRES 10 B 123 ASN ILE LEU ASN LYS LYS HET GOL A1124 6 HET CL A1125 1 HET GOL B1123 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CL CL 1- FORMUL 6 HOH *69(H2 O) HELIX 1 1 SER A 9 LYS A 23 1 15 HELIX 2 2 ALA A 27 LYS A 38 1 12 HELIX 3 3 SER A 41 LYS A 55 1 15 HELIX 4 4 GLU A 74 TYR A 91 1 18 HELIX 5 5 GLY A 94 GLU A 106 1 13 HELIX 6 6 SER A 109 ASN A 121 1 13 HELIX 7 7 SER B 9 LYS B 23 1 15 HELIX 8 8 SER B 26 LYS B 38 1 13 HELIX 9 9 SER B 41 LYS B 55 1 15 HELIX 10 10 GLU B 74 TYR B 91 1 18 HELIX 11 11 GLY B 94 GLU B 106 1 13 HELIX 12 12 SER B 109 LYS B 122 1 14 SHEET 1 AA 3 ALA A 25 SER A 26 0 SHEET 2 AA 3 ILE A 66 SER A 71 -1 O TYR A 69 N ALA A 25 SHEET 3 AA 3 ILE A 58 ASP A 63 -1 O ASP A 59 N TYR A 70 SHEET 1 BA 2 ILE B 58 ASP B 63 0 SHEET 2 BA 2 ILE B 66 SER B 71 -1 O ILE B 66 N ASP B 63 SITE 1 AC1 3 TRP A 20 SER A 71 VAL A 73 SITE 1 AC2 1 GLU B 74 CRYST1 66.050 73.360 74.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013390 0.00000 MTRIX1 1 -0.882000 -0.283000 0.376000 27.06010 1 MTRIX2 1 -0.136000 -0.612000 -0.779000 83.20142 1 MTRIX3 1 0.450000 -0.739000 0.501000 34.85890 1