HEADER BIOSYNTHETIC PROTEIN 23-MAR-03 1OTV TITLE PQQC, PYRROLOQUINOLINQUINONE SYNTHASE C COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME PQQ SYNTHESIS PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: PQQC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS SEVEN HELIX BUNDLE, DIMER, PQQ BIOSYNTHESIS ENZYME, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.T.MAGNUSSON,H.TOYAMA,M.SAEKI,A.ROJAS,J.C.REED,O.ADACHI,J.P.KLINMAN, AUTHOR 2 R.SCHWARZENBACHER REVDAT 7 14-FEB-24 1OTV 1 REMARK REVDAT 6 27-OCT-21 1OTV 1 REMARK SEQADV REVDAT 5 31-JAN-18 1OTV 1 REMARK REVDAT 4 13-JUL-11 1OTV 1 VERSN REVDAT 3 24-FEB-09 1OTV 1 VERSN REVDAT 2 01-JUN-04 1OTV 1 JRNL REVDAT 1 11-MAY-04 1OTV 0 JRNL AUTH O.T.MAGNUSSON,H.TOYAMA,M.SAEKI,A.ROJAS,J.C.REED,O.ADACHI, JRNL AUTH 2 R.C.LIDDINGTON,J.P.KLINMAN,R.SCHWARZENBACHER JRNL TITL QUINONE BIOGENESIS: STRUCTURE AND MECHANISM OF PQQC, THE JRNL TITL 2 FINAL CATALYST IN THE PRODUCTION OF PYRROLOQUINOLINE JRNL TITL 3 QUINONE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 7913 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15148379 JRNL DOI 10.1073/PNAS.0402640101 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1787 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4039 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3546 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5477 ; 1.588 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8184 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4551 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 917 ; 0.230 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3904 ; 0.253 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2130 ; 0.097 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.221 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.241 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 118 ; 0.343 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.282 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2418 ; 1.722 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3847 ; 2.914 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1621 ; 1.698 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1630 ; 2.673 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 255 REMARK 3 RESIDUE RANGE : B 4 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9570 41.7940 17.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.0260 REMARK 3 T33: 0.0178 T12: 0.0177 REMARK 3 T13: -0.0143 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.1426 L22: -0.1913 REMARK 3 L33: 0.0163 L12: 0.0302 REMARK 3 L13: -0.0918 L23: -0.0404 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0773 S13: -0.1045 REMARK 3 S21: -0.0029 S22: -0.0036 S23: 0.0156 REMARK 3 S31: 0.0310 S32: -0.0050 S33: 0.0031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 152-160 OF CHAIN A AND 151-162 REMARK 3 OF CHAIN B ARE DISORDERED, WITH AN OCCUPANCY OF 0. HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 1OTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14500 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULPHATE, CACODYLATE , REMARK 280 PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 25K, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.07550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.06350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.07550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.06350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.12700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 MET B 1 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 152 REMARK 475 ILE A 153 REMARK 475 HIS A 154 REMARK 475 GLN A 155 REMARK 475 SER A 156 REMARK 475 ARG A 157 REMARK 475 LEU A 158 REMARK 475 ASP A 159 REMARK 475 SER A 160 REMARK 475 PRO B 151 REMARK 475 GLN B 152 REMARK 475 ILE B 153 REMARK 475 HIS B 154 REMARK 475 GLN B 155 REMARK 475 SER B 156 REMARK 475 ARG B 157 REMARK 475 LEU B 158 REMARK 475 ASP B 159 REMARK 475 SER B 160 REMARK 475 TRP B 161 REMARK 475 PRO B 162 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 90 CB CG CD OE1 OE2 REMARK 480 GLU A 170 CB CG CD OE1 OE2 REMARK 480 GLU A 171 CB CG CD OE1 OE2 REMARK 480 ARG A 179 CB CG CD NE CZ NH1 NH2 REMARK 480 HIS B 88 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 90 CB CG CD OE1 OE2 REMARK 480 GLU B 170 CB CG CD OE1 OE2 REMARK 480 GLU B 171 CB CG CD OE1 OE2 REMARK 480 ARG B 179 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 72 O HOH B 299 1.64 REMARK 500 O HOH A 318 O HOH B 289 1.79 REMARK 500 O HOH A 311 O HOH B 301 2.04 REMARK 500 OE1 GLU B 147 O HOH B 307 2.04 REMARK 500 OG SER A 160 CD PRO A 162 2.08 REMARK 500 OE1 GLU B 13 NH1 ARG B 17 2.16 REMARK 500 OD1 ASP B 83 O HOH B 304 2.17 REMARK 500 OE1 GLU A 14 O HOH A 299 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 157 NZ LYS A 242 4555 1.06 REMARK 500 NH2 ARG A 157 NZ LYS A 242 4555 1.25 REMARK 500 NE ARG A 157 NZ LYS A 242 4555 1.78 REMARK 500 NH1 ARG A 157 NZ LYS A 242 4555 1.99 REMARK 500 NH2 ARG A 157 CE LYS A 242 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 PRO A 151 CA - N - CD ANGL. DEV. = -25.1 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 PRO B 151 CA - N - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 PRO B 162 CA - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 PRO B 162 O - C - N ANGL. DEV. = 21.1 DEGREES REMARK 500 GLN B 163 C - N - CA ANGL. DEV. = -27.0 DEGREES REMARK 500 ASP B 216 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 249 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 249 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 -61.98 -95.25 REMARK 500 PRO A 151 -167.05 -62.60 REMARK 500 GLN A 152 58.12 -57.70 REMARK 500 ILE A 153 48.89 31.99 REMARK 500 LEU A 158 -18.58 27.29 REMARK 500 SER A 160 -156.25 -171.82 REMARK 500 PRO B 151 -173.02 -56.07 REMARK 500 GLN B 155 -15.44 -144.84 REMARK 500 ASP B 159 31.33 -84.32 REMARK 500 SER B 160 -63.31 -109.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 AUTHOR DETERMINED THE SECONDARY STRUCTURE DBREF 1OTV A 1 259 UNP P27505 PQQC_KLEPN 1 251 DBREF 1OTV B 1 259 UNP P27505 PQQC_KLEPN 1 251 SEQADV 1OTV ASP A 21 UNP P27505 ALA 21 ENGINEERED MUTATION SEQADV 1OTV LEU A 252 UNP P27505 EXPRESSION TAG SEQADV 1OTV GLU A 253 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 254 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 255 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 256 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 257 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 258 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS A 259 UNP P27505 EXPRESSION TAG SEQADV 1OTV ASP B 21 UNP P27505 ALA 21 ENGINEERED MUTATION SEQADV 1OTV LEU B 252 UNP P27505 EXPRESSION TAG SEQADV 1OTV GLU B 253 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 254 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 255 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 256 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 257 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 258 UNP P27505 EXPRESSION TAG SEQADV 1OTV HIS B 259 UNP P27505 EXPRESSION TAG SEQRES 1 A 259 MET LEU ILE THR ASP THR LEU SER PRO GLN ALA PHE GLU SEQRES 2 A 259 GLU ALA LEU ARG ALA LYS GLY ASP PHE TYR HIS ILE HIS SEQRES 3 A 259 HIS PRO TYR HIS ILE ALA MET HIS ASN GLY ASP ALA THR SEQRES 4 A 259 ARG LYS GLN ILE GLN GLY TRP VAL ALA ASN ARG PHE TYR SEQRES 5 A 259 TYR GLN THR THR ILE PRO LEU LYS ASP ALA ALA ILE MET SEQRES 6 A 259 ALA ASN CYS PRO ASP ALA GLN THR ARG ARG LYS TRP VAL SEQRES 7 A 259 GLN ARG ILE LEU ASP HIS ASP GLY SER HIS GLY GLU ASP SEQRES 8 A 259 GLY GLY ILE GLU ALA TRP LEU ARG LEU GLY GLU ALA VAL SEQRES 9 A 259 GLY LEU SER ARG ASP ASP LEU LEU SER GLU ARG HIS VAL SEQRES 10 A 259 LEU PRO GLY VAL ARG PHE ALA VAL ASP ALA TYR LEU ASN SEQRES 11 A 259 PHE ALA ARG ARG ALA CYS TRP GLN GLU ALA ALA CYS SER SEQRES 12 A 259 SER LEU THR GLU LEU PHE ALA PRO GLN ILE HIS GLN SER SEQRES 13 A 259 ARG LEU ASP SER TRP PRO GLN HIS TYR PRO TRP ILE LYS SEQRES 14 A 259 GLU GLU GLY TYR PHE TYR PHE ARG SER ARG LEU SER GLN SEQRES 15 A 259 ALA ASN ARG ASP VAL GLU HIS GLY LEU ALA LEU ALA LYS SEQRES 16 A 259 ALA TYR CYS ASP SER ALA GLU LYS GLN ASN ARG MET LEU SEQRES 17 A 259 GLU ILE LEU GLN PHE LYS LEU ASP ILE LEU TRP SER MET SEQRES 18 A 259 LEU ASP ALA MET THR MET ALA TYR ALA LEU GLN ARG PRO SEQRES 19 A 259 PRO TYR HIS THR VAL THR ASP LYS ALA ALA TRP HIS THR SEQRES 20 A 259 THR ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MET LEU ILE THR ASP THR LEU SER PRO GLN ALA PHE GLU SEQRES 2 B 259 GLU ALA LEU ARG ALA LYS GLY ASP PHE TYR HIS ILE HIS SEQRES 3 B 259 HIS PRO TYR HIS ILE ALA MET HIS ASN GLY ASP ALA THR SEQRES 4 B 259 ARG LYS GLN ILE GLN GLY TRP VAL ALA ASN ARG PHE TYR SEQRES 5 B 259 TYR GLN THR THR ILE PRO LEU LYS ASP ALA ALA ILE MET SEQRES 6 B 259 ALA ASN CYS PRO ASP ALA GLN THR ARG ARG LYS TRP VAL SEQRES 7 B 259 GLN ARG ILE LEU ASP HIS ASP GLY SER HIS GLY GLU ASP SEQRES 8 B 259 GLY GLY ILE GLU ALA TRP LEU ARG LEU GLY GLU ALA VAL SEQRES 9 B 259 GLY LEU SER ARG ASP ASP LEU LEU SER GLU ARG HIS VAL SEQRES 10 B 259 LEU PRO GLY VAL ARG PHE ALA VAL ASP ALA TYR LEU ASN SEQRES 11 B 259 PHE ALA ARG ARG ALA CYS TRP GLN GLU ALA ALA CYS SER SEQRES 12 B 259 SER LEU THR GLU LEU PHE ALA PRO GLN ILE HIS GLN SER SEQRES 13 B 259 ARG LEU ASP SER TRP PRO GLN HIS TYR PRO TRP ILE LYS SEQRES 14 B 259 GLU GLU GLY TYR PHE TYR PHE ARG SER ARG LEU SER GLN SEQRES 15 B 259 ALA ASN ARG ASP VAL GLU HIS GLY LEU ALA LEU ALA LYS SEQRES 16 B 259 ALA TYR CYS ASP SER ALA GLU LYS GLN ASN ARG MET LEU SEQRES 17 B 259 GLU ILE LEU GLN PHE LYS LEU ASP ILE LEU TRP SER MET SEQRES 18 B 259 LEU ASP ALA MET THR MET ALA TYR ALA LEU GLN ARG PRO SEQRES 19 B 259 PRO TYR HIS THR VAL THR ASP LYS ALA ALA TRP HIS THR SEQRES 20 B 259 THR ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *130(H2 O) HELIX 1 1 SER A 8 TYR A 23 1 16 HELIX 2 3 TYR A 29 ASN A 35 1 7 HELIX 3 4 THR A 39 ASN A 67 1 29 HELIX 4 5 ASP A 70 GLY A 86 1 17 HELIX 5 6 GLY A 92 VAL A 104 1 13 HELIX 6 7 SER A 107 SER A 113 1 7 HELIX 7 8 LEU A 118 ARG A 134 1 17 HELIX 8 9 GLN A 138 SER A 143 1 6 HELIX 9 10 SER A 144 ALA A 150 5 7 HELIX 10 11 LYS A 169 GLN A 182 1 14 HELIX 11 12 GLU A 188 CYS A 198 1 11 HELIX 12 13 SER A 200 ALA A 230 1 31 HELIX 13 14 SER B 8 TYR B 23 1 16 HELIX 14 16 TYR B 29 ASN B 35 1 7 HELIX 15 17 THR B 39 ASN B 67 1 29 HELIX 16 18 ASP B 70 GLY B 86 1 17 HELIX 17 19 GLY B 92 VAL B 104 1 13 HELIX 18 20 SER B 107 SER B 113 1 7 HELIX 19 21 LEU B 118 ARG B 134 1 17 HELIX 20 22 GLN B 138 SER B 143 1 6 HELIX 21 23 SER B 144 ALA B 150 5 7 HELIX 22 24 LYS B 169 GLN B 182 1 14 HELIX 23 25 GLU B 188 CYS B 198 1 11 HELIX 24 26 SER B 200 ALA B 230 1 31 CRYST1 74.151 118.127 68.838 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014527 0.00000