HEADER TRANSFERASE/DNA 19-MAR-03 1OSB TITLE CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-FREE TITLE 2 STRUCTURE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA OLIGONUCLEOTIDE; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA FORMING A CRUCIFORM ARM; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRWC PROTEIN; COMPND 8 CHAIN: A, C; COMPND 9 FRAGMENT: N-TERMINAL RELAXASE DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL CONJUGATION, RELAXASE, DNA REPLICATION, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GUASCH,M.LUCAS,G.MONCALIAN,M.CABEZAS,R.PEREZ-LUQUE,F.X.GOMIS-RUTH, AUTHOR 2 F.DE LA CRUZ,M.COLL REVDAT 5 16-AUG-23 1OSB 1 REMARK REVDAT 4 28-JUL-21 1OSB 1 REMARK REVDAT 3 24-FEB-09 1OSB 1 VERSN REVDAT 2 09-DEC-03 1OSB 1 JRNL REVDAT 1 25-NOV-03 1OSB 0 JRNL AUTH A.GUASCH,M.LUCAS,G.MONCALIAN,M.CABEZAS,R.PEREZ-LUQUE, JRNL AUTH 2 F.X.GOMIS-RUTH,F.DE LA CRUZ,M.COLL JRNL TITL RECOGNITION AND PROCESSING OF THE ORIGIN OF TRANSFER DNA BY JRNL TITL 2 CONJUGATIVE RELAXASE TRWC. JRNL REF NAT.STRUCT.BIOL. V. 10 1002 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625590 JRNL DOI 10.1038/NSB1017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GRANDOSO,P.AVILA,A.CAYON,M.A.HERNANDO,M.LLOSA,F.DE LA CRUZ REMARK 1 TITL TWO ACTIVE-SITE TYROSYL RESIDUES OF PROTEIN TRWC ACT REMARK 1 TITL 2 SEQUENTIALLY AT THE ORIGIN OF TRANSFER DURING PLASMID R388 REMARK 1 TITL 3 CONJUGATION REMARK 1 REF J.MOL.BIOL. V. 295 1163 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.3425 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.LLOSA,F.X.GOMIS-RUTH,M.COLL,F.DE LA CRUZ REMARK 1 TITL BACTERIAL CONJUGATION: A TWO-STEP MECHANISM FOR DNA REMARK 1 TITL 2 TRANSPORT. REMARK 1 REF MOL.MICROBIOL. V. 45 1 2002 REMARK 1 REFN ISSN 0950-382X REMARK 1 DOI 10.1046/J.1365-2958.2002.03014.X REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 27852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.200 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4488 REMARK 3 NUCLEIC ACID ATOMS : 1012 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.012 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.484 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEGMM 2000, 0.2 M AMMONIUM REMARK 280 SULPHATE, 0.1 M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.22667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.34000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.11333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 25 REMARK 465 TYR A 26 REMARK 465 TYR A 27 REMARK 465 ALA A 28 REMARK 465 LYS A 29 REMARK 465 ASP A 30 REMARK 465 ASP C 21 REMARK 465 GLY C 22 REMARK 465 ALA C 23 REMARK 465 ASP C 24 REMARK 465 ASP C 25 REMARK 465 TYR C 26 REMARK 465 TYR C 27 REMARK 465 ALA C 28 REMARK 465 LYS C 29 REMARK 465 ASP C 30 REMARK 465 SER C 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 14 C7 REMARK 470 DT B 18 C7 REMARK 470 DT B 20 C7 REMARK 470 DT B 21 C7 REMARK 470 DT B 23 C7 REMARK 470 DT B 25 C7 REMARK 470 DT D 14 C7 REMARK 470 DT D 18 C7 REMARK 470 DT D 20 C7 REMARK 470 DT D 21 C7 REMARK 470 DT D 23 C7 REMARK 470 DT D 25 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 156 O THR C 270 1.88 REMARK 500 NH1 ARG A 274 O HOH A 515 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 22 O3' DG B 22 C3' -0.043 REMARK 500 DC D 24 O3' DC D 24 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 DA B 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG B 13 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 18 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT B 21 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT B 25 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA D 9 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG D 17 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 18 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 20 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT D 21 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT D 25 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT D 25 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 246 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 249 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG C 56 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 56 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP C 103 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG C 112 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 112 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C 116 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 116 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 136 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG C 136 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 100.28 54.99 REMARK 500 GLU A 65 62.38 37.19 REMARK 500 ARG A 154 -30.11 -39.60 REMARK 500 GLN A 159 88.63 -156.99 REMARK 500 SER A 271 120.54 -28.80 REMARK 500 ASP C 32 81.94 61.37 REMARK 500 GLU C 65 58.01 39.19 REMARK 500 GLN C 132 -10.15 69.93 REMARK 500 ARG C 154 -32.63 -37.83 REMARK 500 GLN C 159 86.00 -157.19 REMARK 500 SER C 233 63.63 -119.18 REMARK 500 SER C 271 121.19 -28.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMH RELATED DB: PDB DBREF 1OSB A 1 293 UNP Q47673 Q47673_ECOLI 1 293 DBREF 1OSB C 1 293 UNP Q47673 Q47673_ECOLI 1 293 DBREF 1OSB B 1 25 PDB 1OSB 1OSB 1 25 DBREF 1OSB D 1 25 PDB 1OSB 1OSB 1 25 SEQRES 1 B 25 DG DC DG DC DA DC DC DG DA DA DA DG DG SEQRES 2 B 25 DT DG DC DG DT DA DT DT DG DT DC DT SEQRES 1 D 25 DG DC DG DC DA DC DC DG DA DA DA DG DG SEQRES 2 D 25 DT DG DC DG DT DA DT DT DG DT DC DT SEQRES 1 A 293 MET LEU SER HIS MET VAL LEU THR ARG GLN ASP ILE GLY SEQRES 2 A 293 ARG ALA ALA SER TYR TYR GLU ASP GLY ALA ASP ASP TYR SEQRES 3 A 293 TYR ALA LYS ASP GLY ASP ALA SER GLU TRP GLN GLY LYS SEQRES 4 A 293 GLY ALA GLU GLU LEU GLY LEU SER GLY GLU VAL ASP SER SEQRES 5 A 293 LYS ARG PHE ARG GLU LEU LEU ALA GLY ASN ILE GLY GLU SEQRES 6 A 293 GLY HIS ARG ILE MET ARG SER ALA THR ARG GLN ASP SER SEQRES 7 A 293 LYS GLU ARG ILE GLY LEU ASP LEU THR PHE SER ALA PRO SEQRES 8 A 293 LYS SER VAL SER LEU GLN ALA LEU VAL ALA GLY ASP ALA SEQRES 9 A 293 GLU ILE ILE LYS ALA HIS ASP ARG ALA VAL ALA ARG THR SEQRES 10 A 293 LEU GLU GLN ALA GLU ALA ARG ALA GLN ALA ARG GLN LYS SEQRES 11 A 293 ILE GLN GLY LYS THR ARG ILE GLU THR THR GLY ASN LEU SEQRES 12 A 293 VAL ILE GLY LYS PHE ARG HIS GLU THR SER ARG GLU ARG SEQRES 13 A 293 ASP PRO GLN LEU HIS THR HIS ALA VAL ILE LEU ASN MET SEQRES 14 A 293 THR LYS ARG SER ASP GLY GLN TRP ARG ALA LEU LYS ASN SEQRES 15 A 293 ASP GLU ILE VAL LYS ALA THR ARG TYR LEU GLY ALA VAL SEQRES 16 A 293 TYR ASN ALA GLU LEU ALA HIS GLU LEU GLN LYS LEU GLY SEQRES 17 A 293 TYR GLN LEU ARG TYR GLY LYS ASP GLY ASN PHE ASP LEU SEQRES 18 A 293 ALA HIS ILE ASP ARG GLN GLN ILE GLU GLY PHE SER LYS SEQRES 19 A 293 ARG THR GLU GLN ILE ALA GLU TRP TYR ALA ALA ARG GLY SEQRES 20 A 293 LEU ASP PRO ASN SER VAL SER LEU GLU GLN LYS GLN ALA SEQRES 21 A 293 ALA LYS VAL LEU SER ARG ALA LYS LYS THR SER VAL ASP SEQRES 22 A 293 ARG GLU ALA LEU ARG ALA GLU TRP GLN ALA THR ALA LYS SEQRES 23 A 293 GLU LEU GLY ILE ASP PHE SER SEQRES 1 C 293 MET LEU SER HIS MET VAL LEU THR ARG GLN ASP ILE GLY SEQRES 2 C 293 ARG ALA ALA SER TYR TYR GLU ASP GLY ALA ASP ASP TYR SEQRES 3 C 293 TYR ALA LYS ASP GLY ASP ALA SER GLU TRP GLN GLY LYS SEQRES 4 C 293 GLY ALA GLU GLU LEU GLY LEU SER GLY GLU VAL ASP SER SEQRES 5 C 293 LYS ARG PHE ARG GLU LEU LEU ALA GLY ASN ILE GLY GLU SEQRES 6 C 293 GLY HIS ARG ILE MET ARG SER ALA THR ARG GLN ASP SER SEQRES 7 C 293 LYS GLU ARG ILE GLY LEU ASP LEU THR PHE SER ALA PRO SEQRES 8 C 293 LYS SER VAL SER LEU GLN ALA LEU VAL ALA GLY ASP ALA SEQRES 9 C 293 GLU ILE ILE LYS ALA HIS ASP ARG ALA VAL ALA ARG THR SEQRES 10 C 293 LEU GLU GLN ALA GLU ALA ARG ALA GLN ALA ARG GLN LYS SEQRES 11 C 293 ILE GLN GLY LYS THR ARG ILE GLU THR THR GLY ASN LEU SEQRES 12 C 293 VAL ILE GLY LYS PHE ARG HIS GLU THR SER ARG GLU ARG SEQRES 13 C 293 ASP PRO GLN LEU HIS THR HIS ALA VAL ILE LEU ASN MET SEQRES 14 C 293 THR LYS ARG SER ASP GLY GLN TRP ARG ALA LEU LYS ASN SEQRES 15 C 293 ASP GLU ILE VAL LYS ALA THR ARG TYR LEU GLY ALA VAL SEQRES 16 C 293 TYR ASN ALA GLU LEU ALA HIS GLU LEU GLN LYS LEU GLY SEQRES 17 C 293 TYR GLN LEU ARG TYR GLY LYS ASP GLY ASN PHE ASP LEU SEQRES 18 C 293 ALA HIS ILE ASP ARG GLN GLN ILE GLU GLY PHE SER LYS SEQRES 19 C 293 ARG THR GLU GLN ILE ALA GLU TRP TYR ALA ALA ARG GLY SEQRES 20 C 293 LEU ASP PRO ASN SER VAL SER LEU GLU GLN LYS GLN ALA SEQRES 21 C 293 ALA LYS VAL LEU SER ARG ALA LYS LYS THR SER VAL ASP SEQRES 22 C 293 ARG GLU ALA LEU ARG ALA GLU TRP GLN ALA THR ALA LYS SEQRES 23 C 293 GLU LEU GLY ILE ASP PHE SER HET SO4 B 801 5 HET SO4 B 802 5 HET SO4 D 807 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 C 806 5 HET SO4 C 808 5 HET SO4 C 809 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *257(H2 O) HELIX 1 1 ASP A 11 SER A 17 1 7 HELIX 2 2 GLY A 38 LEU A 44 1 7 HELIX 3 3 ASP A 51 ALA A 60 1 10 HELIX 4 4 PRO A 91 VAL A 100 1 10 HELIX 5 5 ASP A 103 ARG A 124 1 22 HELIX 6 6 ASN A 182 LYS A 187 1 6 HELIX 7 7 ALA A 188 LEU A 207 1 20 HELIX 8 8 ASP A 225 GLY A 231 1 7 HELIX 9 9 SER A 233 ARG A 246 1 14 HELIX 10 10 SER A 254 SER A 265 1 12 HELIX 11 11 ASP A 273 LEU A 288 1 16 HELIX 12 12 ASP C 11 SER C 17 1 7 HELIX 13 13 GLY C 38 LEU C 44 1 7 HELIX 14 14 ASP C 51 ALA C 60 1 10 HELIX 15 15 PRO C 91 VAL C 100 1 10 HELIX 16 16 ASP C 103 ARG C 124 1 22 HELIX 17 17 ASN C 182 LYS C 187 1 6 HELIX 18 18 ALA C 188 LEU C 207 1 20 HELIX 19 19 ASP C 225 GLY C 231 1 7 HELIX 20 20 SER C 233 ARG C 246 1 14 HELIX 21 21 SER C 254 SER C 265 1 12 HELIX 22 22 ASP C 273 LEU C 288 1 16 SHEET 1 A 5 LEU A 2 THR A 8 0 SHEET 2 A 5 ARG A 81 SER A 89 -1 O ASP A 85 N MET A 5 SHEET 3 A 5 PRO A 158 LEU A 167 -1 O ALA A 164 N LEU A 86 SHEET 4 A 5 ILE A 145 THR A 152 -1 N HIS A 150 O HIS A 161 SHEET 5 A 5 SER A 34 GLN A 37 -1 N GLU A 35 O LYS A 147 SHEET 1 B 2 GLN A 126 ILE A 131 0 SHEET 2 B 2 LYS A 134 THR A 139 -1 O ARG A 136 N GLN A 129 SHEET 1 C 2 THR A 170 LYS A 171 0 SHEET 2 C 2 TRP A 177 ARG A 178 -1 O ARG A 178 N THR A 170 SHEET 1 D 2 LEU A 211 TYR A 213 0 SHEET 2 D 2 PHE A 219 LEU A 221 -1 O ASP A 220 N ARG A 212 SHEET 1 E 5 LEU C 2 THR C 8 0 SHEET 2 E 5 ARG C 81 SER C 89 -1 O THR C 87 N SER C 3 SHEET 3 E 5 PRO C 158 LEU C 167 -1 O ALA C 164 N LEU C 86 SHEET 4 E 5 ILE C 145 THR C 152 -1 N HIS C 150 O HIS C 161 SHEET 5 E 5 SER C 34 GLN C 37 -1 N GLU C 35 O LYS C 147 SHEET 1 F 2 GLN C 126 ILE C 131 0 SHEET 2 F 2 LYS C 134 THR C 139 -1 O GLU C 138 N ALA C 127 SHEET 1 G 2 THR C 170 LYS C 171 0 SHEET 2 G 2 TRP C 177 ARG C 178 -1 O ARG C 178 N THR C 170 SHEET 1 H 2 LEU C 211 TYR C 213 0 SHEET 2 H 2 PHE C 219 LEU C 221 -1 O ASP C 220 N ARG C 212 CISPEP 1 TYR A 19 GLU A 20 0 -20.20 SITE 1 AC1 8 SER A 3 THR A 87 LYS A 262 HOH A 501 SITE 2 AC1 8 HOH A 502 DG B 22 DC B 24 DT B 25 SITE 1 AC2 5 HIS A 150 HIS A 161 HIS A 163 SO4 A 803 SITE 2 AC2 5 DT B 25 SITE 1 AC3 6 ASP A 21 HIS A 150 GLU A 151 THR A 152 SITE 2 AC3 6 ARG A 274 SO4 B 802 SITE 1 AC4 1 ARG A 154 SITE 1 AC5 3 GLN A 176 ARG A 278 LYS C 53 SITE 1 AC6 2 ARG C 14 ARG C 154 SITE 1 AC7 9 SER C 3 THR C 87 LYS C 262 HOH C 657 SITE 2 AC7 9 DG D 22 DC D 24 DT D 25 HOH D 656 SITE 3 AC7 9 HOH D 658 SITE 1 AC8 3 LYS A 53 HIS C 67 ARG C 68 SITE 1 AC9 4 HIS C 150 GLU C 151 THR C 152 ARG C 274 CRYST1 147.780 147.780 78.680 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006767 0.003907 0.000000 0.00000 SCALE2 0.000000 0.007814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012710 0.00000