HEADER ANTI-ONCOGENE PROTEIN 13-JUN-94 1OLH TITLE HIGH-RESOLUTION SOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF TITLE 2 P53 BY MULTI-DIMENSIONAL NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUPPRESSOR P53 (OLIGOMERIZATION DOMAIN); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ANTI-ONCOGENE PROTEIN EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR G.M.CLORE,J.G.OMICHINSKI,A.M.GRONENBORN REVDAT 4 23-FEB-22 1OLH 1 REMARK REVDAT 3 24-FEB-09 1OLH 1 VERSN REVDAT 2 01-APR-03 1OLH 1 JRNL REVDAT 1 31-MAR-95 1OLH 0 JRNL AUTH G.M.CLORE,J.G.OMICHINSKI,K.SAKAGUCHI,N.ZAMBRANO,H.SAKAMOTO, JRNL AUTH 2 E.APPELLA,A.M.GRONENBORN JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF JRNL TITL 2 P53 BY MULTIDIMENSIONAL NMR. JRNL REF SCIENCE V. 265 386 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8023159 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D STRUCTURE OF THE OLIGOMERIZATION DOMAIN (RESIDUES REMARK 3 319 - 360) OF P53 BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED REMARK 3 AND -FILTERED NMR IS BASED ON 3824 EXPERIMENTAL RESTRAINTS REMARK 3 COMPRISING THE FOLLOWING INTRA- AND INTER-SUBUNIT REMARK 3 RESTRAINTS: (A) INTRASUBUNIT: 840 SEQUENTIAL (|I-J|=1), REMARK 3 744 SHORT RANGE (1 < |I-J| >=5) AND 72 LONG RANGE REMARK 3 (|I-J| >5) INTERRESIDUES AND INTRARESIDUE APPROXIMATE REMARK 3 INTERPROTON DISTANCE RESTRAINTS, 136 DISTANCE RESTRAINTS REMARK 3 FOR 68 HYDROGEN BONDS, 268 TORSION ANGLE (144 PHI, 104 CHI1 REMARK 3 AND 20 CHI2) RESTRAINTS, AND 144 THREE-BOND HN-HA COUPLING REMARK 3 CONSTANT RESTRAINTS. (B) INTERSUBUNIT: 96 A-B/C-D, REMARK 3 758 A-C/B-D, 10 A-D/B-C APPROXIMATE INTERPROTON DISTANCE REMARK 3 RESTRAINTS, AND 24 DISTANCE RESTRAINTS FOR 12 HYDROGEN REMARK 3 BONDS INVOLVING THE A-C/B-D SUBUNITS. IN ADDITION, THERE REMARK 3 ARE A TOTAL OF 38 CALPHA AND 38 CB CHEMICAL SHIFT REMARK 3 RESTRAINTS PER SUBUNIT THAT HAVE BEEN INCORPORATED REMARK 3 INTO THE REFINEMENT [J. KUSZWESKI, J. QIN, A.M. GRONENBORN REMARK 3 AND G.M. CLORE, J. MAGN RESON. SER IN PRESS (1994)] REMARK 3 REMARK 3 THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC REMARK 3 MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING REMARK 3 METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. AND REMARK 3 GRONENBORN, A.M. (1988) FEBS LETT. 29, 317-324. ALL REMARK 3 STRUCTURAL STATISTICS ARE GIVEN IN THE JRNL REFERENCE. REMARK 3 REMARK 3 THE RESTRAINED MINIMIZED AVERAGE STRUCTURE (SA)R IS REMARK 3 PRESENTED IN PROTEIN DATA BANK ENTRY 1OLG. THIS IS REMARK 3 OBTAINED BY FIRST AVERAGING THE COORDINATES OF THE REMARK 3 INDIVIDUAL 35 DYNAMICAL SIMULATED ANNEALING SA STRUCTURES REMARK 3 BEST FITTED TO RESIDUES 324 - 356 OF ALL FOUR SUBUNITS, REMARK 3 AND SUBJECTING THE RESULTING COORDINATES TO RESTRAINED REMARK 3 MINIMIZATION. THE QUANTITY PRESENTED IN COLUMNS 61 - 66 REMARK 3 IN THIS SET OF COORDINATES (THE B-FACTOR FIELD IN X-RAY REMARK 3 STRUCTURES) GIVES THE AVERAGE RMS DIFFERENCE BETWEEN REMARK 3 THE INDIVIDUAL SA STRUCTURES AND THE MEAN STRUCTURE. THE REMARK 3 NUMBERS IN COLUMNS 61 - 66 OF THE INDIVIDUAL STRUCTURES REMARK 3 HAVE NO MEANING. NOTE THAT RESIDUES 319 - 323 AT THE REMARK 3 N-TERMINUS AND RESIDUES 357 - 360 AT THE C-TERMINUS ARE REMARK 3 DISORDERED. REMARK 4 REMARK 4 1OLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175467. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 320 -94.51 54.96 REMARK 500 1 PRO A 322 -81.78 -64.13 REMARK 500 1 GLU A 326 -179.75 -56.89 REMARK 500 1 PHE A 328 -160.34 -103.46 REMARK 500 1 LYS B 320 -94.45 55.04 REMARK 500 1 PRO B 322 -81.83 -64.19 REMARK 500 1 GLU B 326 -179.34 -57.27 REMARK 500 1 PHE B 328 -160.20 -103.27 REMARK 500 1 LYS C 320 100.65 61.08 REMARK 500 1 ASP C 324 -151.97 -80.78 REMARK 500 1 GLU C 326 -171.81 -57.48 REMARK 500 1 PHE C 328 -165.85 -103.15 REMARK 500 1 GLU C 358 160.19 -49.49 REMARK 500 1 LYS D 320 -94.46 55.07 REMARK 500 1 PRO D 322 -81.72 -64.15 REMARK 500 1 GLU D 326 -179.60 -56.98 REMARK 500 1 PHE D 328 -160.35 -103.27 REMARK 500 2 LYS A 320 84.88 61.54 REMARK 500 2 PRO A 322 -81.99 -61.22 REMARK 500 2 ASP A 324 -126.15 -80.03 REMARK 500 2 GLU A 326 -179.61 -59.14 REMARK 500 2 PHE A 328 -167.99 -112.22 REMARK 500 2 LYS B 320 85.18 61.95 REMARK 500 2 PRO B 322 -81.10 -61.69 REMARK 500 2 ASP B 324 -126.03 -80.20 REMARK 500 2 GLU B 326 -179.39 -59.19 REMARK 500 2 PHE B 328 -167.44 -111.84 REMARK 500 2 LYS C 320 94.62 67.72 REMARK 500 2 LYS C 321 93.03 -161.98 REMARK 500 2 ASP C 324 31.26 -83.94 REMARK 500 2 PHE C 328 -166.41 -103.20 REMARK 500 2 LYS D 320 85.44 60.43 REMARK 500 2 PRO D 322 -81.59 -61.35 REMARK 500 2 ASP D 324 -126.89 -79.54 REMARK 500 2 GLU D 326 -179.45 -58.95 REMARK 500 2 PHE D 328 -166.71 -111.35 REMARK 500 3 LYS A 320 -88.72 60.47 REMARK 500 3 LYS A 321 76.58 -156.83 REMARK 500 3 PHE A 328 -166.19 -111.46 REMARK 500 3 LYS B 320 -89.14 60.33 REMARK 500 3 LYS B 321 76.97 -156.83 REMARK 500 3 PHE B 328 -167.07 -113.57 REMARK 500 3 LYS C 320 130.40 61.00 REMARK 500 3 LYS C 321 79.54 -157.58 REMARK 500 3 PRO C 322 174.75 -58.32 REMARK 500 3 GLU C 326 -179.56 -58.10 REMARK 500 3 LYS D 320 -89.17 59.87 REMARK 500 3 LYS D 321 76.94 -156.51 REMARK 500 3 PHE D 328 -166.39 -113.09 REMARK 500 4 LYS A 320 -142.44 63.62 REMARK 500 REMARK 500 THIS ENTRY HAS 706 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OLG RELATED DB: PDB DBREF 1OLH A 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1OLH B 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1OLH C 319 360 UNP P04637 P53_HUMAN 319 360 DBREF 1OLH D 319 360 UNP P04637 P53_HUMAN 319 360 SEQRES 1 A 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 A 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 A 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 A 42 GLU PRO GLY SEQRES 1 B 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 B 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 B 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 B 42 GLU PRO GLY SEQRES 1 C 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 C 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 C 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 C 42 GLU PRO GLY SEQRES 1 D 42 LYS LYS LYS PRO LEU ASP GLY GLU TYR PHE THR LEU GLN SEQRES 2 D 42 ILE ARG GLY ARG GLU ARG PHE GLU MET PHE ARG GLU LEU SEQRES 3 D 42 ASN GLU ALA LEU GLU LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 4 D 42 GLU PRO GLY HELIX 1 1 GLY A 334 ALA A 355 1 22 HELIX 2 2 GLY B 334 ALA B 355 1 22 HELIX 3 3 GLY C 334 GLY C 356 1 23 HELIX 4 4 GLY D 334 ALA D 355 1 22 SHEET 1 A 2 LEU A 330 ARG A 333 0 SHEET 2 A 2 TYR C 327 LEU C 330 -1 N PHE C 328 O ILE A 332 SHEET 1 B 2 TYR B 327 ARG B 333 0 SHEET 2 B 2 TYR D 327 ARG D 333 -1 N PHE D 328 O ILE B 332 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1