HEADER ISOMERASE 26-FEB-03 1OMS TITLE STRUCTURE DETERMINATION BY MAD: E.COLI TRIGGER FACTOR BINDING AT THE TITLE 2 RIBOSOMAL EXIT TUNNEL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGER FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RIBOSOME BINDING DOMAIN; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TIG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA-BETA STRUCTURE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KRISTENSEN,M.GAJHEDE REVDAT 3 13-JUL-11 1OMS 1 VERSN REVDAT 2 24-FEB-09 1OMS 1 VERSN REVDAT 1 16-DEC-03 1OMS 0 JRNL AUTH O.KRISTENSEN,M.GAJHEDE JRNL TITL CHAPERONE BINDING AT THE RIBOSOMAL EXIT TUNNEL. JRNL REF STRUCTURE V. 11 1547 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 14656439 JRNL DOI 10.1016/J.STR.2003.11.003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.KRAMER,T.RAUCH,W.RIST,S.VORDERWULBECKE,H.PATZELT, REMARK 1 AUTH 2 A.SCHULZE-SPECKING,N.BAN,E.DEUERLING,B.BUKAU REMARK 1 TITL L23 PROTEIN FUNCTIONS AS A CHAPERONE DOCKING SITE ON THE REMARK 1 TITL 2 RIBOSOME. REMARK 1 REF NATURE V. 419 171 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/NATURE01047 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.BLAHA,D.N.WILSON,G.STOLLER,G.FISCHER,R.WILLUMEIT, REMARK 1 AUTH 2 K.H.NIERHAUS REMARK 1 TITL LOCALIZATION OF THE TRIGGER FACTOR BINDING SITE ON THE REMARK 1 TITL 2 RIBOSOMAL 50S SUBUNIT. REMARK 1 REF J.MOL.BIOL. V. 326 887 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)01436-5 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.MAIER,B.ECKERT,C.SCHOLZ,H.LILIE,F.X.SCHMID REMARK 1 TITL INTERACTION OF TRIGGER FACTOR WITH THE RIBOSOME. REMARK 1 REF J.MOL.BIOL. V. 326 585 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)01427-4 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5499572.780 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2044 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5011 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 305 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.07000 REMARK 3 B22 (A**2) : 4.66000 REMARK 3 B33 (A**2) : -9.73000 REMARK 3 B12 (A**2) : 3.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.83 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.360 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 39.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SO2.PARAM REMARK 3 PARAMETER FILE 5 : PG4.PARAM REMARK 3 PARAMETER FILE 6 : GOL.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SO2.TOP REMARK 3 TOPOLOGY FILE 5 : PG4.TOP REMARK 3 TOPOLOGY FILE 6 : GOL.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINEMENT WAS BASED ON THE "MLHL" TARGET FUNCTION. REMARK 3 EXPERIMENTAL PHASES AND STRONG NCS RESTRAINTS REMARK 3 WERE USED THROUGHOUT. USED ALL DATA IN THE REMARK 3 ULTIMATE BRIEF REFINEMENT CYCLE AGAINST A REMARK 3 STANDARD CRYSTALLOGRAPHIC TARGET: R-FACTOR(ALL). REMARK 4 REMARK 4 1OMS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB018451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 0.9404 REMARK 200 MONOCHROMATOR : SAGITTAL-FOCUSING DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR IN COMBINATION WITH REMARK 200 A VERTICAL FOCUSING MIRROR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 33.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MME, PEG 400, AMMONIUM REMARK 280 SULFATE, SODIUM ACETATE, TRIS, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.82200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.68184 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 125.13633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.82200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.68184 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 125.13633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.82200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.68184 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 125.13633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.82200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.68184 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 125.13633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.82200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.68184 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 125.13633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.82200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.68184 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 125.13633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.36368 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 250.27267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 41.36368 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 250.27267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 41.36368 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 250.27267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 41.36368 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 250.27267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 41.36368 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 250.27267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 41.36368 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 250.27267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO2 B 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 594 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 543 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 622 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO2 B 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 639 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 116 REMARK 465 LEU A 117 REMARK 465 GLN A 118 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 117 REMARK 465 GLN B 118 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLN C 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO2 B 601 O2 SO2 B 601 3655 1.44 REMARK 500 S SO2 B 601 O1 SO2 B 601 3655 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 144.83 89.26 REMARK 500 GLN A 9 61.19 152.93 REMARK 500 LEU A 11 -21.45 80.96 REMARK 500 LYS A 83 45.93 38.31 REMARK 500 THR B 8 -75.69 -97.81 REMARK 500 MSE C 1 -36.97 -152.72 REMARK 500 GLN C 2 76.12 81.02 REMARK 500 THR C 8 -74.75 -91.15 REMARK 500 ASP C 42 -56.77 -12.20 REMARK 500 LYS C 46 131.57 -37.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO2 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 301 DBREF 1OMS A 1 118 UNP P0A850 TIG_ECOLI 1 118 DBREF 1OMS B 1 118 UNP P0A850 TIG_ECOLI 1 118 DBREF 1OMS C 1 118 UNP P0A850 TIG_ECOLI 1 118 SEQADV 1OMS GLY A -2 UNP P0A850 EXPRESSION TAG SEQADV 1OMS SER A -1 UNP P0A850 EXPRESSION TAG SEQADV 1OMS HIS A 0 UNP P0A850 EXPRESSION TAG SEQADV 1OMS GLY B -2 UNP P0A850 EXPRESSION TAG SEQADV 1OMS SER B -1 UNP P0A850 EXPRESSION TAG SEQADV 1OMS HIS B 0 UNP P0A850 EXPRESSION TAG SEQADV 1OMS GLY C -2 UNP P0A850 EXPRESSION TAG SEQADV 1OMS SER C -1 UNP P0A850 EXPRESSION TAG SEQADV 1OMS HIS C 0 UNP P0A850 EXPRESSION TAG SEQRES 1 A 121 GLY SER HIS MSE GLN VAL SER VAL GLU THR THR GLN GLY SEQRES 2 A 121 LEU GLY ARG ARG VAL THR ILE THR ILE ALA ALA ASP SER SEQRES 3 A 121 ILE GLU THR ALA VAL LYS SER GLU LEU VAL ASN VAL ALA SEQRES 4 A 121 LYS LYS VAL ARG ILE ASP GLY PHE ARG LYS GLY LYS VAL SEQRES 5 A 121 PRO MSE ASN ILE VAL ALA GLN ARG TYR GLY ALA SER VAL SEQRES 6 A 121 ARG GLN ASP VAL LEU GLY ASP LEU MSE SER ARG ASN PHE SEQRES 7 A 121 ILE ASP ALA ILE ILE LYS GLU LYS ILE ASN PRO ALA GLY SEQRES 8 A 121 ALA PRO THR TYR VAL PRO GLY GLU TYR LYS LEU GLY GLU SEQRES 9 A 121 ASP PHE THR TYR SER VAL GLU PHE GLU VAL TYR PRO GLU SEQRES 10 A 121 VAL GLU LEU GLN SEQRES 1 B 121 GLY SER HIS MSE GLN VAL SER VAL GLU THR THR GLN GLY SEQRES 2 B 121 LEU GLY ARG ARG VAL THR ILE THR ILE ALA ALA ASP SER SEQRES 3 B 121 ILE GLU THR ALA VAL LYS SER GLU LEU VAL ASN VAL ALA SEQRES 4 B 121 LYS LYS VAL ARG ILE ASP GLY PHE ARG LYS GLY LYS VAL SEQRES 5 B 121 PRO MSE ASN ILE VAL ALA GLN ARG TYR GLY ALA SER VAL SEQRES 6 B 121 ARG GLN ASP VAL LEU GLY ASP LEU MSE SER ARG ASN PHE SEQRES 7 B 121 ILE ASP ALA ILE ILE LYS GLU LYS ILE ASN PRO ALA GLY SEQRES 8 B 121 ALA PRO THR TYR VAL PRO GLY GLU TYR LYS LEU GLY GLU SEQRES 9 B 121 ASP PHE THR TYR SER VAL GLU PHE GLU VAL TYR PRO GLU SEQRES 10 B 121 VAL GLU LEU GLN SEQRES 1 C 121 GLY SER HIS MSE GLN VAL SER VAL GLU THR THR GLN GLY SEQRES 2 C 121 LEU GLY ARG ARG VAL THR ILE THR ILE ALA ALA ASP SER SEQRES 3 C 121 ILE GLU THR ALA VAL LYS SER GLU LEU VAL ASN VAL ALA SEQRES 4 C 121 LYS LYS VAL ARG ILE ASP GLY PHE ARG LYS GLY LYS VAL SEQRES 5 C 121 PRO MSE ASN ILE VAL ALA GLN ARG TYR GLY ALA SER VAL SEQRES 6 C 121 ARG GLN ASP VAL LEU GLY ASP LEU MSE SER ARG ASN PHE SEQRES 7 C 121 ILE ASP ALA ILE ILE LYS GLU LYS ILE ASN PRO ALA GLY SEQRES 8 C 121 ALA PRO THR TYR VAL PRO GLY GLU TYR LYS LEU GLY GLU SEQRES 9 C 121 ASP PHE THR TYR SER VAL GLU PHE GLU VAL TYR PRO GLU SEQRES 10 C 121 VAL GLU LEU GLN MODRES 1OMS MSE A 1 MET SELENOMETHIONINE MODRES 1OMS MSE A 51 MET SELENOMETHIONINE MODRES 1OMS MSE A 71 MET SELENOMETHIONINE MODRES 1OMS MSE B 1 MET SELENOMETHIONINE MODRES 1OMS MSE B 51 MET SELENOMETHIONINE MODRES 1OMS MSE B 71 MET SELENOMETHIONINE MODRES 1OMS MSE C 1 MET SELENOMETHIONINE MODRES 1OMS MSE C 51 MET SELENOMETHIONINE MODRES 1OMS MSE C 71 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 51 8 HET MSE A 71 8 HET MSE B 1 8 HET MSE B 51 8 HET MSE B 71 8 HET MSE C 1 8 HET MSE C 51 8 HET MSE C 71 8 HET SO4 B 501 5 HET SO4 A 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 C 505 5 HET SO4 C 506 5 HET SO4 C 507 5 HET SO4 C 508 5 HET SO4 B 509 5 HET SO4 A 510 5 HET SO4 B 511 5 HET SO4 A 512 5 HET SO4 A 514 5 HET PG4 B 401 13 HET PG4 C 402 13 HET PG4 C 403 13 HET PG4 B 404 13 HET PG4 C 405 13 HET SO2 B 601 3 HET GOL C 301 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO2 SULFUR DIOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 SO4 13(O4 S 2-) FORMUL 17 PG4 5(C8 H18 O5) FORMUL 22 SO2 O2 S FORMUL 23 GOL C3 H8 O3 FORMUL 24 HOH *214(H2 O) HELIX 1 1 ALA A 20 VAL A 39 1 20 HELIX 2 2 PRO A 50 GLU A 82 1 33 HELIX 3 3 ALA B 20 VAL B 39 1 20 HELIX 4 4 PRO B 50 GLU B 82 1 33 HELIX 5 5 ALA C 20 VAL C 39 1 20 HELIX 6 6 PRO C 50 GLU C 82 1 33 SHEET 1 A 4 GLN A 2 THR A 7 0 SHEET 2 A 4 GLY A 12 ILE A 19 -1 O THR A 16 N SER A 4 SHEET 3 A 4 PHE A 103 GLU A 110 -1 O PHE A 103 N ILE A 19 SHEET 4 A 4 THR A 91 PRO A 94 -1 N THR A 91 O GLU A 108 SHEET 1 B 4 GLN B 2 THR B 7 0 SHEET 2 B 4 GLY B 12 ILE B 19 -1 O THR B 16 N SER B 4 SHEET 3 B 4 PHE B 103 GLU B 110 -1 O PHE B 103 N ILE B 19 SHEET 4 B 4 THR B 91 PRO B 94 -1 N THR B 91 O GLU B 108 SHEET 1 C 4 VAL C 3 THR C 7 0 SHEET 2 C 4 GLY C 12 ILE C 19 -1 O THR C 16 N SER C 4 SHEET 3 C 4 PHE C 103 VAL C 111 -1 O PHE C 103 N ILE C 19 SHEET 4 C 4 PRO C 86 PRO C 94 -1 N VAL C 93 O SER C 106 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C PRO A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N ASN A 52 1555 1555 1.33 LINK C LEU A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N SER A 72 1555 1555 1.33 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C PRO B 50 N MSE B 51 1555 1555 1.32 LINK C MSE B 51 N ASN B 52 1555 1555 1.33 LINK C LEU B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N SER B 72 1555 1555 1.33 LINK C HIS C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N GLN C 2 1555 1555 1.33 LINK C PRO C 50 N MSE C 51 1555 1555 1.33 LINK C MSE C 51 N ASN C 52 1555 1555 1.33 LINK C LEU C 70 N MSE C 71 1555 1555 1.33 LINK C MSE C 71 N SER C 72 1555 1555 1.33 SITE 1 AC1 5 ASP A 42 GLY A 43 ARG A 45 GLU B 114 SITE 2 AC1 5 HOH B 627 SITE 1 AC2 5 ARG A 57 LYS C 98 LEU C 99 SO4 C 508 SITE 2 AC2 5 HOH C 533 SITE 1 AC3 4 ARG B 40 LYS B 46 HOH B 639 HOH B 644 SITE 1 AC4 8 ARG B 40 ILE B 41 ASP B 42 GLY B 43 SITE 2 AC4 8 ARG B 45 LYS B 48 HOH B 628 HOH B 659 SITE 1 AC5 6 PRO A 50 MSE A 51 HOH A 535 LYS C 29 SITE 2 AC5 6 ARG C 40 ARG C 45 SITE 1 AC6 3 LYS A 37 THR B 8 ARG B 14 SITE 1 AC7 5 GLN C 9 GLY C 10 ARG C 13 HOH C 521 SITE 2 AC7 5 HOH C 585 SITE 1 AC8 7 ARG A 45 ARG A 57 SO4 A 502 SO4 A 514 SITE 2 AC8 7 ASN B 85 TYR B 112 HOH B 614 SITE 1 AC9 4 PHE B 44 ARG B 45 HOH B 637 HOH B 656 SITE 1 BC1 6 LYS A 98 LEU A 99 HOH A 548 HOH A 560 SITE 2 BC1 6 ARG C 57 ASN C 85 SITE 1 BC2 3 LYS B 29 PRO B 50 MSE B 51 SITE 1 BC3 5 GLY A 47 LYS A 48 GLN B 9 GLY B 10 SITE 2 BC3 5 ASP C 42 SITE 1 BC4 6 GLN A 56 ARG A 57 TYR B 112 HOH B 615 SITE 2 BC4 6 PG4 C 402 SO4 C 508 SITE 1 BC5 4 GLY A 68 GLN B 64 GLY B 95 PG4 B 404 SITE 1 BC6 8 SO4 A 514 TYR B 112 PRO B 113 ALA C 60 SITE 2 BC6 8 ALA C 89 HOH C 515 HOH C 518 HOH C 553 SITE 1 BC7 6 GLN C 64 MSE C 71 SER C 72 TYR C 92 SITE 2 BC7 6 HOH C 543 HOH C 578 SITE 1 BC8 7 GLN A 64 ASP A 65 MSE B 71 SER B 72 SITE 2 BC8 7 TYR B 92 PG4 B 401 HOH B 610 SITE 1 BC9 4 VAL C 93 PRO C 94 GLY C 95 SER C 106 SITE 1 CC1 3 ARG B 40 ARG B 45 LYS B 46 SITE 1 CC2 5 LYS A 29 MSE C 51 ASN C 52 HOH C 544 SITE 2 CC2 5 HOH C 558 CRYST1 71.644 71.644 375.409 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013958 0.008059 0.000000 0.00000 SCALE2 0.000000 0.016117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002664 0.00000 HETATM 1 N MSE A 1 40.060 -11.025 106.208 1.00 73.32 N HETATM 2 CA MSE A 1 39.611 -9.601 106.201 1.00 73.04 C HETATM 3 C MSE A 1 40.830 -8.696 106.366 1.00 71.49 C HETATM 4 O MSE A 1 41.666 -8.922 107.240 1.00 72.95 O HETATM 5 CB MSE A 1 38.598 -9.368 107.337 1.00 74.78 C HETATM 6 CG MSE A 1 38.275 -7.899 107.640 1.00 76.56 C HETATM 7 SE MSE A 1 36.780 -7.607 108.880 1.00 77.70 SE HETATM 8 CE MSE A 1 35.680 -6.538 107.702 1.00 76.99 C