data_1ORP # _entry.id 1ORP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ORP pdb_00001orp 10.2210/pdb1orp/pdb NDB PD0397 ? ? RCSB RCSB018600 ? ? WWPDB D_1000018600 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.conn_type_id' 24 4 'Structure model' '_struct_conn.id' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_conn_type.id' 42 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ORP _pdbx_database_status.recvd_initial_deposition_date 2003-03-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ABK 'Structure of E. coli endonuclease III without DNA' unspecified PDB 1ORN 'Structure of a Trapped Endonuclease III - DNA Covalent Intermediate: Estranged-Guanine Complex' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fromme, J.C.' 1 'Verdine, G.L.' 2 # _citation.id primary _citation.title 'Structure of a Trapped Endonuclease III-DNA Covalent Intermediate' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 22 _citation.page_first 3461 _citation.page_last 3471 _citation.year 2003 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12840008 _citation.pdbx_database_id_DOI 10.1093/emboj/cdg311 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fromme, J.C.' 1 ? primary 'Verdine, G.L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*AP*GP*AP*CP*AP*TP*GP*GP*AP*C)-3'" 3391.250 1 ? ? ? ? 2 polymer syn "5'-D(*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3'" 3193.089 1 ? ? ? ? 3 polymer man 'Endonuclease III' 26234.816 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 6 water nat water 18.015 71 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DA)(DC)(DA)(DT)(DG)(DG)(DA)(DC)' AAGACATGGAC B ? 2 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(DC)(DC)(DA)(PED)(DG)(DT)(DC)(DT)' TGTCCAXGTCT C ? 3 'polypeptide(L)' no no ;GSHMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDI RSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDS VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK ; ;GSHMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDI RSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDS VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 'IRON/SULFUR CLUSTER' SF4 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DC n 2 1 DT n 2 2 DG n 2 3 DT n 2 4 DC n 2 5 DC n 2 6 DA n 2 7 PED n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DT n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 LEU n 3 6 THR n 3 7 LYS n 3 8 GLN n 3 9 GLN n 3 10 ILE n 3 11 ARG n 3 12 TYR n 3 13 CYS n 3 14 LEU n 3 15 ASP n 3 16 GLU n 3 17 MET n 3 18 ALA n 3 19 LYS n 3 20 MET n 3 21 PHE n 3 22 PRO n 3 23 ASP n 3 24 ALA n 3 25 HIS n 3 26 CYS n 3 27 GLU n 3 28 LEU n 3 29 VAL n 3 30 HIS n 3 31 ARG n 3 32 ASN n 3 33 PRO n 3 34 PHE n 3 35 GLU n 3 36 LEU n 3 37 LEU n 3 38 ILE n 3 39 ALA n 3 40 VAL n 3 41 VAL n 3 42 LEU n 3 43 SER n 3 44 ALA n 3 45 GLN n 3 46 CYS n 3 47 THR n 3 48 ASP n 3 49 ALA n 3 50 LEU n 3 51 VAL n 3 52 ASN n 3 53 LYS n 3 54 VAL n 3 55 THR n 3 56 LYS n 3 57 ARG n 3 58 LEU n 3 59 PHE n 3 60 GLU n 3 61 LYS n 3 62 TYR n 3 63 ARG n 3 64 THR n 3 65 PRO n 3 66 HIS n 3 67 ASP n 3 68 TYR n 3 69 ILE n 3 70 ALA n 3 71 VAL n 3 72 PRO n 3 73 LEU n 3 74 GLU n 3 75 GLU n 3 76 LEU n 3 77 GLU n 3 78 GLN n 3 79 ASP n 3 80 ILE n 3 81 ARG n 3 82 SER n 3 83 ILE n 3 84 GLY n 3 85 LEU n 3 86 TYR n 3 87 ARG n 3 88 ASN n 3 89 LYS n 3 90 ALA n 3 91 ARG n 3 92 ASN n 3 93 ILE n 3 94 GLN n 3 95 LYS n 3 96 LEU n 3 97 CYS n 3 98 ALA n 3 99 MET n 3 100 LEU n 3 101 ILE n 3 102 ASP n 3 103 LYS n 3 104 TYR n 3 105 ASN n 3 106 GLY n 3 107 GLU n 3 108 VAL n 3 109 PRO n 3 110 ARG n 3 111 ASP n 3 112 ARG n 3 113 ASP n 3 114 GLU n 3 115 LEU n 3 116 MET n 3 117 LYS n 3 118 LEU n 3 119 PRO n 3 120 GLY n 3 121 VAL n 3 122 GLY n 3 123 ARG n 3 124 LYS n 3 125 THR n 3 126 ALA n 3 127 ASN n 3 128 VAL n 3 129 VAL n 3 130 VAL n 3 131 SER n 3 132 VAL n 3 133 ALA n 3 134 PHE n 3 135 GLY n 3 136 VAL n 3 137 PRO n 3 138 ALA n 3 139 ILE n 3 140 ALA n 3 141 VAL n 3 142 ASP n 3 143 THR n 3 144 HIS n 3 145 VAL n 3 146 GLU n 3 147 ARG n 3 148 VAL n 3 149 SER n 3 150 LYS n 3 151 ARG n 3 152 LEU n 3 153 GLY n 3 154 PHE n 3 155 CYS n 3 156 ARG n 3 157 TRP n 3 158 ASP n 3 159 ASP n 3 160 SER n 3 161 VAL n 3 162 LEU n 3 163 GLU n 3 164 VAL n 3 165 GLU n 3 166 LYS n 3 167 THR n 3 168 LEU n 3 169 MET n 3 170 LYS n 3 171 ILE n 3 172 ILE n 3 173 PRO n 3 174 LYS n 3 175 GLU n 3 176 GLU n 3 177 TRP n 3 178 SER n 3 179 ILE n 3 180 THR n 3 181 HIS n 3 182 HIS n 3 183 ARG n 3 184 MET n 3 185 ILE n 3 186 PHE n 3 187 PHE n 3 188 GLY n 3 189 ARG n 3 190 TYR n 3 191 HIS n 3 192 CYS n 3 193 LYS n 3 194 ALA n 3 195 GLN n 3 196 SER n 3 197 PRO n 3 198 GLN n 3 199 CYS n 3 200 PRO n 3 201 SER n 3 202 CYS n 3 203 PRO n 3 204 LEU n 3 205 LEU n 3 206 HIS n 3 207 LEU n 3 208 CYS n 3 209 ARG n 3 210 GLU n 3 211 GLY n 3 212 LYS n 3 213 LYS n 3 214 ARG n 3 215 MET n 3 216 ARG n 3 217 LYS n 3 218 ARG n 3 219 GLU n 3 220 GLU n 3 221 LYS n 3 222 ALA n 3 223 ALA n 3 224 ASN n 3 225 GLN n 3 226 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacillus _entity_src_gen.pdbx_gene_src_gene nth _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(C41)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PED non-polymer . PENTANE-3,4-DIOL-5-PHOSPHATE ;OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ; 'C5 H13 O6 P' 200.127 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A B . n A 1 2 DA 2 2 2 DA A B . n A 1 3 DG 3 3 3 DG G B . n A 1 4 DA 4 4 4 DA A B . n A 1 5 DC 5 5 5 DC C B . n A 1 6 DA 6 6 6 DA A B . n A 1 7 DT 7 7 7 DT T B . n A 1 8 DG 8 8 8 DG G B . n A 1 9 DG 9 9 9 DG G B . n A 1 10 DA 10 10 10 DA A B . n A 1 11 DC 11 11 11 DC C B . n B 2 1 DT 1 12 ? ? ? C . n B 2 2 DG 2 13 13 DG G C . n B 2 3 DT 3 14 14 DT T C . n B 2 4 DC 4 15 15 DC C C . n B 2 5 DC 5 16 16 DC C C . n B 2 6 DA 6 17 17 DA A C . n B 2 7 PED 7 18 18 PED PED C . n B 2 8 DG 8 19 19 DG G C . n B 2 9 DT 9 20 20 DT T C . n B 2 10 DC 10 21 21 DC C C . n B 2 11 DT 11 22 22 DT T C . n C 3 1 GLY 1 -2 ? ? ? A . n C 3 2 SER 2 -1 ? ? ? A . n C 3 3 HIS 3 0 ? ? ? A . n C 3 4 MET 4 1 1 MET MET A . n C 3 5 LEU 5 2 2 LEU LEU A . n C 3 6 THR 6 3 3 THR THR A . n C 3 7 LYS 7 4 4 LYS LYS A . n C 3 8 GLN 8 5 5 GLN GLN A . n C 3 9 GLN 9 6 6 GLN GLN A . n C 3 10 ILE 10 7 7 ILE ILE A . n C 3 11 ARG 11 8 8 ARG ARG A . n C 3 12 TYR 12 9 9 TYR TYR A . n C 3 13 CYS 13 10 10 CYS CYS A . n C 3 14 LEU 14 11 11 LEU LEU A . n C 3 15 ASP 15 12 12 ASP ASP A . n C 3 16 GLU 16 13 13 GLU GLU A . n C 3 17 MET 17 14 14 MET MET A . n C 3 18 ALA 18 15 15 ALA ALA A . n C 3 19 LYS 19 16 16 LYS LYS A . n C 3 20 MET 20 17 17 MET MET A . n C 3 21 PHE 21 18 18 PHE PHE A . n C 3 22 PRO 22 19 19 PRO PRO A . n C 3 23 ASP 23 20 20 ASP ASP A . n C 3 24 ALA 24 21 21 ALA ALA A . n C 3 25 HIS 25 22 22 HIS HIS A . n C 3 26 CYS 26 23 23 CYS CYS A . n C 3 27 GLU 27 24 24 GLU GLU A . n C 3 28 LEU 28 25 25 LEU LEU A . n C 3 29 VAL 29 26 26 VAL VAL A . n C 3 30 HIS 30 27 27 HIS HIS A . n C 3 31 ARG 31 28 28 ARG ARG A . n C 3 32 ASN 32 29 29 ASN ASN A . n C 3 33 PRO 33 30 30 PRO PRO A . n C 3 34 PHE 34 31 31 PHE PHE A . n C 3 35 GLU 35 32 32 GLU GLU A . n C 3 36 LEU 36 33 33 LEU LEU A . n C 3 37 LEU 37 34 34 LEU LEU A . n C 3 38 ILE 38 35 35 ILE ILE A . n C 3 39 ALA 39 36 36 ALA ALA A . n C 3 40 VAL 40 37 37 VAL VAL A . n C 3 41 VAL 41 38 38 VAL VAL A . n C 3 42 LEU 42 39 39 LEU LEU A . n C 3 43 SER 43 40 40 SER SER A . n C 3 44 ALA 44 41 41 ALA ALA A . n C 3 45 GLN 45 42 42 GLN GLN A . n C 3 46 CYS 46 43 43 CYS CYS A . n C 3 47 THR 47 44 44 THR THR A . n C 3 48 ASP 48 45 45 ASP ASP A . n C 3 49 ALA 49 46 46 ALA ALA A . n C 3 50 LEU 50 47 47 LEU LEU A . n C 3 51 VAL 51 48 48 VAL VAL A . n C 3 52 ASN 52 49 49 ASN ASN A . n C 3 53 LYS 53 50 50 LYS LYS A . n C 3 54 VAL 54 51 51 VAL VAL A . n C 3 55 THR 55 52 52 THR THR A . n C 3 56 LYS 56 53 53 LYS LYS A . n C 3 57 ARG 57 54 54 ARG ARG A . n C 3 58 LEU 58 55 55 LEU LEU A . n C 3 59 PHE 59 56 56 PHE PHE A . n C 3 60 GLU 60 57 57 GLU GLU A . n C 3 61 LYS 61 58 58 LYS LYS A . n C 3 62 TYR 62 59 59 TYR TYR A . n C 3 63 ARG 63 60 60 ARG ARG A . n C 3 64 THR 64 61 61 THR THR A . n C 3 65 PRO 65 62 62 PRO PRO A . n C 3 66 HIS 66 63 63 HIS HIS A . n C 3 67 ASP 67 64 64 ASP ASP A . n C 3 68 TYR 68 65 65 TYR TYR A . n C 3 69 ILE 69 66 66 ILE ILE A . n C 3 70 ALA 70 67 67 ALA ALA A . n C 3 71 VAL 71 68 68 VAL VAL A . n C 3 72 PRO 72 69 69 PRO PRO A . n C 3 73 LEU 73 70 70 LEU LEU A . n C 3 74 GLU 74 71 71 GLU GLU A . n C 3 75 GLU 75 72 72 GLU GLU A . n C 3 76 LEU 76 73 73 LEU LEU A . n C 3 77 GLU 77 74 74 GLU GLU A . n C 3 78 GLN 78 75 75 GLN GLN A . n C 3 79 ASP 79 76 76 ASP ASP A . n C 3 80 ILE 80 77 77 ILE ILE A . n C 3 81 ARG 81 78 78 ARG ARG A . n C 3 82 SER 82 79 79 SER SER A . n C 3 83 ILE 83 80 80 ILE ILE A . n C 3 84 GLY 84 81 81 GLY GLY A . n C 3 85 LEU 85 82 82 LEU LEU A . n C 3 86 TYR 86 83 83 TYR TYR A . n C 3 87 ARG 87 84 84 ARG ARG A . n C 3 88 ASN 88 85 85 ASN ASN A . n C 3 89 LYS 89 86 86 LYS LYS A . n C 3 90 ALA 90 87 87 ALA ALA A . n C 3 91 ARG 91 88 88 ARG ARG A . n C 3 92 ASN 92 89 89 ASN ASN A . n C 3 93 ILE 93 90 90 ILE ILE A . n C 3 94 GLN 94 91 91 GLN GLN A . n C 3 95 LYS 95 92 92 LYS LYS A . n C 3 96 LEU 96 93 93 LEU LEU A . n C 3 97 CYS 97 94 94 CYS CYS A . n C 3 98 ALA 98 95 95 ALA ALA A . n C 3 99 MET 99 96 96 MET MET A . n C 3 100 LEU 100 97 97 LEU LEU A . n C 3 101 ILE 101 98 98 ILE ILE A . n C 3 102 ASP 102 99 99 ASP ASP A . n C 3 103 LYS 103 100 100 LYS LYS A . n C 3 104 TYR 104 101 101 TYR TYR A . n C 3 105 ASN 105 102 102 ASN ASN A . n C 3 106 GLY 106 103 103 GLY GLY A . n C 3 107 GLU 107 104 104 GLU GLU A . n C 3 108 VAL 108 105 105 VAL VAL A . n C 3 109 PRO 109 106 106 PRO PRO A . n C 3 110 ARG 110 107 107 ARG ARG A . n C 3 111 ASP 111 108 108 ASP ASP A . n C 3 112 ARG 112 109 109 ARG ARG A . n C 3 113 ASP 113 110 110 ASP ASP A . n C 3 114 GLU 114 111 111 GLU GLU A . n C 3 115 LEU 115 112 112 LEU LEU A . n C 3 116 MET 116 113 113 MET MET A . n C 3 117 LYS 117 114 114 LYS LYS A . n C 3 118 LEU 118 115 115 LEU LEU A . n C 3 119 PRO 119 116 116 PRO PRO A . n C 3 120 GLY 120 117 117 GLY GLY A . n C 3 121 VAL 121 118 118 VAL VAL A . n C 3 122 GLY 122 119 119 GLY GLY A . n C 3 123 ARG 123 120 120 ARG ARG A . n C 3 124 LYS 124 121 121 LYS LYS A . n C 3 125 THR 125 122 122 THR THR A . n C 3 126 ALA 126 123 123 ALA ALA A . n C 3 127 ASN 127 124 124 ASN ASN A . n C 3 128 VAL 128 125 125 VAL VAL A . n C 3 129 VAL 129 126 126 VAL VAL A . n C 3 130 VAL 130 127 127 VAL VAL A . n C 3 131 SER 131 128 128 SER SER A . n C 3 132 VAL 132 129 129 VAL VAL A . n C 3 133 ALA 133 130 130 ALA ALA A . n C 3 134 PHE 134 131 131 PHE PHE A . n C 3 135 GLY 135 132 132 GLY GLY A . n C 3 136 VAL 136 133 133 VAL VAL A . n C 3 137 PRO 137 134 134 PRO PRO A . n C 3 138 ALA 138 135 135 ALA ALA A . n C 3 139 ILE 139 136 136 ILE ILE A . n C 3 140 ALA 140 137 137 ALA ALA A . n C 3 141 VAL 141 138 138 VAL VAL A . n C 3 142 ASP 142 139 139 ASP ASP A . n C 3 143 THR 143 140 140 THR THR A . n C 3 144 HIS 144 141 141 HIS HIS A . n C 3 145 VAL 145 142 142 VAL VAL A . n C 3 146 GLU 146 143 143 GLU GLU A . n C 3 147 ARG 147 144 144 ARG ARG A . n C 3 148 VAL 148 145 145 VAL VAL A . n C 3 149 SER 149 146 146 SER SER A . n C 3 150 LYS 150 147 147 LYS LYS A . n C 3 151 ARG 151 148 148 ARG ARG A . n C 3 152 LEU 152 149 149 LEU LEU A . n C 3 153 GLY 153 150 150 GLY GLY A . n C 3 154 PHE 154 151 151 PHE PHE A . n C 3 155 CYS 155 152 152 CYS CYS A . n C 3 156 ARG 156 153 153 ARG ARG A . n C 3 157 TRP 157 154 154 TRP TRP A . n C 3 158 ASP 158 155 155 ASP ASP A . n C 3 159 ASP 159 156 156 ASP ASP A . n C 3 160 SER 160 157 157 SER SER A . n C 3 161 VAL 161 158 158 VAL VAL A . n C 3 162 LEU 162 159 159 LEU LEU A . n C 3 163 GLU 163 160 160 GLU GLU A . n C 3 164 VAL 164 161 161 VAL VAL A . n C 3 165 GLU 165 162 162 GLU GLU A . n C 3 166 LYS 166 163 163 LYS LYS A . n C 3 167 THR 167 164 164 THR THR A . n C 3 168 LEU 168 165 165 LEU LEU A . n C 3 169 MET 169 166 166 MET MET A . n C 3 170 LYS 170 167 167 LYS LYS A . n C 3 171 ILE 171 168 168 ILE ILE A . n C 3 172 ILE 172 169 169 ILE ILE A . n C 3 173 PRO 173 170 170 PRO PRO A . n C 3 174 LYS 174 171 171 LYS LYS A . n C 3 175 GLU 175 172 172 GLU GLU A . n C 3 176 GLU 176 173 173 GLU GLU A . n C 3 177 TRP 177 174 174 TRP TRP A . n C 3 178 SER 178 175 175 SER SER A . n C 3 179 ILE 179 176 176 ILE ILE A . n C 3 180 THR 180 177 177 THR THR A . n C 3 181 HIS 181 178 178 HIS HIS A . n C 3 182 HIS 182 179 179 HIS HIS A . n C 3 183 ARG 183 180 180 ARG ARG A . n C 3 184 MET 184 181 181 MET MET A . n C 3 185 ILE 185 182 182 ILE ILE A . n C 3 186 PHE 186 183 183 PHE PHE A . n C 3 187 PHE 187 184 184 PHE PHE A . n C 3 188 GLY 188 185 185 GLY GLY A . n C 3 189 ARG 189 186 186 ARG ARG A . n C 3 190 TYR 190 187 187 TYR TYR A . n C 3 191 HIS 191 188 188 HIS HIS A . n C 3 192 CYS 192 189 189 CYS CYS A . n C 3 193 LYS 193 190 190 LYS LYS A . n C 3 194 ALA 194 191 191 ALA ALA A . n C 3 195 GLN 195 192 192 GLN GLN A . n C 3 196 SER 196 193 193 SER SER A . n C 3 197 PRO 197 194 194 PRO PRO A . n C 3 198 GLN 198 195 195 GLN GLN A . n C 3 199 CYS 199 196 196 CYS CYS A . n C 3 200 PRO 200 197 197 PRO PRO A . n C 3 201 SER 201 198 198 SER SER A . n C 3 202 CYS 202 199 199 CYS CYS A . n C 3 203 PRO 203 200 200 PRO PRO A . n C 3 204 LEU 204 201 201 LEU LEU A . n C 3 205 LEU 205 202 202 LEU LEU A . n C 3 206 HIS 206 203 203 HIS HIS A . n C 3 207 LEU 207 204 204 LEU LEU A . n C 3 208 CYS 208 205 205 CYS CYS A . n C 3 209 ARG 209 206 206 ARG ARG A . n C 3 210 GLU 210 207 207 GLU GLU A . n C 3 211 GLY 211 208 208 GLY GLY A . n C 3 212 LYS 212 209 209 LYS LYS A . n C 3 213 LYS 213 210 210 LYS LYS A . n C 3 214 ARG 214 211 211 ARG ARG A . n C 3 215 MET 215 212 212 MET MET A . n C 3 216 ARG 216 213 213 ARG ARG A . n C 3 217 LYS 217 214 ? ? ? A . n C 3 218 ARG 218 215 ? ? ? A . n C 3 219 GLU 219 216 ? ? ? A . n C 3 220 GLU 220 217 ? ? ? A . n C 3 221 LYS 221 218 ? ? ? A . n C 3 222 ALA 222 219 ? ? ? A . n C 3 223 ALA 223 220 ? ? ? A . n C 3 224 ASN 224 221 ? ? ? A . n C 3 225 GLN 225 222 ? ? ? A . n C 3 226 LYS 226 223 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 224 201 NA NA A . E 5 SF4 1 300 300 SF4 FS4 A . F 6 HOH 1 54 54 HOH HOH B . F 6 HOH 2 62 62 HOH HOH B . F 6 HOH 3 75 75 HOH HOH B . F 6 HOH 4 80 80 HOH HOH B . G 6 HOH 1 23 7 HOH HOH C . G 6 HOH 2 24 11 HOH HOH C . G 6 HOH 3 25 20 HOH HOH C . G 6 HOH 4 26 23 HOH HOH C . G 6 HOH 5 27 27 HOH HOH C . G 6 HOH 6 28 28 HOH HOH C . G 6 HOH 7 29 32 HOH HOH C . G 6 HOH 8 30 59 HOH HOH C . G 6 HOH 9 31 65 HOH HOH C . G 6 HOH 10 32 71 HOH HOH C . G 6 HOH 11 33 73 HOH HOH C . G 6 HOH 12 34 74 HOH HOH C . G 6 HOH 13 35 79 HOH HOH C . H 6 HOH 1 301 1 HOH HOH A . H 6 HOH 2 302 2 HOH HOH A . H 6 HOH 3 303 3 HOH HOH A . H 6 HOH 4 304 4 HOH HOH A . H 6 HOH 5 305 5 HOH HOH A . H 6 HOH 6 306 6 HOH HOH A . H 6 HOH 7 307 8 HOH HOH A . H 6 HOH 8 308 9 HOH HOH A . H 6 HOH 9 309 10 HOH HOH A . H 6 HOH 10 310 12 HOH HOH A . H 6 HOH 11 311 13 HOH HOH A . H 6 HOH 12 312 14 HOH HOH A . H 6 HOH 13 313 15 HOH HOH A . H 6 HOH 14 314 16 HOH HOH A . H 6 HOH 15 315 17 HOH HOH A . H 6 HOH 16 316 18 HOH HOH A . H 6 HOH 17 317 19 HOH HOH A . H 6 HOH 18 318 22 HOH HOH A . H 6 HOH 19 319 24 HOH HOH A . H 6 HOH 20 320 25 HOH HOH A . H 6 HOH 21 321 26 HOH HOH A . H 6 HOH 22 322 29 HOH HOH A . H 6 HOH 23 323 31 HOH HOH A . H 6 HOH 24 324 33 HOH HOH A . H 6 HOH 25 325 34 HOH HOH A . H 6 HOH 26 326 35 HOH HOH A . H 6 HOH 27 327 36 HOH HOH A . H 6 HOH 28 328 39 HOH HOH A . H 6 HOH 29 329 40 HOH HOH A . H 6 HOH 30 330 41 HOH HOH A . H 6 HOH 31 331 42 HOH HOH A . H 6 HOH 32 332 43 HOH HOH A . H 6 HOH 33 333 44 HOH HOH A . H 6 HOH 34 334 46 HOH HOH A . H 6 HOH 35 335 48 HOH HOH A . H 6 HOH 36 336 50 HOH HOH A . H 6 HOH 37 337 51 HOH HOH A . H 6 HOH 38 338 52 HOH HOH A . H 6 HOH 39 339 53 HOH HOH A . H 6 HOH 40 340 56 HOH HOH A . H 6 HOH 41 341 60 HOH HOH A . H 6 HOH 42 342 61 HOH HOH A . H 6 HOH 43 343 63 HOH HOH A . H 6 HOH 44 344 66 HOH HOH A . H 6 HOH 45 345 67 HOH HOH A . H 6 HOH 46 346 68 HOH HOH A . H 6 HOH 47 347 69 HOH HOH A . H 6 HOH 48 348 70 HOH HOH A . H 6 HOH 49 349 72 HOH HOH A . H 6 HOH 50 350 76 HOH HOH A . H 6 HOH 51 351 77 HOH HOH A . H 6 HOH 52 352 78 HOH HOH A . H 6 HOH 53 353 81 HOH HOH A . H 6 HOH 54 354 82 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DG 13 ? P ? B DG 2 P 2 1 Y 1 C DG 13 ? OP1 ? B DG 2 OP1 3 1 Y 1 C DG 13 ? OP2 ? B DG 2 OP2 4 1 Y 1 A MET 1 ? CG ? C MET 4 CG 5 1 Y 1 A MET 1 ? SD ? C MET 4 SD 6 1 Y 1 A MET 1 ? CE ? C MET 4 CE 7 1 Y 1 A LYS 4 ? CG ? C LYS 7 CG 8 1 Y 1 A LYS 4 ? CD ? C LYS 7 CD 9 1 Y 1 A LYS 4 ? CE ? C LYS 7 CE 10 1 Y 1 A LYS 4 ? NZ ? C LYS 7 NZ 11 1 Y 1 A ILE 7 ? CG1 ? C ILE 10 CG1 12 1 Y 1 A ILE 7 ? CG2 ? C ILE 10 CG2 13 1 Y 1 A ILE 7 ? CD1 ? C ILE 10 CD1 14 1 Y 1 A ARG 8 ? NE ? C ARG 11 NE 15 1 Y 1 A ARG 8 ? CZ ? C ARG 11 CZ 16 1 Y 1 A ARG 8 ? NH1 ? C ARG 11 NH1 17 1 Y 1 A ARG 8 ? NH2 ? C ARG 11 NH2 18 1 Y 1 A LYS 16 ? CE ? C LYS 19 CE 19 1 Y 1 A LYS 16 ? NZ ? C LYS 19 NZ 20 1 Y 1 A ASP 20 ? CB ? C ASP 23 CB 21 1 Y 1 A ASP 20 ? CG ? C ASP 23 CG 22 1 Y 1 A ASP 20 ? OD1 ? C ASP 23 OD1 23 1 Y 1 A ASP 20 ? OD2 ? C ASP 23 OD2 24 1 Y 1 A ARG 28 ? CG ? C ARG 31 CG 25 1 Y 1 A ARG 28 ? CD ? C ARG 31 CD 26 1 Y 1 A ARG 28 ? NE ? C ARG 31 NE 27 1 Y 1 A ARG 28 ? CZ ? C ARG 31 CZ 28 1 Y 1 A ARG 28 ? NH1 ? C ARG 31 NH1 29 1 Y 1 A ARG 28 ? NH2 ? C ARG 31 NH2 30 1 Y 1 A LYS 50 ? CG ? C LYS 53 CG 31 1 Y 1 A LYS 50 ? CD ? C LYS 53 CD 32 1 Y 1 A LYS 50 ? CE ? C LYS 53 CE 33 1 Y 1 A LYS 50 ? NZ ? C LYS 53 NZ 34 1 Y 1 A LYS 53 ? CG ? C LYS 56 CG 35 1 Y 1 A LYS 53 ? CD ? C LYS 56 CD 36 1 Y 1 A LYS 53 ? CE ? C LYS 56 CE 37 1 Y 1 A LYS 53 ? NZ ? C LYS 56 NZ 38 1 Y 1 A ARG 54 ? CB ? C ARG 57 CB 39 1 Y 1 A ARG 54 ? CG ? C ARG 57 CG 40 1 Y 1 A ARG 54 ? CD ? C ARG 57 CD 41 1 Y 1 A ARG 54 ? NE ? C ARG 57 NE 42 1 Y 1 A ARG 54 ? CZ ? C ARG 57 CZ 43 1 Y 1 A ARG 54 ? NH1 ? C ARG 57 NH1 44 1 Y 1 A ARG 54 ? NH2 ? C ARG 57 NH2 45 1 Y 1 A GLU 57 ? CB ? C GLU 60 CB 46 1 Y 1 A GLU 57 ? CG ? C GLU 60 CG 47 1 Y 1 A GLU 57 ? CD ? C GLU 60 CD 48 1 Y 1 A GLU 57 ? OE1 ? C GLU 60 OE1 49 1 Y 1 A GLU 57 ? OE2 ? C GLU 60 OE2 50 1 Y 1 A ARG 60 ? CD ? C ARG 63 CD 51 1 Y 1 A ARG 60 ? NE ? C ARG 63 NE 52 1 Y 1 A ARG 60 ? CZ ? C ARG 63 CZ 53 1 Y 1 A ARG 60 ? NH1 ? C ARG 63 NH1 54 1 Y 1 A ARG 60 ? NH2 ? C ARG 63 NH2 55 1 Y 1 A GLU 71 ? CB ? C GLU 74 CB 56 1 Y 1 A GLU 71 ? CG ? C GLU 74 CG 57 1 Y 1 A GLU 71 ? CD ? C GLU 74 CD 58 1 Y 1 A GLU 71 ? OE1 ? C GLU 74 OE1 59 1 Y 1 A GLU 71 ? OE2 ? C GLU 74 OE2 60 1 Y 1 A GLN 75 ? CB ? C GLN 78 CB 61 1 Y 1 A GLN 75 ? CG ? C GLN 78 CG 62 1 Y 1 A GLN 75 ? CD ? C GLN 78 CD 63 1 Y 1 A GLN 75 ? OE1 ? C GLN 78 OE1 64 1 Y 1 A GLN 75 ? NE2 ? C GLN 78 NE2 65 1 Y 1 A ARG 78 ? CB ? C ARG 81 CB 66 1 Y 1 A ARG 78 ? CG ? C ARG 81 CG 67 1 Y 1 A ARG 78 ? CD ? C ARG 81 CD 68 1 Y 1 A ARG 78 ? NE ? C ARG 81 NE 69 1 Y 1 A ARG 78 ? CZ ? C ARG 81 CZ 70 1 Y 1 A ARG 78 ? NH1 ? C ARG 81 NH1 71 1 Y 1 A ARG 78 ? NH2 ? C ARG 81 NH2 72 1 Y 1 A ARG 88 ? CG ? C ARG 91 CG 73 1 Y 1 A ARG 88 ? CD ? C ARG 91 CD 74 1 Y 1 A ARG 88 ? NE ? C ARG 91 NE 75 1 Y 1 A ARG 88 ? CZ ? C ARG 91 CZ 76 1 Y 1 A ARG 88 ? NH1 ? C ARG 91 NH1 77 1 Y 1 A ARG 88 ? NH2 ? C ARG 91 NH2 78 1 Y 1 A LYS 92 ? CD ? C LYS 95 CD 79 1 Y 1 A LYS 92 ? CE ? C LYS 95 CE 80 1 Y 1 A LYS 92 ? NZ ? C LYS 95 NZ 81 1 Y 1 A LYS 100 ? CD ? C LYS 103 CD 82 1 Y 1 A LYS 100 ? CE ? C LYS 103 CE 83 1 Y 1 A LYS 100 ? NZ ? C LYS 103 NZ 84 1 Y 1 A GLU 104 ? CD ? C GLU 107 CD 85 1 Y 1 A GLU 104 ? OE1 ? C GLU 107 OE1 86 1 Y 1 A GLU 104 ? OE2 ? C GLU 107 OE2 87 1 Y 1 A ARG 153 ? CG ? C ARG 156 CG 88 1 Y 1 A ARG 153 ? CD ? C ARG 156 CD 89 1 Y 1 A ARG 153 ? NE ? C ARG 156 NE 90 1 Y 1 A ARG 153 ? CZ ? C ARG 156 CZ 91 1 Y 1 A ARG 153 ? NH1 ? C ARG 156 NH1 92 1 Y 1 A ARG 153 ? NH2 ? C ARG 156 NH2 93 1 Y 1 A ASP 155 ? CG ? C ASP 158 CG 94 1 Y 1 A ASP 155 ? OD1 ? C ASP 158 OD1 95 1 Y 1 A ASP 155 ? OD2 ? C ASP 158 OD2 96 1 Y 1 A GLU 160 ? CG ? C GLU 163 CG 97 1 Y 1 A GLU 160 ? CD ? C GLU 163 CD 98 1 Y 1 A GLU 160 ? OE1 ? C GLU 163 OE1 99 1 Y 1 A GLU 160 ? OE2 ? C GLU 163 OE2 100 1 Y 1 A LYS 167 ? CG ? C LYS 170 CG 101 1 Y 1 A LYS 167 ? CD ? C LYS 170 CD 102 1 Y 1 A LYS 167 ? CE ? C LYS 170 CE 103 1 Y 1 A LYS 167 ? NZ ? C LYS 170 NZ 104 1 Y 1 A LYS 171 ? CE ? C LYS 174 CE 105 1 Y 1 A LYS 171 ? NZ ? C LYS 174 NZ 106 1 Y 1 A GLU 172 ? CG ? C GLU 175 CG 107 1 Y 1 A GLU 172 ? CD ? C GLU 175 CD 108 1 Y 1 A GLU 172 ? OE1 ? C GLU 175 OE1 109 1 Y 1 A GLU 172 ? OE2 ? C GLU 175 OE2 110 1 Y 1 A LYS 190 ? CB ? C LYS 193 CB 111 1 Y 1 A LYS 190 ? CG ? C LYS 193 CG 112 1 Y 1 A LYS 190 ? CD ? C LYS 193 CD 113 1 Y 1 A LYS 190 ? CE ? C LYS 193 CE 114 1 Y 1 A LYS 190 ? NZ ? C LYS 193 NZ 115 1 Y 1 A GLN 192 ? CB ? C GLN 195 CB 116 1 Y 1 A GLN 192 ? CG ? C GLN 195 CG 117 1 Y 1 A GLN 192 ? CD ? C GLN 195 CD 118 1 Y 1 A GLN 192 ? OE1 ? C GLN 195 OE1 119 1 Y 1 A GLN 192 ? NE2 ? C GLN 195 NE2 120 1 Y 1 A SER 193 ? CB ? C SER 196 CB 121 1 Y 1 A SER 193 ? OG ? C SER 196 OG 122 1 Y 1 A SER 198 ? CB ? C SER 201 CB 123 1 Y 1 A SER 198 ? OG ? C SER 201 OG 124 1 Y 1 A LEU 202 ? CG ? C LEU 205 CG 125 1 Y 1 A LEU 202 ? CD1 ? C LEU 205 CD1 126 1 Y 1 A LEU 202 ? CD2 ? C LEU 205 CD2 127 1 Y 1 A ARG 206 ? CB ? C ARG 209 CB 128 1 Y 1 A ARG 206 ? CG ? C ARG 209 CG 129 1 Y 1 A ARG 206 ? CD ? C ARG 209 CD 130 1 Y 1 A ARG 206 ? NE ? C ARG 209 NE 131 1 Y 1 A ARG 206 ? CZ ? C ARG 209 CZ 132 1 Y 1 A ARG 206 ? NH1 ? C ARG 209 NH1 133 1 Y 1 A ARG 206 ? NH2 ? C ARG 209 NH2 134 1 Y 1 A LYS 209 ? CE ? C LYS 212 CE 135 1 Y 1 A LYS 209 ? NZ ? C LYS 212 NZ 136 1 Y 1 A LYS 210 ? CG ? C LYS 213 CG 137 1 Y 1 A LYS 210 ? CD ? C LYS 213 CD 138 1 Y 1 A LYS 210 ? CE ? C LYS 213 CE 139 1 Y 1 A LYS 210 ? NZ ? C LYS 213 NZ 140 1 Y 1 A ARG 211 ? CB ? C ARG 214 CB 141 1 Y 1 A ARG 211 ? CG ? C ARG 214 CG 142 1 Y 1 A ARG 211 ? CD ? C ARG 214 CD 143 1 Y 1 A ARG 211 ? NE ? C ARG 214 NE 144 1 Y 1 A ARG 211 ? CZ ? C ARG 214 CZ 145 1 Y 1 A ARG 211 ? NH1 ? C ARG 214 NH1 146 1 Y 1 A ARG 211 ? NH2 ? C ARG 214 NH2 147 1 Y 1 A ARG 213 ? CG ? C ARG 216 CG 148 1 Y 1 A ARG 213 ? CD ? C ARG 216 CD 149 1 Y 1 A ARG 213 ? NE ? C ARG 216 NE 150 1 Y 1 A ARG 213 ? CZ ? C ARG 216 CZ 151 1 Y 1 A ARG 213 ? NH1 ? C ARG 216 NH1 152 1 Y 1 A ARG 213 ? NH2 ? C ARG 216 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1ORP _cell.length_a 67.732 _cell.length_b 106.516 _cell.length_c 41.661 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORP _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1ORP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_percent_sol 52.07 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 8000, Tris, beta-mercaptoethanol , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 Tris ? ? ? 1 3 1 beta-mercaptoethanol ? ? ? 1 4 2 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2003-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9363 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9363 # _reflns.entry_id 1ORP _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.2 _reflns.number_obs 15614 _reflns.number_all 16279 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24 _reflns.B_iso_Wilson_estimate 35.1 _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.341 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1689 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ORP _refine.ls_number_reflns_obs 14943 _refine.ls_number_reflns_all 15919 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF 570754.36 _refine.pdbx_data_cutoff_low_absF 0 _refine.pdbx_data_cutoff_high_rms_absF 570754.36 _refine.ls_d_res_low 24.51 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 93.8 _refine.ls_R_factor_obs 0.241 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.0 _refine.ls_number_reflns_R_free 1190 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 57.2 _refine.aniso_B[1][1] 0.68 _refine.aniso_B[2][2] -15.11 _refine.aniso_B[3][3] 14.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.390554 _refine.solvent_model_param_bsol 74.6102 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1ORN' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ORP _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1579 _refine_hist.pdbx_number_atoms_nucleic_acid 416 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 2075 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 24.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.94 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.35 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.04 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 5.10 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.14 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.28 _refine_ls_shell.number_reflns_R_work 1275 _refine_ls_shell.R_factor_R_work 0.348 _refine_ls_shell.percent_reflns_obs 89.2 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 7.5 _refine_ls_shell.number_reflns_R_free 104 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 5 PED_FS4.PARAM PED_FS4.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1ORP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ORP _struct.title 'Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ORP _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1ORP 1ORP ? ? ? 2 2 PDB 1ORP 1ORP ? ? ? 3 3 PDB 1ORP 1ORP ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ORP B 1 ? 11 ? 1ORP 1 ? 11 ? 1 11 2 2 1ORP C 1 ? 11 ? 1ORP 12 ? 22 ? 12 22 3 3 1ORP A 1 ? 226 ? 1ORP -2 ? 223 ? -2 223 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 6 ? PHE C 21 ? THR A 3 PHE A 18 1 ? 16 HELX_P HELX_P2 2 ASN C 32 ? SER C 43 ? ASN A 29 SER A 40 1 ? 12 HELX_P HELX_P3 3 THR C 47 ? TYR C 62 ? THR A 44 TYR A 59 1 ? 16 HELX_P HELX_P4 4 THR C 64 ? VAL C 71 ? THR A 61 VAL A 68 1 ? 8 HELX_P HELX_P5 5 PRO C 72 ? ILE C 80 ? PRO A 69 ILE A 77 1 ? 9 HELX_P HELX_P6 6 LEU C 85 ? TYR C 104 ? LEU A 82 TYR A 101 1 ? 20 HELX_P HELX_P7 7 ASP C 111 ? MET C 116 ? ASP A 108 MET A 113 1 ? 6 HELX_P HELX_P8 8 GLY C 122 ? GLY C 135 ? GLY A 119 GLY A 132 1 ? 14 HELX_P HELX_P9 9 ASP C 142 ? LEU C 152 ? ASP A 139 LEU A 149 1 ? 11 HELX_P HELX_P10 10 SER C 160 ? ILE C 172 ? SER A 157 ILE A 169 1 ? 13 HELX_P HELX_P11 12 GLU C 176 ? HIS C 191 ? GLU A 173 HIS A 188 1 ? 16 HELX_P HELX_P12 13 GLN C 198 ? CYS C 202 ? GLN A 195 CYS A 199 5 ? 5 HELX_P HELX_P13 14 LEU C 204 ? LEU C 207 ? LEU A 201 LEU A 204 5 ? 4 HELX_P HELX_P14 15 CYS C 208 ? ARG C 216 ? CYS A 205 ARG A 213 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B DA 6 "O3'" ? ? ? 1_555 B PED 7 P ? ? C DA 17 C PED 18 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale one ? B PED 7 "O3'" ? ? ? 1_555 B DG 8 P ? ? C PED 18 C DG 19 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale none ? B PED 7 "C1'" ? ? ? 1_555 C LYS 124 NZ ? ? C PED 18 A LYS 121 1_555 ? ? ? ? ? ? ? 1.469 ? ? metalc1 metalc ? ? B DC 10 OP1 ? ? ? 1_555 D NA . NA ? ? C DC 21 A NA 224 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc2 metalc ? ? G HOH . O ? ? ? 1_555 D NA . NA ? ? C HOH 34 A NA 224 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc3 metalc ? ? C MET 116 O ? ? ? 1_555 D NA . NA ? ? A MET 113 A NA 224 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc4 metalc ? ? C LEU 118 O ? ? ? 1_555 D NA . NA ? ? A LEU 115 A NA 224 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc5 metalc ? ? C VAL 121 O ? ? ? 1_555 D NA . NA ? ? A VAL 118 A NA 224 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc6 metalc ? ? C CYS 192 SG ? ? ? 1_555 E SF4 . FE2 ? ? A CYS 189 A SF4 300 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc7 metalc ? ? C CYS 199 SG ? ? ? 1_555 E SF4 . FE3 ? ? A CYS 196 A SF4 300 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc8 metalc ? ? C CYS 202 SG ? ? ? 1_555 E SF4 . FE1 ? ? A CYS 199 A SF4 300 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc9 metalc ? ? C CYS 208 SG ? ? ? 1_555 E SF4 . FE4 ? ? A CYS 205 A SF4 300 1_555 ? ? ? ? ? ? ? 2.416 ? ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 2 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 2 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 3 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 4 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 4 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? B DC 5 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 7 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 7 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 8 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 9 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 10 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 10 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 11 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DC 10 ? C DC 21 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? G HOH . ? C HOH 34 ? 1_555 83.9 ? 2 OP1 ? B DC 10 ? C DC 21 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C MET 116 ? A MET 113 ? 1_555 163.8 ? 3 O ? G HOH . ? C HOH 34 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C MET 116 ? A MET 113 ? 1_555 80.0 ? 4 OP1 ? B DC 10 ? C DC 21 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C LEU 118 ? A LEU 115 ? 1_555 92.4 ? 5 O ? G HOH . ? C HOH 34 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C LEU 118 ? A LEU 115 ? 1_555 170.2 ? 6 O ? C MET 116 ? A MET 113 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C LEU 118 ? A LEU 115 ? 1_555 103.6 ? 7 OP1 ? B DC 10 ? C DC 21 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C VAL 121 ? A VAL 118 ? 1_555 90.7 ? 8 O ? G HOH . ? C HOH 34 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C VAL 121 ? A VAL 118 ? 1_555 72.0 ? 9 O ? C MET 116 ? A MET 113 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C VAL 121 ? A VAL 118 ? 1_555 84.7 ? 10 O ? C LEU 118 ? A LEU 115 ? 1_555 NA ? D NA . ? A NA 224 ? 1_555 O ? C VAL 121 ? A VAL 118 ? 1_555 99.1 ? 11 SG ? C CYS 192 ? A CYS 189 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S1 ? E SF4 . ? A SF4 300 ? 1_555 103.3 ? 12 SG ? C CYS 192 ? A CYS 189 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 115.0 ? 13 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 107.9 ? 14 SG ? C CYS 192 ? A CYS 189 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 124.8 ? 15 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 98.5 ? 16 S3 ? E SF4 . ? A SF4 300 ? 1_555 FE2 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 105.0 ? 17 SG ? C CYS 199 ? A CYS 196 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S1 ? E SF4 . ? A SF4 300 ? 1_555 107.2 ? 18 SG ? C CYS 199 ? A CYS 196 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S2 ? E SF4 . ? A SF4 300 ? 1_555 125.5 ? 19 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S2 ? E SF4 . ? A SF4 300 ? 1_555 103.7 ? 20 SG ? C CYS 199 ? A CYS 196 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 107.7 ? 21 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 104.6 ? 22 S2 ? E SF4 . ? A SF4 300 ? 1_555 FE3 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 106.4 ? 23 SG ? C CYS 202 ? A CYS 199 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S2 ? E SF4 . ? A SF4 300 ? 1_555 118.8 ? 24 SG ? C CYS 202 ? A CYS 199 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 118.7 ? 25 S2 ? E SF4 . ? A SF4 300 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 99.9 ? 26 SG ? C CYS 202 ? A CYS 199 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 116.0 ? 27 S2 ? E SF4 . ? A SF4 300 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 100.8 ? 28 S3 ? E SF4 . ? A SF4 300 ? 1_555 FE1 ? E SF4 . ? A SF4 300 ? 1_555 S4 ? E SF4 . ? A SF4 300 ? 1_555 99.3 ? 29 SG ? C CYS 208 ? A CYS 205 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S1 ? E SF4 . ? A SF4 300 ? 1_555 117.1 ? 30 SG ? C CYS 208 ? A CYS 205 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S2 ? E SF4 . ? A SF4 300 ? 1_555 108.4 ? 31 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S2 ? E SF4 . ? A SF4 300 ? 1_555 100.9 ? 32 SG ? C CYS 208 ? A CYS 205 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 118.3 ? 33 S1 ? E SF4 . ? A SF4 300 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 103.6 ? 34 S2 ? E SF4 . ? A SF4 300 ? 1_555 FE4 ? E SF4 . ? A SF4 300 ? 1_555 S3 ? E SF4 . ? A SF4 300 ? 1_555 106.8 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id PED _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 7 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id C _pdbx_modification_feature.modified_residue_label_seq_id 124 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id PED _pdbx_modification_feature.auth_asym_id C _pdbx_modification_feature.auth_seq_id 18 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 121 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom "C1'" _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 7 _pdbx_modification_feature.ref_comp_id PED _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 224 ? 5 'BINDING SITE FOR RESIDUE NA A 224' AC2 Software A SF4 300 ? 7 'BINDING SITE FOR RESIDUE SF4 A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 MET C 116 ? MET A 113 . ? 1_555 ? 2 AC1 5 LEU C 118 ? LEU A 115 . ? 1_555 ? 3 AC1 5 VAL C 121 ? VAL A 118 . ? 1_555 ? 4 AC1 5 DC B 10 ? DC C 21 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH C 34 . ? 1_555 ? 6 AC2 7 LEU C 152 ? LEU A 149 . ? 1_555 ? 7 AC2 7 PHE C 187 ? PHE A 184 . ? 1_555 ? 8 AC2 7 CYS C 192 ? CYS A 189 . ? 1_555 ? 9 AC2 7 CYS C 199 ? CYS A 196 . ? 1_555 ? 10 AC2 7 CYS C 202 ? CYS A 199 . ? 1_555 ? 11 AC2 7 CYS C 208 ? CYS A 205 . ? 1_555 ? 12 AC2 7 GLY C 211 ? GLY A 208 . ? 1_555 ? # _pdbx_entry_details.entry_id 1ORP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 60 ? ? -140.56 -9.51 2 1 ASP A 139 ? ? -113.52 -166.21 3 1 LYS A 171 ? ? -32.01 -39.86 4 1 HIS A 188 ? ? -134.71 -75.40 5 1 LEU A 204 ? ? -142.94 12.80 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;Authors informed that the sequence of the protein has not yet been published. Residues Gly -2, Ser -1 and His 0 are cloning artifacts. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DT 12 ? B DT 1 2 1 Y 1 A GLY -2 ? C GLY 1 3 1 Y 1 A SER -1 ? C SER 2 4 1 Y 1 A HIS 0 ? C HIS 3 5 1 Y 1 A LYS 214 ? C LYS 217 6 1 Y 1 A ARG 215 ? C ARG 218 7 1 Y 1 A GLU 216 ? C GLU 219 8 1 Y 1 A GLU 217 ? C GLU 220 9 1 Y 1 A LYS 218 ? C LYS 221 10 1 Y 1 A ALA 219 ? C ALA 222 11 1 Y 1 A ALA 220 ? C ALA 223 12 1 Y 1 A ASN 221 ? C ASN 224 13 1 Y 1 A GLN 222 ? C GLN 225 14 1 Y 1 A LYS 223 ? C LYS 226 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 NA NA NA N N 393 PED P P N N 394 PED O1P O N N 395 PED O2P O N N 396 PED O3P O N N 397 PED "O5'" O N N 398 PED "C2'" C N N 399 PED "C5'" C N N 400 PED "C4'" C N R 401 PED "O4'" O N N 402 PED "C3'" C N S 403 PED "C1'" C N N 404 PED "O3'" O N N 405 PED HOP2 H N N 406 PED HOP3 H N N 407 PED "H2'1" H N N 408 PED "H2'2" H N N 409 PED "H5'1" H N N 410 PED "H5'2" H N N 411 PED "H4'1" H N N 412 PED "HO'4" H N N 413 PED "H3'" H N N 414 PED "H1'1" H N N 415 PED "H1'2" H N N 416 PED "H1'3" H N N 417 PED H3T H N N 418 PHE N N N N 419 PHE CA C N S 420 PHE C C N N 421 PHE O O N N 422 PHE CB C N N 423 PHE CG C Y N 424 PHE CD1 C Y N 425 PHE CD2 C Y N 426 PHE CE1 C Y N 427 PHE CE2 C Y N 428 PHE CZ C Y N 429 PHE OXT O N N 430 PHE H H N N 431 PHE H2 H N N 432 PHE HA H N N 433 PHE HB2 H N N 434 PHE HB3 H N N 435 PHE HD1 H N N 436 PHE HD2 H N N 437 PHE HE1 H N N 438 PHE HE2 H N N 439 PHE HZ H N N 440 PHE HXT H N N 441 PRO N N N N 442 PRO CA C N S 443 PRO C C N N 444 PRO O O N N 445 PRO CB C N N 446 PRO CG C N N 447 PRO CD C N N 448 PRO OXT O N N 449 PRO H H N N 450 PRO HA H N N 451 PRO HB2 H N N 452 PRO HB3 H N N 453 PRO HG2 H N N 454 PRO HG3 H N N 455 PRO HD2 H N N 456 PRO HD3 H N N 457 PRO HXT H N N 458 SER N N N N 459 SER CA C N S 460 SER C C N N 461 SER O O N N 462 SER CB C N N 463 SER OG O N N 464 SER OXT O N N 465 SER H H N N 466 SER H2 H N N 467 SER HA H N N 468 SER HB2 H N N 469 SER HB3 H N N 470 SER HG H N N 471 SER HXT H N N 472 SF4 FE1 FE N N 473 SF4 FE2 FE N N 474 SF4 FE3 FE N N 475 SF4 FE4 FE N N 476 SF4 S1 S N N 477 SF4 S2 S N N 478 SF4 S3 S N N 479 SF4 S4 S N N 480 THR N N N N 481 THR CA C N S 482 THR C C N N 483 THR O O N N 484 THR CB C N R 485 THR OG1 O N N 486 THR CG2 C N N 487 THR OXT O N N 488 THR H H N N 489 THR H2 H N N 490 THR HA H N N 491 THR HB H N N 492 THR HG1 H N N 493 THR HG21 H N N 494 THR HG22 H N N 495 THR HG23 H N N 496 THR HXT H N N 497 TRP N N N N 498 TRP CA C N S 499 TRP C C N N 500 TRP O O N N 501 TRP CB C N N 502 TRP CG C Y N 503 TRP CD1 C Y N 504 TRP CD2 C Y N 505 TRP NE1 N Y N 506 TRP CE2 C Y N 507 TRP CE3 C Y N 508 TRP CZ2 C Y N 509 TRP CZ3 C Y N 510 TRP CH2 C Y N 511 TRP OXT O N N 512 TRP H H N N 513 TRP H2 H N N 514 TRP HA H N N 515 TRP HB2 H N N 516 TRP HB3 H N N 517 TRP HD1 H N N 518 TRP HE1 H N N 519 TRP HE3 H N N 520 TRP HZ2 H N N 521 TRP HZ3 H N N 522 TRP HH2 H N N 523 TRP HXT H N N 524 TYR N N N N 525 TYR CA C N S 526 TYR C C N N 527 TYR O O N N 528 TYR CB C N N 529 TYR CG C Y N 530 TYR CD1 C Y N 531 TYR CD2 C Y N 532 TYR CE1 C Y N 533 TYR CE2 C Y N 534 TYR CZ C Y N 535 TYR OH O N N 536 TYR OXT O N N 537 TYR H H N N 538 TYR H2 H N N 539 TYR HA H N N 540 TYR HB2 H N N 541 TYR HB3 H N N 542 TYR HD1 H N N 543 TYR HD2 H N N 544 TYR HE1 H N N 545 TYR HE2 H N N 546 TYR HH H N N 547 TYR HXT H N N 548 VAL N N N N 549 VAL CA C N S 550 VAL C C N N 551 VAL O O N N 552 VAL CB C N N 553 VAL CG1 C N N 554 VAL CG2 C N N 555 VAL OXT O N N 556 VAL H H N N 557 VAL H2 H N N 558 VAL HA H N N 559 VAL HB H N N 560 VAL HG11 H N N 561 VAL HG12 H N N 562 VAL HG13 H N N 563 VAL HG21 H N N 564 VAL HG22 H N N 565 VAL HG23 H N N 566 VAL HXT H N N 567 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PED P O1P doub N N 386 PED P O2P sing N N 387 PED P O3P sing N N 388 PED P "O5'" sing N N 389 PED O2P HOP2 sing N N 390 PED O3P HOP3 sing N N 391 PED "O5'" "C5'" sing N N 392 PED "C2'" "C3'" sing N N 393 PED "C2'" "C1'" sing N N 394 PED "C2'" "H2'1" sing N N 395 PED "C2'" "H2'2" sing N N 396 PED "C5'" "C4'" sing N N 397 PED "C5'" "H5'1" sing N N 398 PED "C5'" "H5'2" sing N N 399 PED "C4'" "O4'" sing N N 400 PED "C4'" "C3'" sing N N 401 PED "C4'" "H4'1" sing N N 402 PED "O4'" "HO'4" sing N N 403 PED "C3'" "O3'" sing N N 404 PED "C3'" "H3'" sing N N 405 PED "C1'" "H1'1" sing N N 406 PED "C1'" "H1'2" sing N N 407 PED "C1'" "H1'3" sing N N 408 PED "O3'" H3T sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PRO N CA sing N N 433 PRO N CD sing N N 434 PRO N H sing N N 435 PRO CA C sing N N 436 PRO CA CB sing N N 437 PRO CA HA sing N N 438 PRO C O doub N N 439 PRO C OXT sing N N 440 PRO CB CG sing N N 441 PRO CB HB2 sing N N 442 PRO CB HB3 sing N N 443 PRO CG CD sing N N 444 PRO CG HG2 sing N N 445 PRO CG HG3 sing N N 446 PRO CD HD2 sing N N 447 PRO CD HD3 sing N N 448 PRO OXT HXT sing N N 449 SER N CA sing N N 450 SER N H sing N N 451 SER N H2 sing N N 452 SER CA C sing N N 453 SER CA CB sing N N 454 SER CA HA sing N N 455 SER C O doub N N 456 SER C OXT sing N N 457 SER CB OG sing N N 458 SER CB HB2 sing N N 459 SER CB HB3 sing N N 460 SER OG HG sing N N 461 SER OXT HXT sing N N 462 SF4 FE1 S2 sing N N 463 SF4 FE1 S3 sing N N 464 SF4 FE1 S4 sing N N 465 SF4 FE2 S1 sing N N 466 SF4 FE2 S3 sing N N 467 SF4 FE2 S4 sing N N 468 SF4 FE3 S1 sing N N 469 SF4 FE3 S2 sing N N 470 SF4 FE3 S4 sing N N 471 SF4 FE4 S1 sing N N 472 SF4 FE4 S2 sing N N 473 SF4 FE4 S3 sing N N 474 THR N CA sing N N 475 THR N H sing N N 476 THR N H2 sing N N 477 THR CA C sing N N 478 THR CA CB sing N N 479 THR CA HA sing N N 480 THR C O doub N N 481 THR C OXT sing N N 482 THR CB OG1 sing N N 483 THR CB CG2 sing N N 484 THR CB HB sing N N 485 THR OG1 HG1 sing N N 486 THR CG2 HG21 sing N N 487 THR CG2 HG22 sing N N 488 THR CG2 HG23 sing N N 489 THR OXT HXT sing N N 490 TRP N CA sing N N 491 TRP N H sing N N 492 TRP N H2 sing N N 493 TRP CA C sing N N 494 TRP CA CB sing N N 495 TRP CA HA sing N N 496 TRP C O doub N N 497 TRP C OXT sing N N 498 TRP CB CG sing N N 499 TRP CB HB2 sing N N 500 TRP CB HB3 sing N N 501 TRP CG CD1 doub Y N 502 TRP CG CD2 sing Y N 503 TRP CD1 NE1 sing Y N 504 TRP CD1 HD1 sing N N 505 TRP CD2 CE2 doub Y N 506 TRP CD2 CE3 sing Y N 507 TRP NE1 CE2 sing Y N 508 TRP NE1 HE1 sing N N 509 TRP CE2 CZ2 sing Y N 510 TRP CE3 CZ3 doub Y N 511 TRP CE3 HE3 sing N N 512 TRP CZ2 CH2 doub Y N 513 TRP CZ2 HZ2 sing N N 514 TRP CZ3 CH2 sing Y N 515 TRP CZ3 HZ3 sing N N 516 TRP CH2 HH2 sing N N 517 TRP OXT HXT sing N N 518 TYR N CA sing N N 519 TYR N H sing N N 520 TYR N H2 sing N N 521 TYR CA C sing N N 522 TYR CA CB sing N N 523 TYR CA HA sing N N 524 TYR C O doub N N 525 TYR C OXT sing N N 526 TYR CB CG sing N N 527 TYR CB HB2 sing N N 528 TYR CB HB3 sing N N 529 TYR CG CD1 doub Y N 530 TYR CG CD2 sing Y N 531 TYR CD1 CE1 sing Y N 532 TYR CD1 HD1 sing N N 533 TYR CD2 CE2 doub Y N 534 TYR CD2 HD2 sing N N 535 TYR CE1 CZ doub Y N 536 TYR CE1 HE1 sing N N 537 TYR CE2 CZ sing Y N 538 TYR CE2 HE2 sing N N 539 TYR CZ OH sing N N 540 TYR OH HH sing N N 541 TYR OXT HXT sing N N 542 VAL N CA sing N N 543 VAL N H sing N N 544 VAL N H2 sing N N 545 VAL CA C sing N N 546 VAL CA CB sing N N 547 VAL CA HA sing N N 548 VAL C O doub N N 549 VAL C OXT sing N N 550 VAL CB CG1 sing N N 551 VAL CB CG2 sing N N 552 VAL CB HB sing N N 553 VAL CG1 HG11 sing N N 554 VAL CG1 HG12 sing N N 555 VAL CG1 HG13 sing N N 556 VAL CG2 HG21 sing N N 557 VAL CG2 HG22 sing N N 558 VAL CG2 HG23 sing N N 559 VAL OXT HXT sing N N 560 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ORP 'b-form double helix' 1ORP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 11 1_555 -0.427 0.113 -0.418 -24.507 -1.246 -13.937 1 B_DA2:DT22_C B 2 ? C 22 ? 20 1 1 A DG 3 1_555 B DC 10 1_555 0.055 -0.136 -0.108 -4.357 -12.642 4.221 2 B_DG3:DC21_C B 3 ? C 21 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 -0.064 0.107 0.024 -2.175 -7.016 -1.242 3 B_DA4:DT20_C B 4 ? C 20 ? 20 1 1 A DC 5 1_555 B DG 8 1_555 0.333 0.172 -0.318 17.758 -8.538 4.077 4 B_DC5:DG19_C B 5 ? C 19 ? 19 1 1 A DT 7 1_555 B DA 6 1_555 -0.793 0.094 0.329 -8.560 -7.875 0.568 5 B_DT7:DA17_C B 7 ? C 17 ? 20 1 1 A DG 8 1_555 B DC 5 1_555 0.710 0.019 0.081 4.495 2.063 3.949 6 B_DG8:DC16_C B 8 ? C 16 ? 19 1 1 A DG 9 1_555 B DC 4 1_555 -0.540 0.092 0.046 -6.388 -3.767 7.002 7 B_DG9:DC15_C B 9 ? C 15 ? 19 1 1 A DA 10 1_555 B DT 3 1_555 0.432 -0.023 -0.176 -5.595 -5.123 -5.547 8 B_DA10:DT14_C B 10 ? C 14 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.572 -0.100 -0.375 0.479 12.993 4.520 9 B_DC11:DG13_C B 11 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 11 1_555 A DG 3 1_555 B DC 10 1_555 0.342 0.333 2.899 -1.818 0.792 38.079 0.422 -0.726 2.886 1.214 2.784 38.129 1 BB_DA2DG3:DC21DT22_CC B 2 ? C 22 ? B 3 ? C 21 ? 1 A DG 3 1_555 B DC 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.485 0.167 3.181 -3.617 2.561 32.231 -0.141 0.245 3.219 4.585 6.476 32.527 2 BB_DG3DA4:DT20DC21_CC B 3 ? C 21 ? B 4 ? C 20 ? 1 A DA 4 1_555 B DT 9 1_555 A DC 5 1_555 B DG 8 1_555 0.675 -0.339 2.726 3.125 2.335 29.966 -1.049 -0.762 2.747 4.491 -6.011 30.213 3 BB_DA4DC5:DG19DT20_CC B 4 ? C 20 ? B 5 ? C 19 ? 1 A DT 7 1_555 B DA 6 1_555 A DG 8 1_555 B DC 5 1_555 0.477 0.160 3.103 -0.307 2.325 40.043 -0.018 -0.729 3.103 3.392 0.447 40.108 4 BB_DT7DG8:DC16DA17_CC B 7 ? C 17 ? B 8 ? C 16 ? 1 A DG 8 1_555 B DC 5 1_555 A DG 9 1_555 B DC 4 1_555 -0.356 -0.307 3.575 -1.993 6.026 29.160 -1.962 0.241 3.459 11.794 3.901 29.828 5 BB_DG8DG9:DC15DC16_CC B 8 ? C 16 ? B 9 ? C 15 ? 1 A DG 9 1_555 B DC 4 1_555 A DA 10 1_555 B DT 3 1_555 -0.860 -0.272 3.308 -1.839 1.375 41.587 -0.530 1.012 3.331 1.935 2.587 41.647 6 BB_DG9DA10:DT14DC15_CC B 9 ? C 15 ? B 10 ? C 14 ? 1 A DA 10 1_555 B DT 3 1_555 A DC 11 1_555 B DG 2 1_555 1.399 -0.279 3.346 -0.162 0.256 32.217 -0.549 -2.551 3.337 0.461 0.292 32.218 7 BB_DA10DC11:DG13DT14_CC B 10 ? C 14 ? B 11 ? C 13 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ORN _pdbx_initial_refinement_model.details 'PDB ENTRY 1ORN' # _atom_sites.entry_id 1ORP _atom_sites.fract_transf_matrix[1][1] 0.014764 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009388 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024003 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N NA O P S # loop_