HEADER SERINE PROTEINASE INHIBITOR 11-OCT-95 1OMT TITLE SOLUTION STRUCTURE OF OVOMUCOID (THIRD DOMAIN) FROM DOMESTIC TURKEY TITLE 2 (298K, PH 4.1) (NMR, 50 STRUCTURES) (STANDARD NOESY ANALYSIS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OVOMUCOID (THIRD DOMAIN); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OMTKY3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 3 ORGANISM_COMMON: TURKEY; SOURCE 4 ORGANISM_TAXID: 9103; SOURCE 5 CELLULAR_LOCATION: EGG WHITE KEYWDS SPIN DIFFUSION, NETWORK EDITING, BD-NOESY, CBD-NOESY, SERINE KEYWDS 2 PROTEINASE INHIBITOR EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR C.G.HOOGSTRATEN,S.CHOE,W.M.WESTLER,J.L.MARKLEY REVDAT 4 16-OCT-24 1OMT 1 REMARK REVDAT 3 23-FEB-22 1OMT 1 REMARK REVDAT 2 24-FEB-09 1OMT 1 VERSN REVDAT 1 08-MAR-96 1OMT 0 JRNL AUTH C.G.HOOGSTRATEN,S.CHOE,W.M.WESTLER,J.L.MARKLEY JRNL TITL COMPARISON OF THE ACCURACY OF PROTEIN SOLUTION STRUCTURES JRNL TITL 2 DERIVED FROM CONVENTIONAL AND NETWORK-EDITED NOESY DATA. JRNL REF PROTEIN SCI. V. 4 2289 1995 JRNL REFN ISSN 0961-8368 JRNL PMID 8563625 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.KREZEL,P.DARBA,A.D.ROBERTSON,J.FEJZO,S.MACURA, REMARK 1 AUTH 2 J.L.MARKLEY REMARK 1 TITL SOLUTION STRUCTURE OF TURKEY OVOMUCOID THIRD DOMAIN AS REMARK 1 TITL 2 DETERMINED FROM NUCLEAR MAGNETIC RESONANCE DATA REMARK 1 REF J.MOL.BIOL. V. 242 203 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OMT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175477. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 17 TYR A 31 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 60.86 -101.56 REMARK 500 1 ALA A 3 -166.79 -117.34 REMARK 500 1 GLU A 10 42.02 -106.06 REMARK 500 1 THR A 17 -169.29 -63.79 REMARK 500 1 ARG A 21 82.26 -162.57 REMARK 500 1 ASN A 28 37.91 79.89 REMARK 500 1 ASN A 33 -166.64 -163.83 REMARK 500 1 LEU A 48 -71.45 -83.00 REMARK 500 1 THR A 49 138.35 60.78 REMARK 500 2 ALA A 2 -170.21 48.36 REMARK 500 2 ALA A 3 84.89 49.15 REMARK 500 2 SER A 5 130.33 -177.48 REMARK 500 2 CYS A 8 50.45 -97.91 REMARK 500 2 GLU A 10 43.18 -101.94 REMARK 500 2 ALA A 15 151.12 179.57 REMARK 500 2 THR A 17 -144.88 -64.62 REMARK 500 2 ASN A 28 16.50 84.83 REMARK 500 2 ASN A 33 -162.87 -162.41 REMARK 500 2 LEU A 48 -78.37 -82.41 REMARK 500 2 THR A 49 172.85 77.69 REMARK 500 3 ALA A 2 63.71 61.76 REMARK 500 3 SER A 5 124.20 -174.53 REMARK 500 3 CYS A 8 39.70 -156.20 REMARK 500 3 THR A 17 -176.17 -52.51 REMARK 500 3 ARG A 21 71.24 -160.54 REMARK 500 3 ASN A 28 10.15 88.97 REMARK 500 3 ASN A 33 -149.73 -172.47 REMARK 500 3 THR A 49 125.21 52.28 REMARK 500 3 HIS A 52 162.04 173.68 REMARK 500 4 ALA A 2 -44.93 -151.07 REMARK 500 4 ALA A 3 178.02 -59.01 REMARK 500 4 GLU A 10 30.16 -94.69 REMARK 500 4 ALA A 15 126.18 -174.93 REMARK 500 4 THR A 17 -150.26 -64.70 REMARK 500 4 ARG A 21 74.54 -151.41 REMARK 500 4 ASN A 28 30.40 85.29 REMARK 500 4 ASN A 33 -166.08 -162.50 REMARK 500 4 LEU A 48 -79.77 -79.74 REMARK 500 4 THR A 49 136.52 95.57 REMARK 500 5 ALA A 2 -174.62 -59.91 REMARK 500 5 SER A 5 149.59 175.01 REMARK 500 5 CYS A 8 42.06 -144.70 REMARK 500 5 ALA A 15 128.37 -170.83 REMARK 500 5 THR A 17 -177.62 -61.71 REMARK 500 5 ASN A 28 19.60 83.15 REMARK 500 5 THR A 49 126.34 57.66 REMARK 500 5 HIS A 52 163.47 154.46 REMARK 500 6 THR A 17 -164.74 -59.78 REMARK 500 6 ASN A 28 30.32 77.27 REMARK 500 6 ASN A 33 -157.06 -162.58 REMARK 500 REMARK 500 THIS ENTRY HAS 430 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.15 SIDE CHAIN REMARK 500 2 ARG A 21 0.15 SIDE CHAIN REMARK 500 3 ARG A 21 0.20 SIDE CHAIN REMARK 500 4 ARG A 21 0.30 SIDE CHAIN REMARK 500 5 ARG A 21 0.15 SIDE CHAIN REMARK 500 6 ARG A 21 0.21 SIDE CHAIN REMARK 500 7 ARG A 21 0.31 SIDE CHAIN REMARK 500 9 ARG A 21 0.32 SIDE CHAIN REMARK 500 10 ARG A 21 0.32 SIDE CHAIN REMARK 500 11 ARG A 21 0.32 SIDE CHAIN REMARK 500 12 ARG A 21 0.17 SIDE CHAIN REMARK 500 13 ARG A 21 0.32 SIDE CHAIN REMARK 500 14 ARG A 21 0.32 SIDE CHAIN REMARK 500 15 ARG A 21 0.27 SIDE CHAIN REMARK 500 16 ARG A 21 0.23 SIDE CHAIN REMARK 500 17 ARG A 21 0.09 SIDE CHAIN REMARK 500 18 ARG A 21 0.16 SIDE CHAIN REMARK 500 19 ARG A 21 0.32 SIDE CHAIN REMARK 500 20 ARG A 21 0.23 SIDE CHAIN REMARK 500 21 ARG A 21 0.31 SIDE CHAIN REMARK 500 22 ARG A 21 0.31 SIDE CHAIN REMARK 500 23 ARG A 21 0.14 SIDE CHAIN REMARK 500 25 ARG A 21 0.31 SIDE CHAIN REMARK 500 26 ARG A 21 0.29 SIDE CHAIN REMARK 500 27 ARG A 21 0.11 SIDE CHAIN REMARK 500 28 ARG A 21 0.24 SIDE CHAIN REMARK 500 29 ARG A 21 0.24 SIDE CHAIN REMARK 500 30 ARG A 21 0.27 SIDE CHAIN REMARK 500 31 ARG A 21 0.32 SIDE CHAIN REMARK 500 32 ARG A 21 0.20 SIDE CHAIN REMARK 500 33 ARG A 21 0.29 SIDE CHAIN REMARK 500 34 ARG A 21 0.20 SIDE CHAIN REMARK 500 35 ARG A 21 0.22 SIDE CHAIN REMARK 500 36 ARG A 21 0.31 SIDE CHAIN REMARK 500 37 ARG A 21 0.29 SIDE CHAIN REMARK 500 38 ARG A 21 0.29 SIDE CHAIN REMARK 500 39 ARG A 21 0.24 SIDE CHAIN REMARK 500 40 ARG A 21 0.09 SIDE CHAIN REMARK 500 41 ARG A 21 0.29 SIDE CHAIN REMARK 500 42 ARG A 21 0.31 SIDE CHAIN REMARK 500 43 ARG A 21 0.20 SIDE CHAIN REMARK 500 44 ARG A 21 0.31 SIDE CHAIN REMARK 500 45 ARG A 21 0.12 SIDE CHAIN REMARK 500 46 ARG A 21 0.24 SIDE CHAIN REMARK 500 47 ARG A 21 0.29 SIDE CHAIN REMARK 500 48 ARG A 21 0.10 SIDE CHAIN REMARK 500 49 ARG A 21 0.11 SIDE CHAIN REMARK 500 50 ARG A 21 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: REA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1OMT A 1 56 UNP P68390 IOVO_MELGA 130 185 SEQRES 1 A 56 LEU ALA ALA VAL SER VAL ASP CYS SER GLU TYR PRO LYS SEQRES 2 A 56 PRO ALA CYS THR LEU GLU TYR ARG PRO LEU CYS GLY SER SEQRES 3 A 56 ASP ASN LYS THR TYR GLY ASN LYS CYS ASN PHE CYS ASN SEQRES 4 A 56 ALA VAL VAL GLU SER ASN GLY THR LEU THR LEU SER HIS SEQRES 5 A 56 PHE GLY LYS CYS HELIX 1 1 CYS A 8 GLU A 10 5 3 HELIX 2 2 LYS A 34 SER A 44 1 11 SHEET 1 A 2 LEU A 23 GLY A 25 0 SHEET 2 A 2 LEU A 50 PHE A 53 -1 N HIS A 52 O CYS A 24 SSBOND 1 CYS A 8 CYS A 38 1555 1555 2.02 SSBOND 2 CYS A 16 CYS A 35 1555 1555 2.02 SSBOND 3 CYS A 24 CYS A 56 1555 1555 2.02 CISPEP 1 TYR A 11 PRO A 12 1 1.12 CISPEP 2 TYR A 11 PRO A 12 2 -0.23 CISPEP 3 TYR A 11 PRO A 12 3 1.24 CISPEP 4 TYR A 11 PRO A 12 4 0.15 CISPEP 5 TYR A 11 PRO A 12 5 1.90 CISPEP 6 TYR A 11 PRO A 12 6 0.91 CISPEP 7 TYR A 11 PRO A 12 7 1.97 CISPEP 8 TYR A 11 PRO A 12 8 2.23 CISPEP 9 TYR A 11 PRO A 12 9 3.12 CISPEP 10 TYR A 11 PRO A 12 10 2.14 CISPEP 11 TYR A 11 PRO A 12 11 2.19 CISPEP 12 TYR A 11 PRO A 12 12 2.21 CISPEP 13 TYR A 11 PRO A 12 13 2.96 CISPEP 14 TYR A 11 PRO A 12 14 2.59 CISPEP 15 TYR A 11 PRO A 12 15 2.37 CISPEP 16 TYR A 11 PRO A 12 16 1.80 CISPEP 17 TYR A 11 PRO A 12 17 2.19 CISPEP 18 TYR A 11 PRO A 12 18 2.10 CISPEP 19 TYR A 11 PRO A 12 19 1.99 CISPEP 20 TYR A 11 PRO A 12 20 2.20 CISPEP 21 TYR A 11 PRO A 12 21 2.25 CISPEP 22 TYR A 11 PRO A 12 22 2.45 CISPEP 23 TYR A 11 PRO A 12 23 1.47 CISPEP 24 TYR A 11 PRO A 12 24 3.47 CISPEP 25 TYR A 11 PRO A 12 25 0.21 CISPEP 26 TYR A 11 PRO A 12 26 3.15 CISPEP 27 TYR A 11 PRO A 12 27 1.85 CISPEP 28 TYR A 11 PRO A 12 28 3.19 CISPEP 29 TYR A 11 PRO A 12 29 2.04 CISPEP 30 TYR A 11 PRO A 12 30 3.07 CISPEP 31 TYR A 11 PRO A 12 31 1.95 CISPEP 32 TYR A 11 PRO A 12 32 2.07 CISPEP 33 TYR A 11 PRO A 12 33 1.91 CISPEP 34 TYR A 11 PRO A 12 34 1.61 CISPEP 35 TYR A 11 PRO A 12 35 2.93 CISPEP 36 TYR A 11 PRO A 12 36 2.11 CISPEP 37 TYR A 11 PRO A 12 37 2.36 CISPEP 38 TYR A 11 PRO A 12 38 2.70 CISPEP 39 TYR A 11 PRO A 12 39 0.94 CISPEP 40 TYR A 11 PRO A 12 40 2.30 CISPEP 41 TYR A 11 PRO A 12 41 2.03 CISPEP 42 TYR A 11 PRO A 12 42 1.71 CISPEP 43 TYR A 11 PRO A 12 43 1.80 CISPEP 44 TYR A 11 PRO A 12 44 2.49 CISPEP 45 TYR A 11 PRO A 12 45 2.48 CISPEP 46 TYR A 11 PRO A 12 46 1.22 CISPEP 47 TYR A 11 PRO A 12 47 1.51 CISPEP 48 TYR A 11 PRO A 12 48 0.71 CISPEP 49 TYR A 11 PRO A 12 49 0.84 CISPEP 50 TYR A 11 PRO A 12 50 2.23 SITE 1 REA 2 LEU A 18 GLU A 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1