HEADER TRANSFERASE 12-MAR-03 1OR8 TITLE STRUCTURE OF THE PREDOMINANT PROTEIN ARGININE METHYLTRANSFERASE PRMT1 CAVEAT 1OR8 CHIRALITY ERROR AT ILE 44A, 195A AND 239A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S14; COMPND 5 EC: 2.1.1.125; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUBSTRATE PEPTIDE; COMPND 9 CHAIN: B, C, D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HRMT1L2 OR PRMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS PROTEIN ARGININE METHYLATION, ADOMET-DEPENDENT METHYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN E AUTHOR X.ZHANG,X.CHENG REVDAT 5 30-OCT-24 1OR8 1 REMARK REVDAT 4 16-AUG-23 1OR8 1 REMARK REVDAT 3 13-JUL-11 1OR8 1 VERSN REVDAT 2 24-FEB-09 1OR8 1 VERSN REVDAT 1 26-AUG-03 1OR8 0 JRNL AUTH X.ZHANG,X.CHENG JRNL TITL STRUCTURE OF THE PREDOMINANT PROTEIN ARGININE JRNL TITL 2 METHYLTRANSFERASE PRMT1 AND ANALYSIS OF ITS BINDING TO JRNL TITL 3 SUBSTRATE PEPTIDES JRNL REF STRUCTURE V. 11 509 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12737817 JRNL DOI 10.1016/S0969-2126(03)00071-6 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 21747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 24.6 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1OR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.455 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1F3L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, PH 4.7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.60000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.80000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.20000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.80000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.20000 REMARK 400 REMARK 400 THE ENTRY PRESENTS A STRUCTURE OF A COMPLEX BETWEEN PROTEIN REMARK 400 ARGININE N-METHYLTRANSFERASE 1 AND SUBSTRATE PEPTIDE (19 REMARK 400 RESIDUES). THE COORDINATES PRESENTED IN THE FILE FOR PEPTIDE REMARK 400 SUBSTRATE ARE FOR FOUR POSSIBLE ALTERNATE LOCATION AS CHAINS B, REMARK 400 C, D AND E. REMARKS 465, 470 AND SHORT CONTACTS SHOULD BE VIEWED REMARK 400 IN THIS CONTEXT. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 14 REMARK 465 CYS A 15 REMARK 465 GLY A 16 REMARK 465 GLN A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 465 LYS A 23 REMARK 465 PRO A 24 REMARK 465 ASN A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 MET A 29 REMARK 465 THR A 30 REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 TYR A 34 REMARK 465 TYR A 35 REMARK 465 PHE A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 TYR A 39 REMARK 465 ALA A 40 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 GLY C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 GLY C 5 REMARK 465 GLY C 13 REMARK 465 GLY C 14 REMARK 465 GLY C 17 REMARK 465 PHE C 18 REMARK 465 GLY C 19 REMARK 465 GLY D -5 REMARK 465 GLY D -4 REMARK 465 ARG D -3 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 PHE D 0 REMARK 465 GLY D 1 REMARK 465 GLY D 4 REMARK 465 GLY D 5 REMARK 465 GLY E -5 REMARK 465 GLY E -4 REMARK 465 ARG E -3 REMARK 465 GLY E -2 REMARK 465 GLY E -1 REMARK 465 PHE E 0 REMARK 465 GLY E 1 REMARK 465 GLY E 2 REMARK 465 ARG E 3 REMARK 465 GLY E 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 41 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 44 CD1 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 ILE A 195 CD1 REMARK 470 ASP A 211 CB CG OD1 OD2 REMARK 470 VAL A 212 CB CG1 CG2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 ILE A 239 CD1 REMARK 470 ALA A 323 CB REMARK 470 LYS A 324 CB CG CD CE NZ REMARK 470 ARG A 327 CB CG CD NE CZ NH1 NH2 REMARK 470 GLY B 1 N C O REMARK 470 GLY B 2 N C O REMARK 470 ARG B 3 N C O CB CG CD NE REMARK 470 ARG B 3 CZ NH1 NH2 REMARK 470 GLY B 4 N C O REMARK 470 GLY B 5 N C O REMARK 470 PHE B 6 N C O CB CG CD1 CD2 REMARK 470 PHE B 6 CE1 CE2 CZ REMARK 470 PHE B 12 N C O CB CG CD1 CD2 REMARK 470 PHE B 12 CE1 CE2 CZ REMARK 470 GLY B 13 N C O REMARK 470 GLY B 14 N C O REMARK 470 ARG B 15 N C O CB CG CD NE REMARK 470 ARG B 15 CZ NH1 NH2 REMARK 470 GLY B 16 N C O REMARK 470 GLY B 17 N C O REMARK 470 PHE B 18 N C O CB CG CD1 CD2 REMARK 470 PHE B 18 CE1 CE2 CZ REMARK 470 GLY B 19 N C O REMARK 470 PHE C 6 N C O CB CG CD1 CD2 REMARK 470 PHE C 6 CE1 CE2 CZ REMARK 470 GLY C 7 N C O REMARK 470 GLY C 8 N C O REMARK 470 ARG C 9 N C O CB CG CD NE REMARK 470 ARG C 9 CZ NH1 NH2 REMARK 470 GLY C 10 N C O REMARK 470 GLY C 11 N C O REMARK 470 PHE C 12 N C O CB CG CD1 CD2 REMARK 470 PHE C 12 CE1 CE2 CZ REMARK 470 ARG C 15 N REMARK 470 GLY C 16 N C O REMARK 470 GLY D 2 N C O REMARK 470 ARG D 3 N REMARK 470 PHE D 6 N C O CB CG CD1 CD2 REMARK 470 PHE D 6 CE1 CE2 CZ REMARK 470 GLY D 7 N C O REMARK 470 GLY D 8 N C O REMARK 470 ARG D 9 N C O CB CG CD NE REMARK 470 ARG D 9 CZ NH1 NH2 REMARK 470 GLY D 10 N C O REMARK 470 GLY D 11 N C O REMARK 470 PHE D 12 N C O CB CG CD1 CD2 REMARK 470 PHE D 12 CE1 CE2 CZ REMARK 470 GLY D 13 N C O REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 698 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 699 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F3L RELATED DB: PDB REMARK 900 PROTEIN ARGININE METHYLTRANSFERASE PRMT3 DBREF 1OR8 A 14 353 UNP Q63009 ANM1_RAT 14 353 DBREF 1OR8 B 1 19 PDB 1OR8 1OR8 1 19 DBREF 1OR8 C 1 19 PDB 1OR8 1OR8 1 19 DBREF 1OR8 D -5 13 PDB 1OR8 1OR8 -5 13 DBREF 1OR8 E -5 13 PDB 1OR8 1OR8 -5 13 SEQRES 1 A 340 SER CYS GLY GLN ALA GLU SER SER GLU LYS PRO ASN ALA SEQRES 2 A 340 GLU ASP MET THR SER LYS ASP TYR TYR PHE ASP SER TYR SEQRES 3 A 340 ALA HIS PHE GLY ILE HIS GLU GLU MET LEU LYS ASP GLU SEQRES 4 A 340 VAL ARG THR LEU THR TYR ARG ASN SER MET PHE HIS ASN SEQRES 5 A 340 ARG HIS LEU PHE LYS ASP LYS VAL VAL LEU ASP VAL GLY SEQRES 6 A 340 SER GLY THR GLY ILE LEU CYS MET PHE ALA ALA LYS ALA SEQRES 7 A 340 GLY ALA ARG LYS VAL ILE GLY ILE GLU CYS SER SER ILE SEQRES 8 A 340 SER ASP TYR ALA VAL LYS ILE VAL LYS ALA ASN LYS LEU SEQRES 9 A 340 ASP HIS VAL VAL THR ILE ILE LYS GLY LYS VAL GLU GLU SEQRES 10 A 340 VAL GLU LEU PRO VAL GLU LYS VAL ASP ILE ILE ILE SER SEQRES 11 A 340 GLU TRP MET GLY TYR CYS LEU PHE TYR GLU SER MET LEU SEQRES 12 A 340 ASN THR VAL LEU HIS ALA ARG ASP LYS TRP LEU ALA PRO SEQRES 13 A 340 ASP GLY LEU ILE PHE PRO ASP ARG ALA THR LEU TYR VAL SEQRES 14 A 340 THR ALA ILE GLU ASP ARG GLN TYR LYS ASP TYR LYS ILE SEQRES 15 A 340 HIS TRP TRP GLU ASN VAL TYR GLY PHE ASP MET SER CYS SEQRES 16 A 340 ILE LYS ASP VAL ALA ILE LYS GLU PRO LEU VAL ASP VAL SEQRES 17 A 340 VAL ASP PRO LYS GLN LEU VAL THR ASN ALA CYS LEU ILE SEQRES 18 A 340 LYS GLU VAL ASP ILE TYR THR VAL LYS VAL GLU ASP LEU SEQRES 19 A 340 THR PHE THR SER PRO PHE CYS LEU GLN VAL LYS ARG ASN SEQRES 20 A 340 ASP TYR VAL HIS ALA LEU VAL ALA TYR PHE ASN ILE GLU SEQRES 21 A 340 PHE THR ARG CYS HIS LYS ARG THR GLY PHE SER THR SER SEQRES 22 A 340 PRO GLU SER PRO TYR THR HIS TRP LYS GLN THR VAL PHE SEQRES 23 A 340 TYR MET GLU ASP TYR LEU THR VAL LYS THR GLY GLU GLU SEQRES 24 A 340 ILE PHE GLY THR ILE GLY MET ARG PRO ASN ALA LYS ASN SEQRES 25 A 340 ASN ARG ASP LEU ASP PHE THR ILE ASP LEU ASP PHE LYS SEQRES 26 A 340 GLY GLN LEU CYS GLU LEU SER CYS SER THR ASP TYR ARG SEQRES 27 A 340 MET ARG SEQRES 1 B 19 GLY GLY ARG GLY GLY PHE GLY GLY ARG GLY GLY PHE GLY SEQRES 2 B 19 GLY ARG GLY GLY PHE GLY SEQRES 1 C 19 GLY GLY ARG GLY GLY PHE GLY GLY ARG GLY GLY PHE GLY SEQRES 2 C 19 GLY ARG GLY GLY PHE GLY SEQRES 1 D 19 GLY GLY ARG GLY GLY PHE GLY GLY ARG GLY GLY PHE GLY SEQRES 2 D 19 GLY ARG GLY GLY PHE GLY SEQRES 1 E 19 GLY GLY ARG GLY GLY PHE GLY GLY ARG GLY GLY PHE GLY SEQRES 2 E 19 GLY ARG GLY GLY PHE GLY HET SAH A 354 26 HET UNL A 582 5 HET GOL A 698 6 HET GOL A 699 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *170(H2 O) HELIX 1 1 PHE A 42 ASP A 51 1 10 HELIX 2 2 ASP A 51 HIS A 64 1 14 HELIX 3 3 ASN A 65 LYS A 70 1 6 HELIX 4 4 GLY A 82 ALA A 91 1 10 HELIX 5 5 SER A 103 ASN A 115 1 13 HELIX 6 6 MET A 155 TRP A 166 1 12 HELIX 7 7 ASP A 187 ILE A 195 1 9 HELIX 8 8 HIS A 196 ASN A 200 5 5 HELIX 9 9 SER A 207 LYS A 215 1 9 HELIX 10 10 ASP A 223 LYS A 225 5 3 HELIX 11 11 LYS A 243 THR A 248 5 6 SHEET 1 A 5 VAL A 121 LYS A 125 0 SHEET 2 A 5 LYS A 95 GLU A 100 1 N GLY A 98 O ILE A 124 SHEET 3 A 5 VAL A 73 VAL A 77 1 N ASP A 76 O ILE A 97 SHEET 4 A 5 VAL A 138 SER A 143 1 O ILE A 142 N LEU A 75 SHEET 5 A 5 LEU A 167 PHE A 174 1 O PHE A 174 N ILE A 141 SHEET 1 B 5 LEU A 218 ASP A 220 0 SHEET 2 B 5 GLN A 296 VAL A 307 -1 O VAL A 298 N LEU A 218 SHEET 3 B 5 ASP A 261 GLU A 273 -1 N LEU A 266 O PHE A 299 SHEET 4 B 5 ARG A 177 ILE A 185 -1 N THR A 183 O VAL A 267 SHEET 5 B 5 LEU A 227 ASP A 238 -1 O VAL A 237 N ALA A 178 SHEET 1 C 4 LEU A 218 ASP A 220 0 SHEET 2 C 4 GLN A 296 VAL A 307 -1 O VAL A 298 N LEU A 218 SHEET 3 C 4 ASP A 261 GLU A 273 -1 N LEU A 266 O PHE A 299 SHEET 4 C 4 GLY A 282 SER A 284 -1 O PHE A 283 N ILE A 272 SHEET 1 D 4 PHE A 249 GLN A 256 0 SHEET 2 D 4 GLU A 312 PRO A 321 -1 O MET A 319 N PHE A 249 SHEET 3 D 4 LEU A 329 LYS A 338 -1 O ASP A 336 N PHE A 314 SHEET 4 D 4 GLU A 343 MET A 352 -1 O MET A 352 N LEU A 329 SSBOND 1 CYS A 254 CYS A 254 1555 5555 2.77 CISPEP 1 PHE A 174 PRO A 175 0 0.11 SITE 1 AC1 21 HIS A 45 ARG A 54 GLY A 78 SER A 79 SITE 2 AC1 21 GLY A 80 ILE A 83 LEU A 84 GLU A 100 SITE 3 AC1 21 CYS A 101 GLY A 126 LYS A 127 VAL A 128 SITE 4 AC1 21 GLU A 129 GLU A 144 MET A 155 HOH A 355 SITE 5 AC1 21 HOH A 371 HOH A 372 ARG B 9 ARG C 15 SITE 6 AC1 21 ARG D 3 SITE 1 AC2 7 ASP A 187 TYR A 190 VAL A 221 VAL A 222 SITE 2 AC2 7 ASP A 223 GLN A 226 TYR A 300 SITE 1 AC3 6 LYS A 50 TRP A 197 ASN A 200 VAL A 201 SITE 2 AC3 6 TYR A 202 HOH A 573 SITE 1 AC4 6 GLU A 311 GLU A 312 ASP A 334 LYS A 338 SITE 2 AC4 6 HOH A 403 HOH A 451 CRYST1 86.500 86.500 142.400 90.00 90.00 90.00 P 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007022 0.00000