HEADER TRANSFERASE 27-FEB-03 1ON8 TITLE CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE TITLE 2 (EXTL2) WITH UDP AND GLCUAB(1-3)GALB(1-O)-NAPHTHALENELMETHANOL AN TITLE 3 ACCEPTOR SUBSTRATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE EXTL2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: ALPHA-GALNACT EXTL2, EXT-RELATED PROTEIN 2, EXOSTOSIN-LIKE COMPND 6 2; COMPND 7 EC: 2.4.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EXTL2 OR EXTR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-2C KEYWDS ROSSMANN FOLD, DXD MOTIF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN,L.G.PEDERSEN, AUTHOR 2 K.SUGAHARA,M.NEGISHI REVDAT 7 16-AUG-23 1ON8 1 HETSYN REVDAT 6 29-JUL-20 1ON8 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 11-OCT-17 1ON8 1 REMARK REVDAT 4 13-JUL-11 1ON8 1 VERSN REVDAT 3 23-JUN-10 1ON8 1 FORMUL REVDAT 2 24-FEB-09 1ON8 1 VERSN REVDAT 1 22-APR-03 1ON8 0 JRNL AUTH L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN, JRNL AUTH 2 L.G.PEDERSEN,K.SUGAHARA,M.NEGISHI JRNL TITL CRYSTAL STRUCTURE OF AN JRNL TITL 2 ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2), A MEMBER JRNL TITL 3 OF THE EXOSTOSIN GENE FAMILY INVOLVED IN HEPARAN SULFATE JRNL TITL 4 BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 278 14420 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12562774 JRNL DOI 10.1074/JBC.M210532200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2733 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.520 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 23.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : EDO_ION.PARAM REMARK 3 PARAMETER FILE 3 : UDP2.PAR REMARK 3 PARAMETER FILE 4 : GAG.PAR REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : EDO.TOP REMARK 3 TOPOLOGY FILE 4 : UDP2.TOP REMARK 3 TOPOLOGY FILE 5 : GAG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ON8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39300 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB CODE: 1OMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3000, MGCL2, CACODYLATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.57850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.57850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.57850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.57850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL REMARK 300 UNIT IS NOT KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -125.15700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -62.57850 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -62.57850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 62.57850 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -62.57850 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 38 REMARK 465 ASN A 39 REMARK 465 LEU A 40 REMARK 465 LEU A 41 REMARK 465 PRO A 42 REMARK 465 ASN A 43 REMARK 465 ILE A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 ASP A 47 REMARK 465 LYS A 48 REMARK 465 MET A 49 REMARK 465 LEU A 50 REMARK 465 THR A 51 REMARK 465 LEU A 52 REMARK 465 ARG A 53 REMARK 465 ARG A 54 REMARK 465 GLU A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 LYS A 61 REMARK 465 SER A 62 REMARK 465 SER A 328 REMARK 465 LYS A 329 REMARK 465 MET A 330 REMARK 465 THR B 38 REMARK 465 ASN B 39 REMARK 465 LEU B 40 REMARK 465 LEU B 41 REMARK 465 PRO B 42 REMARK 465 ASN B 43 REMARK 465 ILE B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 ASP B 47 REMARK 465 LYS B 48 REMARK 465 MET B 49 REMARK 465 LEU B 50 REMARK 465 THR B 51 REMARK 465 LEU B 52 REMARK 465 ARG B 53 REMARK 465 ARG B 54 REMARK 465 GLU B 55 REMARK 465 ILE B 56 REMARK 465 LYS B 57 REMARK 465 SER B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 SER B 62 REMARK 465 ASN B 278 REMARK 465 GLY B 279 REMARK 465 TYR B 280 REMARK 465 SER B 328 REMARK 465 LYS B 329 REMARK 465 MET B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 VAL A 103 CG1 CG2 REMARK 470 SER A 188 OG REMARK 470 ASN A 278 CG OD1 ND2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 SER B 188 OG REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 203 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO B 203 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 25.62 -151.95 REMARK 500 ASP A 152 41.36 -79.47 REMARK 500 ASP A 153 15.81 -152.29 REMARK 500 PHE A 171 56.71 -152.85 REMARK 500 SER A 188 114.68 -38.32 REMARK 500 PRO A 203 -89.24 -52.45 REMARK 500 ALA A 216 67.62 -162.46 REMARK 500 CYS A 244 38.64 39.58 REMARK 500 ASN A 269 85.39 -155.86 REMARK 500 HIS A 289 -70.68 -60.52 REMARK 500 ARG B 76 33.64 -146.11 REMARK 500 ASP B 152 38.23 -86.52 REMARK 500 PHE B 171 62.79 -154.48 REMARK 500 SER B 188 122.83 -31.65 REMARK 500 PRO B 203 -92.32 -34.94 REMARK 500 ALA B 216 66.94 -162.31 REMARK 500 CYS B 244 -2.37 82.61 REMARK 500 GLU B 276 85.63 -64.90 REMARK 500 LEU B 309 136.12 -38.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THERE IS NO ELECTRON DENSITY FOR THE NAPTHALENELMETHANOL REMARK 600 MOIETY. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 600 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 OD2 REMARK 620 2 UDP A 351 O3B 160.3 REMARK 620 3 UDP A 351 O2A 98.4 100.1 REMARK 620 4 HOH A 604 O 79.0 98.2 78.8 REMARK 620 5 HOH A 605 O 86.7 95.0 104.2 165.7 REMARK 620 6 HOH A 606 O 71.6 88.8 162.8 85.4 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 153 OD2 REMARK 620 2 UDP B 352 O3B 162.0 REMARK 620 3 UDP B 352 O2A 99.6 96.3 REMARK 620 4 HOH B 613 O 88.2 90.0 68.3 REMARK 620 5 HOH B 614 O 89.2 95.9 101.1 168.4 REMARK 620 6 HOH B 615 O 84.6 77.5 157.5 89.9 101.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMX RELATED DB: PDB REMARK 900 APO ENZYME REMARK 900 RELATED ID: 1OMZ RELATED DB: PDB REMARK 900 WITH DONOR SUBSTRATE UDPGALNAC REMARK 900 RELATED ID: 1ON6 RELATED DB: PDB REMARK 900 WITH DONOR SUBSTRATE UDPGLCNAC REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALTHOUGH THE CATALYTIC DOMAIN CONTAINING REMARK 999 RESIDUES 38-330 WERE CLONED INTO THE REMARK 999 EXPRESSION SYSTEM, THE EXACT N-TERMINI OF REMARK 999 THE FINAL PRODUCT IS NOT KNOWN DUE TO REMARK 999 CLEAVAGE OF THE FUSION PROTEIN WITH A REMARK 999 NON-SPECIFIC PROTEASE. HOWEVER THERE IS REMARK 999 ELECTRON DENSITY STARTING AT RESIDUE 62. DBREF 1ON8 A 38 330 UNP Q9ES89 EXL2_MOUSE 38 330 DBREF 1ON8 B 38 330 UNP Q9ES89 EXL2_MOUSE 38 330 SEQRES 1 A 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 A 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 A 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 A 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 A 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 A 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 A 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 A 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 A 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 A 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 A 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 A 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 A 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 A 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 A 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 A 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 A 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 A 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 A 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 A 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 A 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 A 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 A 293 ALA ASN HIS LYS SER LYS MET SEQRES 1 B 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 B 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 B 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 B 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 B 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 B 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 B 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 B 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 B 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 B 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 B 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 B 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 B 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 B 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 B 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 B 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 B 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 B 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 B 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 B 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 B 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 B 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 B 293 ALA ASN HIS LYS SER LYS MET HET GAL C 1 12 HET BDP C 2 12 HET GAL D 1 12 HET BDP D 2 12 HET MN A 600 1 HET UDP A 351 25 HET EDO A 401 4 HET MN B 601 1 HET UDP B 352 25 HET EDO B 402 4 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 BDP 2(C6 H10 O7) FORMUL 5 MN 2(MN 2+) FORMUL 6 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 HOH *97(H2 O) HELIX 1 1 ARG A 76 GLN A 88 1 13 HELIX 2 2 PRO A 108 LEU A 115 1 8 HELIX 3 3 LYS A 131 GLN A 137 5 7 HELIX 4 4 SER A 157 GLN A 169 1 13 HELIX 5 5 SER A 221 LYS A 229 1 9 HELIX 6 6 PRO A 231 GLN A 242 1 12 HELIX 7 7 CYS A 244 GLY A 258 1 15 HELIX 8 9 GLU A 288 TYR A 304 1 17 HELIX 9 10 ARG B 76 GLN B 88 1 13 HELIX 10 11 PRO B 108 LEU B 115 1 8 HELIX 11 12 LYS B 131 GLN B 137 5 7 HELIX 12 13 SER B 157 GLN B 169 1 13 HELIX 13 14 SER B 221 LYS B 229 1 9 HELIX 14 15 PRO B 231 GLN B 242 1 12 HELIX 15 16 CYS B 244 GLY B 258 1 15 HELIX 16 17 GLU B 288 TYR B 304 1 17 SHEET 1 A16 VAL A 122 PRO A 126 0 SHEET 2 A16 LEU A 93 TRP A 100 1 N VAL A 96 O ILE A 123 SHEET 3 A16 PHE A 67 THR A 73 1 N LEU A 69 O ILE A 97 SHEET 4 A16 ALA A 146 VAL A 150 1 O LEU A 148 N THR A 68 SHEET 5 A16 ALA A 216 ASN A 220 -1 O SER A 217 N MET A 149 SHEET 6 A16 ILE A 175 GLY A 177 -1 N ILE A 176 O PHE A 218 SHEET 7 A16 GLY A 262 VAL A 265 1 O VAL A 265 N GLY A 177 SHEET 8 A16 ILE A 314 GLN A 318 1 O ILE A 316 N PHE A 264 SHEET 9 A16 ILE B 314 GLN B 318 -1 O SER B 317 N MET A 315 SHEET 10 A16 GLY B 262 VAL B 265 1 N PHE B 264 O ILE B 316 SHEET 11 A16 ILE B 175 GLY B 177 1 N ILE B 175 O ILE B 263 SHEET 12 A16 ALA B 216 ASN B 220 -1 O PHE B 218 N ILE B 176 SHEET 13 A16 ALA B 146 VAL B 150 -1 N MET B 149 O SER B 217 SHEET 14 A16 PHE B 67 THR B 73 1 N THR B 68 O LEU B 148 SHEET 15 A16 LEU B 93 TRP B 100 1 O HIS B 94 N PHE B 67 SHEET 16 A16 VAL B 122 PRO B 126 1 O ILE B 123 N VAL B 96 SHEET 1 B 2 THR A 154 ILE A 156 0 SHEET 2 B 2 MET A 270 ASN A 272 -1 O VAL A 271 N LEU A 155 SHEET 1 C 3 ILE A 190 GLY A 194 0 SHEET 2 C 3 PRO A 180 SER A 187 -1 N SER A 187 O ILE A 190 SHEET 3 C 3 MET A 211 VAL A 212 -1 O MET A 211 N ARG A 181 SHEET 1 D 2 THR B 154 ILE B 156 0 SHEET 2 D 2 MET B 270 ASN B 272 -1 O VAL B 271 N LEU B 155 SHEET 1 E 3 TYR B 191 GLY B 194 0 SHEET 2 E 3 PRO B 180 SER B 185 -1 N LYS B 182 O GLY B 194 SHEET 3 E 3 MET B 211 VAL B 212 -1 O MET B 211 N ARG B 181 SSBOND 1 CYS A 244 CYS A 296 1555 1555 2.03 SSBOND 2 CYS B 244 CYS B 296 1555 1555 2.02 LINK O3 GAL C 1 C1 BDP C 2 1555 1555 1.47 LINK O3 GAL D 1 C1 BDP D 2 1555 1555 1.47 LINK OD2 ASP A 153 MN MN A 600 1555 1555 2.58 LINK O3B UDP A 351 MN MN A 600 1555 1555 2.03 LINK O2A UDP A 351 MN MN A 600 1555 1555 2.16 LINK MN MN A 600 O HOH A 604 1555 1555 2.17 LINK MN MN A 600 O HOH A 605 1555 1555 2.08 LINK MN MN A 600 O HOH A 606 1555 1555 2.22 LINK OD2 ASP B 153 MN MN B 601 1555 1555 2.39 LINK O3B UDP B 352 MN MN B 601 1555 1555 2.00 LINK O2A UDP B 352 MN MN B 601 1555 1555 2.37 LINK MN MN B 601 O HOH B 613 1555 1555 2.20 LINK MN MN B 601 O HOH B 614 1555 1555 2.23 LINK MN MN B 601 O HOH B 615 1555 1555 2.52 CISPEP 1 GLY A 116 PRO A 117 0 0.23 CISPEP 2 PHE A 321 PRO A 322 0 0.21 CISPEP 3 GLY B 116 PRO B 117 0 -0.03 CISPEP 4 PHE B 321 PRO B 322 0 0.39 CRYST1 125.157 125.157 83.692 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011949 0.00000