HEADER TRANSFERASE 27-FEB-03 1ON6 TITLE CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINOTRANSFERASE TITLE 2 (EXTL2) IN COMPLEX WITH UDPGLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE EXTL2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: ALPHA-GALNACT EXTL2, EXT-RELATED PROTEIN 2, EXOSTOSIN-LIKE COMPND 6 2; COMPND 7 EC: 2.4.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EXTL2 OR EXTR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-2C KEYWDS ROSSMANN FOLD, DXD MOTIF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN,L.G.PEDERSEN, AUTHOR 2 K.SUGAHARA,M.NEGISHI REVDAT 4 16-AUG-23 1ON6 1 REMARK LINK REVDAT 3 11-OCT-17 1ON6 1 REMARK REVDAT 2 24-FEB-09 1ON6 1 VERSN REVDAT 1 22-APR-03 1ON6 0 JRNL AUTH L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN, JRNL AUTH 2 L.G.PEDERSEN,K.SUGAHARA,M.NEGISHI JRNL TITL CRYSTAL STRUCTURE OF AN JRNL TITL 2 ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2), A MEMBER JRNL TITL 3 OF THE EXOSTOSIN GENE FAMILY INVOLVED IN HEPARAN SULFATE JRNL TITL 4 BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 278 14420 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12562774 JRNL DOI 10.1074/JBC.M210532200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 27600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3389 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 173 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.830 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 48.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : UD1.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : EDO.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : UD1.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : EDO.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ON6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: APO ENZYME PDB:1OMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3000, MGCL2, CACODYLTATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.03200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.03200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.03200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.03200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.03200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.03200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.03200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.03200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL REMARK 300 UNIT IS NOT KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -278.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -126.06400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -63.03200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -63.03200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 63.03200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -63.03200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 38 REMARK 465 ASN A 39 REMARK 465 LEU A 40 REMARK 465 LEU A 41 REMARK 465 PRO A 42 REMARK 465 ASN A 43 REMARK 465 ILE A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 ASP A 47 REMARK 465 LYS A 48 REMARK 465 MET A 49 REMARK 465 LEU A 50 REMARK 465 THR A 51 REMARK 465 LEU A 52 REMARK 465 ARG A 53 REMARK 465 ARG A 54 REMARK 465 GLU A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 LYS A 61 REMARK 465 SER A 62 REMARK 465 LYS A 275 REMARK 465 GLU A 276 REMARK 465 THR A 277 REMARK 465 ASN A 278 REMARK 465 GLY A 279 REMARK 465 TYR A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 MET A 283 REMARK 465 TRP A 284 REMARK 465 HIS A 285 REMARK 465 SER A 328 REMARK 465 LYS A 329 REMARK 465 MET A 330 REMARK 465 THR B 38 REMARK 465 ASN B 39 REMARK 465 LEU B 40 REMARK 465 LEU B 41 REMARK 465 PRO B 42 REMARK 465 ASN B 43 REMARK 465 ILE B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 ASP B 47 REMARK 465 LYS B 48 REMARK 465 MET B 49 REMARK 465 LEU B 50 REMARK 465 THR B 51 REMARK 465 LEU B 52 REMARK 465 ARG B 53 REMARK 465 ARG B 54 REMARK 465 GLU B 55 REMARK 465 ILE B 56 REMARK 465 LYS B 57 REMARK 465 SER B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 THR B 277 REMARK 465 ASN B 278 REMARK 465 GLY B 279 REMARK 465 TYR B 280 REMARK 465 SER B 281 REMARK 465 GLY B 282 REMARK 465 MET B 283 REMARK 465 TRP B 284 REMARK 465 HIS B 285 REMARK 465 SER B 328 REMARK 465 LYS B 329 REMARK 465 MET B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 VAL A 103 CG1 CG2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 290 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 62 OG REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 37.27 -144.59 REMARK 500 PRO A 108 8.22 -53.48 REMARK 500 ASP A 152 36.74 -77.01 REMARK 500 PHE A 171 57.36 -145.22 REMARK 500 SER A 188 118.91 -29.72 REMARK 500 PRO A 203 -89.43 -43.11 REMARK 500 ALA A 216 66.19 -165.89 REMARK 500 ASP B 65 36.14 -96.32 REMARK 500 ASP B 152 31.41 -80.08 REMARK 500 SER B 188 123.44 -37.68 REMARK 500 PRO B 203 -71.46 -35.80 REMARK 500 ASN B 205 132.58 179.98 REMARK 500 ALA B 216 74.27 -164.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 600 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 OD2 REMARK 620 2 UD1 A 401 O2A 97.2 REMARK 620 3 UD1 A 401 O2B 167.4 87.9 REMARK 620 4 HOH A 656 O 85.4 93.4 105.8 REMARK 620 5 HOH A 690 O 84.3 167.4 88.3 99.3 REMARK 620 6 HOH A 691 O 82.9 93.9 85.3 166.9 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 153 OD2 REMARK 620 2 UD1 B 400 O2B 165.5 REMARK 620 3 UD1 B 400 O2A 78.6 87.0 REMARK 620 4 HOH B 654 O 107.7 86.2 169.1 REMARK 620 5 HOH B 683 O 79.7 97.3 85.2 87.2 REMARK 620 6 HOH B 684 O 85.8 96.3 90.2 99.0 165.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO ENZYME REMARK 900 RELATED ID: 1OMZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENZYME WITH UDPGALNAC BOUND REMARK 900 RELATED ID: 1ON8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENZYME WITH UDP AND ACCEPTOR SUBSTRATE ANALOG REMARK 900 BOUND REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALTHOUGH THE CATALYTIC DOMAIN CONTAINING REMARK 999 RESIDUES 38-330 WERE CLONED INTO THE REMARK 999 EXPRESSION SYSTEM, THE EXACT N-TERMINI OF REMARK 999 THE FINAL PRODUCT IS NOT KNOWN DUE TO REMARK 999 CLEAVAGE OF THE FUSION PROTEIN WITH A REMARK 999 NON-SPECIFIC PROTEASE. HOWEVER THERE IS REMARK 999 ELECTRON DENSITY STARTING AT RESIDUE 62. DBREF 1ON6 A 38 330 UNP Q9ES89 EXTL2_MOUSE 38 330 DBREF 1ON6 B 38 330 UNP Q9ES89 EXTL2_MOUSE 38 330 SEQRES 1 A 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 A 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 A 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 A 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 A 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 A 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 A 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 A 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 A 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 A 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 A 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 A 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 A 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 A 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 A 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 A 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 A 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 A 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 A 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 A 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 A 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 A 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 A 293 ALA ASN HIS LYS SER LYS MET SEQRES 1 B 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 B 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 B 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 B 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 B 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 B 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 B 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 B 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 B 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 B 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 B 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 B 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 B 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 B 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 B 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 B 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 B 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 B 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 B 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 B 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 B 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 B 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 B 293 ALA ASN HIS LYS SER LYS MET HET MN A 600 1 HET UD1 A 401 39 HET EDO A 501 4 HET MN B 601 1 HET UD1 B 400 39 HET EDO B 502 4 HETNAM MN MANGANESE (II) ION HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 UD1 2(C17 H27 N3 O17 P2) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *202(H2 O) HELIX 1 1 ARG A 76 GLN A 88 1 13 HELIX 2 2 PRO A 108 LEU A 115 1 8 HELIX 3 3 LYS A 131 GLN A 137 5 7 HELIX 4 4 SER A 157 GLN A 169 1 13 HELIX 5 5 SER A 221 LYS A 229 1 9 HELIX 6 6 PRO A 231 GLN A 242 1 12 HELIX 7 7 CYS A 244 GLY A 258 1 15 HELIX 8 8 GLU A 288 ASP A 305 1 18 HELIX 9 9 SER B 62 ASP B 65 5 4 HELIX 10 10 ARG B 76 GLN B 88 1 13 HELIX 11 11 PRO B 108 LEU B 115 1 8 HELIX 12 12 LYS B 131 GLN B 137 5 7 HELIX 13 13 SER B 157 PHE B 171 1 15 HELIX 14 14 SER B 221 LYS B 229 1 9 HELIX 15 15 PRO B 231 GLN B 242 1 12 HELIX 16 16 CYS B 244 GLY B 258 1 15 HELIX 17 17 ALA B 287 TYR B 304 1 18 SHEET 1 A16 VAL A 122 PRO A 126 0 SHEET 2 A16 LEU A 93 TRP A 100 1 N VAL A 96 O ILE A 123 SHEET 3 A16 PHE A 67 THR A 73 1 N LEU A 69 O ILE A 97 SHEET 4 A16 ALA A 146 VAL A 150 1 O LEU A 148 N THR A 68 SHEET 5 A16 ALA A 216 ASN A 220 -1 O SER A 217 N MET A 149 SHEET 6 A16 ILE A 175 GLY A 177 -1 N ILE A 176 O PHE A 218 SHEET 7 A16 GLY A 262 VAL A 265 1 O VAL A 265 N GLY A 177 SHEET 8 A16 ILE A 314 GLN A 318 1 O ILE A 316 N PHE A 264 SHEET 9 A16 ILE B 314 GLN B 318 -1 O SER B 317 N MET A 315 SHEET 10 A16 GLY B 262 VAL B 265 1 N PHE B 264 O ILE B 316 SHEET 11 A16 ILE B 175 GLY B 177 1 N GLY B 177 O VAL B 265 SHEET 12 A16 ALA B 216 ASN B 220 -1 O PHE B 218 N ILE B 176 SHEET 13 A16 ALA B 146 VAL B 150 -1 N MET B 149 O SER B 217 SHEET 14 A16 PHE B 67 THR B 73 1 N THR B 68 O LEU B 148 SHEET 15 A16 LEU B 93 TRP B 100 1 O ILE B 97 N LEU B 69 SHEET 16 A16 VAL B 122 PRO B 126 1 O ILE B 123 N VAL B 96 SHEET 1 B 2 THR A 154 ILE A 156 0 SHEET 2 B 2 MET A 270 ASN A 272 -1 O VAL A 271 N LEU A 155 SHEET 1 C 3 ILE A 190 GLY A 194 0 SHEET 2 C 3 PRO A 180 SER A 187 -1 N SER A 187 O ILE A 190 SHEET 3 C 3 MET A 211 VAL A 212 -1 O MET A 211 N ARG A 181 SHEET 1 D 2 THR B 154 ILE B 156 0 SHEET 2 D 2 MET B 270 ASN B 272 -1 O VAL B 271 N LEU B 155 SHEET 1 E 3 ILE B 190 GLY B 194 0 SHEET 2 E 3 PRO B 180 SER B 187 -1 N SER B 187 O ILE B 190 SHEET 3 E 3 MET B 211 VAL B 212 -1 O MET B 211 N ARG B 181 SSBOND 1 CYS A 244 CYS A 296 1555 1555 2.02 SSBOND 2 CYS B 244 CYS B 296 1555 1555 2.02 LINK OD2 ASP A 153 MN MN A 600 1555 1555 2.34 LINK O2A UD1 A 401 MN MN A 600 1555 1555 2.09 LINK O2B UD1 A 401 MN MN A 600 1555 1555 2.09 LINK MN MN A 600 O HOH A 656 1555 1555 2.45 LINK MN MN A 600 O HOH A 690 1555 1555 2.15 LINK MN MN A 600 O HOH A 691 1555 1555 2.32 LINK OD2 ASP B 153 MN MN B 601 1555 1555 1.98 LINK O2B UD1 B 400 MN MN B 601 1555 1555 1.98 LINK O2A UD1 B 400 MN MN B 601 1555 1555 2.30 LINK MN MN B 601 O HOH B 654 1555 1555 2.28 LINK MN MN B 601 O HOH B 683 1555 1555 2.37 LINK MN MN B 601 O HOH B 684 1555 1555 2.33 CISPEP 1 GLY A 116 PRO A 117 0 0.08 CISPEP 2 PHE A 321 PRO A 322 0 0.19 CISPEP 3 GLY B 116 PRO B 117 0 -0.14 CISPEP 4 PHE B 321 PRO B 322 0 0.01 SITE 1 AC1 5 ASP A 153 UD1 A 401 HOH A 656 HOH A 690 SITE 2 AC1 5 HOH A 691 SITE 1 AC2 5 ASP B 153 UD1 B 400 HOH B 654 HOH B 683 SITE 2 AC2 5 HOH B 684 SITE 1 AC3 22 GLN B 72 THR B 73 TYR B 74 ARG B 76 SITE 2 AC3 22 ASN B 101 ASN B 130 MET B 132 ARG B 135 SITE 3 AC3 22 ASP B 151 ASP B 152 ASP B 153 LEU B 213 SITE 4 AC3 22 ASN B 243 ASP B 245 ASP B 246 HIS B 289 SITE 5 AC3 22 ARG B 293 MN B 601 HOH B 602 HOH B 642 SITE 6 AC3 22 HOH B 654 HOH B 673 SITE 1 AC4 22 GLN A 72 THR A 73 TYR A 74 ARG A 76 SITE 2 AC4 22 ASN A 101 ASN A 130 MET A 132 ARG A 135 SITE 3 AC4 22 ASP A 151 ASP A 152 ASP A 153 LEU A 213 SITE 4 AC4 22 GLY A 215 ASP A 245 ASP A 246 HIS A 289 SITE 5 AC4 22 ARG A 293 MN A 600 HOH A 617 HOH A 630 SITE 6 AC4 22 HOH A 690 HOH A 691 SITE 1 AC5 6 PHE A 171 GLN A 174 PRO A 260 ILE A 263 SITE 2 AC5 6 HOH A 631 GLN B 170 SITE 1 AC6 7 GLN A 170 PHE A 171 PHE B 171 GLN B 174 SITE 2 AC6 7 PRO B 260 ILE B 314 HOH B 633 CRYST1 126.064 126.064 83.936 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011914 0.00000