HEADER TRANSFERASE 04-MAR-03 1OOZ TITLE DELETION MUTANT OF SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG TITLE 2 HEART COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUCCINYL COA:3-OXOACID COA-TRANSFERASE; COMPND 5 EC: 2.8.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 GENE: OXCT OR SCOT; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS ALPHA/BETA PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.COROS,L.SWENSON,W.T.WOLODKO,M.E.FRASER REVDAT 5 16-AUG-23 1OOZ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1OOZ 1 VERSN REVDAT 3 24-FEB-09 1OOZ 1 VERSN REVDAT 2 22-FEB-05 1OOZ 1 JRNL REVDAT 1 27-APR-04 1OOZ 0 JRNL AUTH A.M.COROS,L.SWENSON,W.T.WOLODKO,M.E.FRASER JRNL TITL STRUCTURE OF THE COA TRANSFERASE FROM PIG HEART TO 1.7 A JRNL TITL 2 RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1717 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15388917 JRNL DOI 10.1107/S0907444904017974 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 51992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5219 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6780 REMARK 3 BIN R VALUE (WORKING SET) : 0.1520 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 726 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 782 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.05 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.170 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 45.86 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GE 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1OOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, SODIUM/POTASSIUM PHOSPHATE, REMARK 280 SODIUM AZIDE , PH 7.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.55600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.40950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.55600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER, GENERATED BY THE TWO- REMARK 300 FOLD AXIS: 1-X, -Y,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.81900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 LYS A 257 REMARK 465 LEU A 258 REMARK 465 GLY A 259 REMARK 465 ILE A 376 REMARK 465 PRO A 377 REMARK 465 GLY A 378 REMARK 465 LYS A 379 REMARK 465 LEU A 380 REMARK 465 LYS B 253 REMARK 465 GLU B 254 REMARK 465 SER B 255 REMARK 465 GLY B 256 REMARK 465 LYS B 257 REMARK 465 LEU B 258 REMARK 465 GLY B 259 REMARK 465 ILE B 376 REMARK 465 PRO B 377 REMARK 465 GLY B 378 REMARK 465 LYS B 379 REMARK 465 LEU B 380 REMARK 465 VAL B 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 196 CB CYS A 196 SG -0.103 REMARK 500 MET B 72 CG MET B 72 SD -0.160 REMARK 500 CYS B 196 CB CYS B 196 SG -0.135 REMARK 500 GLU B 305 CD GLU B 305 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 CYS A 196 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 351 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 351 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 429 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 429 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 79 51.61 71.93 REMARK 500 ASN A 80 104.68 -170.27 REMARK 500 LYS A 186 -130.87 47.48 REMARK 500 ASN A 190 -111.64 25.76 REMARK 500 ASN A 373 28.05 -155.46 REMARK 500 ASP B 138 0.51 -67.10 REMARK 500 LYS B 186 -132.62 49.16 REMARK 500 ASN B 190 -113.10 25.31 REMARK 500 ASN B 373 27.74 -155.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 226 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 482 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 393 O REMARK 620 2 THR A 396 O 73.5 REMARK 620 3 CYS A 426 O 119.4 124.6 REMARK 620 4 ASN A 428 OD1 157.8 84.2 73.2 REMARK 620 5 HOH A 599 O 60.1 111.2 59.7 131.1 REMARK 620 6 HOH A 840 O 104.5 137.9 93.6 92.1 102.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 483 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 424 O REMARK 620 2 GLN A 425 O 63.3 REMARK 620 3 HOH A 637 O 94.5 71.1 REMARK 620 4 HOH A 680 O 76.2 131.7 87.8 REMARK 620 5 HOH A 732 O 120.2 69.0 102.4 159.3 REMARK 620 6 HOH A 738 O 168.8 122.9 96.5 101.8 59.5 REMARK 620 7 HOH A 777 O 85.7 112.2 176.3 88.6 80.7 83.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 482 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 393 O REMARK 620 2 THR B 396 O 70.3 REMARK 620 3 CYS B 426 O 123.0 128.9 REMARK 620 4 ASN B 428 OD1 151.9 82.0 78.3 REMARK 620 5 HOH B 577 O 57.0 111.2 66.5 143.0 REMARK 620 6 HOH B 666 O 105.0 118.5 105.5 83.8 115.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 483 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M3E RELATED DB: PDB REMARK 900 SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART REMARK 900 (SELENOMETHIONINE) MONOCLINIC SPACE GROUP P21 REMARK 900 RELATED ID: 1OOY RELATED DB: PDB REMARK 900 SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART ORTHORHOMBIC REMARK 900 SPACE GROUP P21212 DBREF 1OOZ A 1 481 UNP Q29551 SCOT_PIG 40 520 DBREF 1OOZ B 1 481 UNP Q29551 SCOT_PIG 40 520 SEQADV 1OOZ A UNP Q29551 GLU 288 DELETION SEQADV 1OOZ A UNP Q29551 ASP 289 DELETION SEQADV 1OOZ A UNP Q29551 VAL 290 DELETION SEQADV 1OOZ A UNP Q29551 LYS 291 DELETION SEQADV 1OOZ A UNP Q29551 THR 292 DELETION SEQADV 1OOZ A UNP Q29551 ARG 293 DELETION SEQADV 1OOZ B UNP Q29551 GLU 288 DELETION SEQADV 1OOZ B UNP Q29551 ASP 289 DELETION SEQADV 1OOZ B UNP Q29551 VAL 290 DELETION SEQADV 1OOZ B UNP Q29551 LYS 291 DELETION SEQADV 1OOZ B UNP Q29551 THR 292 DELETION SEQADV 1OOZ B UNP Q29551 ARG 293 DELETION SEQRES 1 A 475 THR LYS PHE TYR THR ASP ALA VAL GLU ALA VAL LYS ASP SEQRES 2 A 475 ILE PRO ASN GLY ALA THR VAL LEU VAL GLY GLY PHE GLY SEQRES 3 A 475 LEU CYS GLY ILE PRO GLU ASN LEU ILE GLY ALA LEU LEU SEQRES 4 A 475 LYS THR GLY VAL LYS GLU LEU THR ALA VAL SER ASN ASN SEQRES 5 A 475 ALA GLY VAL ASP ASN PHE GLY LEU GLY LEU LEU LEU GLN SEQRES 6 A 475 SER LYS GLN ILE LYS ARG MET ILE SER SER TYR VAL GLY SEQRES 7 A 475 GLU ASN ALA GLU PHE GLU ARG GLN TYR LEU ALA GLY GLU SEQRES 8 A 475 LEU GLU VAL GLU LEU THR PRO GLN GLY THR LEU ALA GLU SEQRES 9 A 475 ARG ILE ARG ALA GLY GLY ALA GLY VAL PRO ALA PHE TYR SEQRES 10 A 475 THR SER THR GLY TYR GLY THR LEU VAL GLN GLU GLY GLY SEQRES 11 A 475 SER PRO ILE LYS TYR ASN LYS ASP GLY SER ILE ALA ILE SEQRES 12 A 475 ALA SER LYS PRO ARG GLU VAL ARG GLU PHE ASN GLY GLN SEQRES 13 A 475 HIS PHE ILE LEU GLU GLU ALA ILE ARG GLY ASP PHE ALA SEQRES 14 A 475 LEU VAL LYS ALA TRP LYS ALA ASP GLN ALA GLY ASN VAL SEQRES 15 A 475 THR PHE ARG LYS SER ALA ARG ASN PHE ASN LEU PRO MET SEQRES 16 A 475 CYS LYS ALA ALA GLU THR THR VAL VAL GLU VAL GLU GLU SEQRES 17 A 475 ILE VAL ASP ILE GLY SER PHE ALA PRO GLU ASP ILE HIS SEQRES 18 A 475 ILE PRO LYS ILE TYR VAL HIS ARG LEU VAL LYS GLY GLU SEQRES 19 A 475 LYS TYR GLU LYS ARG ILE GLU ARG LEU SER VAL ARG LYS SEQRES 20 A 475 GLU SER GLY LYS LEU GLY ASP ASN VAL ARG GLU ARG ILE SEQRES 21 A 475 ILE LYS ARG ALA ALA LEU GLU PHE GLU ASP GLY MET TYR SEQRES 22 A 475 ALA ASN LEU GLY ILE GLY ILE PRO LEU LEU ALA SER ASN SEQRES 23 A 475 PHE ILE SER PRO ASN MET THR VAL HIS LEU GLN SER GLU SEQRES 24 A 475 ASN GLY ILE LEU GLY LEU GLY PRO TYR PRO LEU GLN ASN SEQRES 25 A 475 GLU VAL ASP ALA ASP LEU ILE ASN ALA GLY LYS GLU THR SEQRES 26 A 475 VAL THR VAL LEU PRO GLY ALA SER TYR PHE SER SER ASP SEQRES 27 A 475 GLU SER PHE ALA MET ILE ARG GLY GLY HIS VAL ASN LEU SEQRES 28 A 475 THR MET LEU GLY ALA MET GLN VAL SER LYS TYR GLY ASP SEQRES 29 A 475 LEU ALA ASN TRP MET ILE PRO GLY LYS LEU VAL LYS GLY SEQRES 30 A 475 MET GLY GLY ALA MET ASP LEU VAL SER SER ALA LYS THR SEQRES 31 A 475 LYS VAL VAL VAL THR MET GLU HIS SER ALA LYS GLY ASN SEQRES 32 A 475 ALA HIS LYS ILE MET GLU LYS CYS THR LEU PRO LEU THR SEQRES 33 A 475 GLY LYS GLN CYS VAL ASN ARG ILE ILE THR GLU LYS ALA SEQRES 34 A 475 VAL PHE ASP VAL ASP ARG LYS LYS GLY LEU THR LEU ILE SEQRES 35 A 475 GLU LEU TRP GLU GLY LEU THR VAL ASP ASP ILE LYS LYS SEQRES 36 A 475 SER THR GLY CYS ASP PHE ALA VAL SER PRO LYS LEU ILE SEQRES 37 A 475 PRO MET GLN GLN VAL THR THR SEQRES 1 B 475 THR LYS PHE TYR THR ASP ALA VAL GLU ALA VAL LYS ASP SEQRES 2 B 475 ILE PRO ASN GLY ALA THR VAL LEU VAL GLY GLY PHE GLY SEQRES 3 B 475 LEU CYS GLY ILE PRO GLU ASN LEU ILE GLY ALA LEU LEU SEQRES 4 B 475 LYS THR GLY VAL LYS GLU LEU THR ALA VAL SER ASN ASN SEQRES 5 B 475 ALA GLY VAL ASP ASN PHE GLY LEU GLY LEU LEU LEU GLN SEQRES 6 B 475 SER LYS GLN ILE LYS ARG MET ILE SER SER TYR VAL GLY SEQRES 7 B 475 GLU ASN ALA GLU PHE GLU ARG GLN TYR LEU ALA GLY GLU SEQRES 8 B 475 LEU GLU VAL GLU LEU THR PRO GLN GLY THR LEU ALA GLU SEQRES 9 B 475 ARG ILE ARG ALA GLY GLY ALA GLY VAL PRO ALA PHE TYR SEQRES 10 B 475 THR SER THR GLY TYR GLY THR LEU VAL GLN GLU GLY GLY SEQRES 11 B 475 SER PRO ILE LYS TYR ASN LYS ASP GLY SER ILE ALA ILE SEQRES 12 B 475 ALA SER LYS PRO ARG GLU VAL ARG GLU PHE ASN GLY GLN SEQRES 13 B 475 HIS PHE ILE LEU GLU GLU ALA ILE ARG GLY ASP PHE ALA SEQRES 14 B 475 LEU VAL LYS ALA TRP LYS ALA ASP GLN ALA GLY ASN VAL SEQRES 15 B 475 THR PHE ARG LYS SER ALA ARG ASN PHE ASN LEU PRO MET SEQRES 16 B 475 CYS LYS ALA ALA GLU THR THR VAL VAL GLU VAL GLU GLU SEQRES 17 B 475 ILE VAL ASP ILE GLY SER PHE ALA PRO GLU ASP ILE HIS SEQRES 18 B 475 ILE PRO LYS ILE TYR VAL HIS ARG LEU VAL LYS GLY GLU SEQRES 19 B 475 LYS TYR GLU LYS ARG ILE GLU ARG LEU SER VAL ARG LYS SEQRES 20 B 475 GLU SER GLY LYS LEU GLY ASP ASN VAL ARG GLU ARG ILE SEQRES 21 B 475 ILE LYS ARG ALA ALA LEU GLU PHE GLU ASP GLY MET TYR SEQRES 22 B 475 ALA ASN LEU GLY ILE GLY ILE PRO LEU LEU ALA SER ASN SEQRES 23 B 475 PHE ILE SER PRO ASN MET THR VAL HIS LEU GLN SER GLU SEQRES 24 B 475 ASN GLY ILE LEU GLY LEU GLY PRO TYR PRO LEU GLN ASN SEQRES 25 B 475 GLU VAL ASP ALA ASP LEU ILE ASN ALA GLY LYS GLU THR SEQRES 26 B 475 VAL THR VAL LEU PRO GLY ALA SER TYR PHE SER SER ASP SEQRES 27 B 475 GLU SER PHE ALA MET ILE ARG GLY GLY HIS VAL ASN LEU SEQRES 28 B 475 THR MET LEU GLY ALA MET GLN VAL SER LYS TYR GLY ASP SEQRES 29 B 475 LEU ALA ASN TRP MET ILE PRO GLY LYS LEU VAL LYS GLY SEQRES 30 B 475 MET GLY GLY ALA MET ASP LEU VAL SER SER ALA LYS THR SEQRES 31 B 475 LYS VAL VAL VAL THR MET GLU HIS SER ALA LYS GLY ASN SEQRES 32 B 475 ALA HIS LYS ILE MET GLU LYS CYS THR LEU PRO LEU THR SEQRES 33 B 475 GLY LYS GLN CYS VAL ASN ARG ILE ILE THR GLU LYS ALA SEQRES 34 B 475 VAL PHE ASP VAL ASP ARG LYS LYS GLY LEU THR LEU ILE SEQRES 35 B 475 GLU LEU TRP GLU GLY LEU THR VAL ASP ASP ILE LYS LYS SEQRES 36 B 475 SER THR GLY CYS ASP PHE ALA VAL SER PRO LYS LEU ILE SEQRES 37 B 475 PRO MET GLN GLN VAL THR THR HET K A 482 1 HET K A 483 1 HET K B 482 1 HETNAM K POTASSIUM ION FORMUL 3 K 3(K 1+) FORMUL 6 HOH *782(H2 O) HELIX 1 1 ASP A 6 LYS A 12 1 7 HELIX 2 2 PRO A 31 GLY A 42 1 12 HELIX 3 3 GLY A 59 SER A 66 1 8 HELIX 4 4 ASN A 80 ALA A 89 1 10 HELIX 5 5 PRO A 98 ALA A 111 1 14 HELIX 6 6 THR A 124 GLY A 129 1 6 HELIX 7 7 ARG A 185 ARG A 189 5 5 HELIX 8 8 PHE A 191 CYS A 196 1 6 HELIX 9 9 ALA A 216 ILE A 220 5 5 HELIX 10 10 PRO A 223 VAL A 227 5 5 HELIX 11 11 ASP A 260 ALA A 271 1 12 HELIX 12 12 LEU A 272 PHE A 274 5 3 HELIX 13 13 GLY A 285 ASN A 292 1 8 HELIX 14 14 LEU A 316 VAL A 320 5 5 HELIX 15 15 SER A 342 GLY A 352 1 11 HELIX 16 16 GLY A 386 VAL A 391 1 6 HELIX 17 17 LYS A 407 ASN A 409 5 3 HELIX 18 18 THR A 455 THR A 463 1 9 HELIX 19 19 ASP B 6 LYS B 12 1 7 HELIX 20 20 PRO B 31 GLY B 42 1 12 HELIX 21 21 GLY B 59 SER B 66 1 8 HELIX 22 22 ASN B 80 ALA B 89 1 10 HELIX 23 23 PRO B 98 ALA B 111 1 14 HELIX 24 24 THR B 124 GLY B 129 1 6 HELIX 25 25 ARG B 185 ARG B 189 5 5 HELIX 26 26 PHE B 191 CYS B 196 1 6 HELIX 27 27 ALA B 216 ILE B 220 5 5 HELIX 28 28 PRO B 223 VAL B 227 5 5 HELIX 29 29 ASP B 260 ALA B 271 1 12 HELIX 30 30 LEU B 272 PHE B 274 5 3 HELIX 31 31 GLY B 285 ASN B 292 1 8 HELIX 32 32 LEU B 316 VAL B 320 5 5 HELIX 33 33 SER B 342 GLY B 352 1 11 HELIX 34 34 GLY B 386 VAL B 391 1 6 HELIX 35 35 ALA B 406 ALA B 410 5 5 HELIX 36 36 THR B 455 THR B 463 1 9 SHEET 1 A 8 LYS A 2 TYR A 4 0 SHEET 2 A 8 ARG A 229 LYS A 232 1 O LEU A 230 N TYR A 4 SHEET 3 A 8 ALA A 199 VAL A 210 1 N VAL A 204 O ARG A 229 SHEET 4 A 8 GLY A 166 ASP A 177 1 N VAL A 171 O VAL A 203 SHEET 5 A 8 THR A 19 VAL A 22 1 N LEU A 21 O LEU A 170 SHEET 6 A 8 LEU A 46 VAL A 49 1 O THR A 47 N VAL A 20 SHEET 7 A 8 ILE A 69 SER A 74 1 O ARG A 71 N ALA A 48 SHEET 8 A 8 GLU A 93 LEU A 96 1 O GLU A 93 N MET A 72 SHEET 1 B 5 LYS A 2 TYR A 4 0 SHEET 2 B 5 ARG A 229 LYS A 232 1 O LEU A 230 N TYR A 4 SHEET 3 B 5 ALA A 199 VAL A 210 1 N VAL A 204 O ARG A 229 SHEET 4 B 5 GLY A 166 ASP A 177 1 N VAL A 171 O VAL A 203 SHEET 5 B 5 VAL A 182 THR A 183 -1 O THR A 183 N LYS A 175 SHEET 1 C 3 ALA A 115 THR A 118 0 SHEET 2 C 3 GLN A 156 GLU A 162 -1 O ILE A 159 N THR A 118 SHEET 3 C 3 VAL A 150 PHE A 153 -1 N PHE A 153 O GLN A 156 SHEET 1 D 2 PRO A 132 TYR A 135 0 SHEET 2 D 2 ILE A 141 ALA A 144 -1 O ALA A 142 N LYS A 134 SHEET 1 E10 VAL A 334 TYR A 340 0 SHEET 2 E10 ILE A 308 LEU A 311 -1 N LEU A 309 O SER A 339 SHEET 3 E10 VAL A 300 SER A 304 -1 N SER A 304 O ILE A 308 SHEET 4 E10 MET A 278 LEU A 282 1 N ALA A 280 O GLN A 303 SHEET 5 E10 LEU A 357 LEU A 360 1 O MET A 359 N ASN A 281 SHEET 6 E10 LYS A 397 THR A 401 1 O LYS A 397 N THR A 358 SHEET 7 E10 ARG A 429 ILE A 431 1 O ARG A 429 N VAL A 400 SHEET 8 E10 ALA A 435 ASP A 440 -1 O PHE A 437 N ILE A 430 SHEET 9 E10 GLY A 444 LEU A 450 -1 O ILE A 448 N VAL A 436 SHEET 10 E10 ALA A 468 PRO A 475 1 O ALA A 468 N LEU A 447 SHEET 1 F 3 LEU A 371 ALA A 372 0 SHEET 2 F 3 GLN A 364 SER A 366 -1 N GLN A 364 O ALA A 372 SHEET 3 F 3 ILE A 413 MET A 414 1 O MET A 414 N VAL A 365 SHEET 1 G 2 SER A 405 ALA A 406 0 SHEET 2 G 2 ALA A 410 HIS A 411 -1 O ALA A 410 N ALA A 406 SHEET 1 H 8 LYS B 2 TYR B 4 0 SHEET 2 H 8 ARG B 229 LYS B 232 1 O LEU B 230 N TYR B 4 SHEET 3 H 8 ALA B 199 VAL B 210 1 N VAL B 204 O ARG B 229 SHEET 4 H 8 GLY B 166 ASP B 177 1 N VAL B 171 O VAL B 203 SHEET 5 H 8 THR B 19 VAL B 22 1 N LEU B 21 O LEU B 170 SHEET 6 H 8 LEU B 46 VAL B 49 1 O VAL B 49 N VAL B 20 SHEET 7 H 8 ILE B 69 SER B 74 1 O ARG B 71 N ALA B 48 SHEET 8 H 8 GLU B 93 LEU B 96 1 O GLU B 95 N MET B 72 SHEET 1 I 5 LYS B 2 TYR B 4 0 SHEET 2 I 5 ARG B 229 LYS B 232 1 O LEU B 230 N TYR B 4 SHEET 3 I 5 ALA B 199 VAL B 210 1 N VAL B 204 O ARG B 229 SHEET 4 I 5 GLY B 166 ASP B 177 1 N VAL B 171 O VAL B 203 SHEET 5 I 5 VAL B 182 THR B 183 -1 O THR B 183 N LYS B 175 SHEET 1 J 3 ALA B 115 THR B 118 0 SHEET 2 J 3 GLN B 156 GLU B 162 -1 O ILE B 159 N THR B 118 SHEET 3 J 3 VAL B 150 PHE B 153 -1 N PHE B 153 O GLN B 156 SHEET 1 K 2 PRO B 132 TYR B 135 0 SHEET 2 K 2 ILE B 141 ALA B 144 -1 O ALA B 142 N LYS B 134 SHEET 1 L10 VAL B 334 TYR B 340 0 SHEET 2 L10 ILE B 308 LEU B 311 -1 N LEU B 309 O SER B 339 SHEET 3 L10 VAL B 300 SER B 304 -1 N SER B 304 O ILE B 308 SHEET 4 L10 MET B 278 LEU B 282 1 N ALA B 280 O GLN B 303 SHEET 5 L10 LEU B 357 LEU B 360 1 O LEU B 357 N ASN B 281 SHEET 6 L10 LYS B 397 THR B 401 1 O LYS B 397 N THR B 358 SHEET 7 L10 ARG B 429 ILE B 431 1 O ILE B 431 N VAL B 400 SHEET 8 L10 ALA B 435 ASP B 440 -1 O PHE B 437 N ILE B 430 SHEET 9 L10 GLY B 444 LEU B 450 -1 O ILE B 448 N VAL B 436 SHEET 10 L10 ALA B 468 PRO B 475 1 O ALA B 468 N LEU B 447 SHEET 1 M 3 LEU B 371 ALA B 372 0 SHEET 2 M 3 GLN B 364 SER B 366 -1 N GLN B 364 O ALA B 372 SHEET 3 M 3 ILE B 413 MET B 414 1 O MET B 414 N VAL B 365 LINK O SER A 393 K K A 482 1555 1555 3.27 LINK O THR A 396 K K A 482 1555 1555 2.52 LINK O LYS A 424 K K A 483 1555 1555 2.68 LINK O GLN A 425 K K A 483 1555 1555 3.07 LINK O CYS A 426 K K A 482 1555 1555 3.33 LINK OD1 ASN A 428 K K A 482 1555 1555 2.77 LINK K K A 482 O HOH A 599 1555 1555 2.54 LINK K K A 482 O HOH A 840 1555 1555 2.77 LINK K K A 483 O HOH A 637 1555 1555 3.58 LINK K K A 483 O HOH A 680 1555 1555 2.77 LINK K K A 483 O HOH A 732 1555 1555 3.06 LINK K K A 483 O HOH A 738 1555 1555 3.21 LINK K K A 483 O HOH A 777 1555 1555 2.64 LINK O SER B 393 K K B 482 1555 1555 3.38 LINK O THR B 396 K K B 482 1555 1555 2.64 LINK O CYS B 426 K K B 482 1555 1555 3.13 LINK OD1 ASN B 428 K K B 482 1555 1555 2.70 LINK K K B 482 O HOH B 577 1555 1555 2.46 LINK K K B 482 O HOH B 666 1555 1555 2.81 SITE 1 AC1 6 SER B 393 THR B 396 CYS B 426 ASN B 428 SITE 2 AC1 6 HOH B 577 HOH B 666 SITE 1 AC2 6 SER A 393 THR A 396 CYS A 426 ASN A 428 SITE 2 AC2 6 HOH A 599 HOH A 840 SITE 1 AC3 5 LYS A 424 GLN A 425 HOH A 680 HOH A 732 SITE 2 AC3 5 HOH A 777 CRYST1 96.819 139.112 68.476 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014604 0.00000