HEADER TRANSPORT PROTEIN 13-MAR-03 1ORG TITLE THE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM THE TITLE 2 COCKROACH LEUCOPHAEA MADERAE REVEALS A NEW MECHANISM OF PHEROMONE TITLE 3 BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCOPHAEA MADERAE; SOURCE 3 ORGANISM_COMMON: MADEIRA COCKROACH; SOURCE 4 ORGANISM_TAXID: 6988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS PHEROMONE BINDING PROTEIN, APO-FORM, 6 ALPHA HELIX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LARTIGUE,A.GRUEZ,S.SPINELLI,S.RIVIERE,R.BROSSUT,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 4 13-JUL-11 1ORG 1 VERSN REVDAT 3 24-FEB-09 1ORG 1 VERSN REVDAT 2 19-AUG-03 1ORG 1 JRNL REVDAT 1 05-AUG-03 1ORG 0 JRNL AUTH A.LARTIGUE,A.GRUEZ,S.SPINELLI,S.RIVIERE,R.BROSSUT,M.TEGONI, JRNL AUTH 2 C.CAMBILLAU JRNL TITL THE CRYSTAL STRUCTURE OF A COCKROACH PHEROMONE-BINDING JRNL TITL 2 PROTEIN SUGGESTS A NEW LIGAND BINDING AND RELEASE MECHANISM JRNL REF J.BIOL.CHEM. V. 278 30213 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12766173 JRNL DOI 10.1074/JBC.M304688200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 26680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.56000 REMARK 3 B13 (A**2) : -1.57000 REMARK 3 B23 (A**2) : 0.12000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1842 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2491 ; 1.427 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 4.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1392 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 935 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1890 ; 1.277 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 667 ; 2.337 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 601 ; 3.549 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3780 10.8440 -10.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0495 REMARK 3 T33: 0.0314 T12: -0.0099 REMARK 3 T13: 0.0114 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.9265 L22: 1.7265 REMARK 3 L33: 1.6125 L12: 0.1185 REMARK 3 L13: 0.2724 L23: -0.2890 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.0689 S13: -0.0853 REMARK 3 S21: 0.1156 S22: -0.0644 S23: -0.1053 REMARK 3 S31: 0.0541 S32: -0.0275 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6900 -10.6680 8.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.0174 T22: 0.0540 REMARK 3 T33: 0.0363 T12: 0.0133 REMARK 3 T13: 0.0230 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.6376 L22: 2.2792 REMARK 3 L33: 1.7519 L12: 0.3887 REMARK 3 L13: 0.5175 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.1005 S13: 0.0573 REMARK 3 S21: -0.0613 S22: 0.0483 S23: 0.0388 REMARK 3 S31: 0.0399 S32: 0.0350 S33: -0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ORG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97887 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG 2000, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 LYS B 81 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 37 CD OE1 OE2 REMARK 480 LYS A 81 CB CG CD CE NZ REMARK 480 LYS B 28 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 273 O HOH B 326 2.12 REMARK 500 NH2 ARG A 39 OD1 ASP A 102 2.12 REMARK 500 CD1 ILE A 55 O HOH A 264 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 37 CG GLU A 37 CD 0.108 REMARK 500 PHE A 80 C LYS A 81 N 0.196 REMARK 500 LYS A 81 C THR A 82 N 0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LYS A 81 C - N - CA ANGL. DEV. = -26.8 DEGREES REMARK 500 LYS A 81 O - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP B 26 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 81 -21.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 321 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 310 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B 313 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 325 DISTANCE = 7.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OW4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM THE REMARK 900 COCKROACH LEUCOPHAEA MADERAE IN COMPLEX WITH THE REMARK 900 FLUORESCENT REPORTER ANS (1-ANILINONAPHTALENE-8-SULFONIC REMARK 900 ACID) REMARK 900 RELATED ID: 1P28 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM REMARK 900 THE COCKROACH LEUCOPHAEA MADERAE IN COMPLEX WITH A REMARK 900 COMPONENT OF THE PHEROMONAL BLEND: 3-HYDROXY-BUTAN-2-ONE DBREF 1ORG A 1 118 UNP Q8MTC1 Q8MTC1_LEUMA 20 137 DBREF 1ORG B 1 118 UNP Q8MTC1 Q8MTC1_LEUMA 20 137 SEQRES 1 A 118 SER THR GLN SER TYR LYS ASP ALA MET GLY PRO LEU VAL SEQRES 2 A 118 ARG GLU CYS MET GLY SER VAL SER ALA THR GLU ASP ASP SEQRES 3 A 118 PHE LYS THR VAL LEU ASN ARG ASN PRO LEU GLU SER ARG SEQRES 4 A 118 THR ALA GLN CYS LEU LEU ALA CYS ALA LEU ASP LYS VAL SEQRES 5 A 118 GLY LEU ILE SER PRO GLU GLY ALA ILE TYR THR GLY ASP SEQRES 6 A 118 ASP LEU MET PRO VAL MET ASN ARG LEU TYR GLY PHE ASN SEQRES 7 A 118 ASP PHE LYS THR VAL MET LYS ALA LYS ALA VAL ASN ASP SEQRES 8 A 118 CYS ALA ASN GLN VAL ASN GLY ALA TYR PRO ASP ARG CYS SEQRES 9 A 118 ASP LEU ILE LYS ASN PHE THR ASP CYS VAL ARG ASN SER SEQRES 10 A 118 TYR SEQRES 1 B 118 SER THR GLN SER TYR LYS ASP ALA MET GLY PRO LEU VAL SEQRES 2 B 118 ARG GLU CYS MET GLY SER VAL SER ALA THR GLU ASP ASP SEQRES 3 B 118 PHE LYS THR VAL LEU ASN ARG ASN PRO LEU GLU SER ARG SEQRES 4 B 118 THR ALA GLN CYS LEU LEU ALA CYS ALA LEU ASP LYS VAL SEQRES 5 B 118 GLY LEU ILE SER PRO GLU GLY ALA ILE TYR THR GLY ASP SEQRES 6 B 118 ASP LEU MET PRO VAL MET ASN ARG LEU TYR GLY PHE ASN SEQRES 7 B 118 ASP PHE LYS THR VAL MET LYS ALA LYS ALA VAL ASN ASP SEQRES 8 B 118 CYS ALA ASN GLN VAL ASN GLY ALA TYR PRO ASP ARG CYS SEQRES 9 B 118 ASP LEU ILE LYS ASN PHE THR ASP CYS VAL ARG ASN SER SEQRES 10 B 118 TYR HET GOL B 250 6 HET GOL A 251 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *187(H2 O) HELIX 1 2 THR A 23 ASN A 32 1 10 HELIX 2 3 SER A 38 GLY A 53 1 16 HELIX 3 4 THR A 63 ASP A 66 5 4 HELIX 4 5 LEU A 67 GLY A 76 1 10 HELIX 5 6 ASP A 79 ASN A 97 1 19 HELIX 6 7 ASP A 102 SER A 117 1 16 HELIX 7 8 SER B 1 MET B 17 1 17 HELIX 8 9 GLY B 18 SER B 21 5 4 HELIX 9 10 THR B 23 ASN B 32 1 10 HELIX 10 11 SER B 38 GLY B 53 1 16 HELIX 11 12 THR B 63 ASP B 66 5 4 HELIX 12 13 LEU B 67 TYR B 75 1 9 HELIX 13 14 PHE B 80 ASN B 97 1 18 HELIX 14 15 ASP B 102 SER B 117 1 16 SSBOND 1 CYS A 16 CYS A 47 1555 1555 2.09 SSBOND 2 CYS A 43 CYS A 104 1555 1555 2.09 SSBOND 3 CYS A 92 CYS A 113 1555 1555 2.05 SSBOND 4 CYS B 16 CYS B 47 1555 1555 2.08 SSBOND 5 CYS B 43 CYS B 104 1555 1555 2.07 SSBOND 6 CYS B 92 CYS B 113 1555 1555 2.10 SITE 1 AC1 3 TYR B 5 TYR B 75 LYS B 85 SITE 1 AC2 3 TYR A 5 TYR A 75 HOH A 349 CRYST1 43.303 44.930 45.562 118.13 93.18 107.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023093 0.007127 0.005735 0.00000 SCALE2 0.000000 0.023293 0.013859 0.00000 SCALE3 0.000000 0.000000 0.025579 0.00000