data_1OVF # _entry.id 1OVF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1OVF pdb_00001ovf 10.2210/pdb1ovf/pdb RCSB RCSB018704 ? ? WWPDB D_1000018704 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OVF _pdbx_database_status.recvd_initial_deposition_date 2003-03-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chin, K.-H.' 1 'Chou, S.-H.' 2 'Chen, F.-M.' 3 # _citation.id primary _citation.title ;Solution Structure of the Actd-5'-Ccgtt(3)Gtgg-3' Complex: Drug Interaction with Tandem G.T Mismatches and Hairpin Loop Backbone. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 2622 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12736312 _citation.pdbx_database_id_DOI 10.1093/NAR/GKG353 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chin, K.-H.' 1 ? primary 'Chen, F.-M.' 2 ? primary 'Chou, S.-H.' 3 ? # _cell.entry_id 1OVF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OVF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "(5'-D(*CP*CP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3')" 3371.193 1 ? ? ? ? 2 polymer syn 'ACTINOMYCIN D' 1259.447 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name DACTINOMYCIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DT)(DG)(DG)' CCGTTTTGTGG A ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1890 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1OVF 1 ? ? 1OVF ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OVF A 1 ? 11 ? 1OVF 1 ? 11 ? 1 11 2 2 1OVF B 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 DQF-COSY 1 3 1 '2D TOCSY' 1 # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents 1 '10MM PHOSPHATE BUFFER' 2 '20MM NACL, 90% H2O, 10% D2O' 3 '10MM PHOSPHATE BUFFER' 4 '20MM NACL' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1OVF _pdbx_nmr_refine.method 'DISTANCE GEOMETRY, SIMULATED ANNEALING, MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1OVF _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1OVF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DGII ? ? 1 'structure solution' VNMR ? ? 2 'structure solution' Felix ? ? 3 'structure solution' DGII ? ? 4 # _exptl.entry_id 1OVF _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1OVF _struct.title ;NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OVF _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, MISMATCH, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B THR 1 C ? ? ? 1_555 B DVA 2 N ? ? B THR 1 B DVA 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale one ? B THR 1 OG1 ? ? ? 1_555 B MVA 5 C ? ? B THR 1 B MVA 5 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale3 covale one ? B THR 1 N ? ? ? 1_555 B PXZ 6 C0 ? ? B THR 1 B PXZ 6 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? B DVA 2 C ? ? ? 1_555 B PRO 3 N ? ? B DVA 2 B PRO 3 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale5 covale both ? B PRO 3 C ? ? ? 1_555 B SAR 4 N ? ? B PRO 3 B SAR 4 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale6 covale both ? B SAR 4 C ? ? ? 1_555 B MVA 5 N ? ? B SAR 4 B MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale7 covale one ? B PXZ 6 "C0'" ? ? ? 1_555 B THR 7 N ? ? B PXZ 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale8 covale both ? B THR 7 C ? ? ? 1_555 B DVA 8 N ? ? B THR 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale9 covale one ? B THR 7 OG1 ? ? ? 1_555 B MVA 11 C ? ? B THR 7 B MVA 11 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale10 covale both ? B DVA 8 C ? ? ? 1_555 B PRO 9 N ? ? B DVA 8 B PRO 9 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale11 covale both ? B PRO 9 C ? ? ? 1_555 B SAR 10 N ? ? B PRO 9 B SAR 10 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale12 covale both ? B SAR 10 C ? ? ? 1_555 B MVA 11 N ? ? B SAR 10 B MVA 11 1_555 ? ? ? ? ? ? ? 1.348 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 11 N1 ? ? A DC 1 A DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 11 O6 ? ? A DC 1 A DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 11 N2 ? ? A DC 1 A DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 2 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 2 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 2 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DT 9 O2 ? ? A DG 3 A DT 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DT 9 N3 ? ? A DG 3 A DT 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DG 8 O6 ? ? A DT 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A DT 4 O2 ? ? ? 1_555 A DG 8 N1 ? ? A DT 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DG 8 O6 ? ? A DT 5 A DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A DG 8 N1 ? ? A DT 5 A DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 1 2.89 2 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 1 2.71 3 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 1 4.65 4 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 1 -8.26 5 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 2 2.87 6 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 2 3.04 7 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 2 4.79 8 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 2 -8.38 9 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 3 4.15 10 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 3 0.06 11 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 3 3.40 12 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 3 -7.33 13 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 4 4.07 14 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 4 -2.81 15 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 4 9.60 16 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 4 -10.63 17 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 5 2.42 18 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 5 -2.89 19 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 5 6.08 20 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 5 -8.35 21 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 6 2.64 22 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 6 -0.67 23 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 6 3.87 24 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 6 -7.99 25 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 7 2.42 26 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 7 -3.36 27 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 7 5.97 28 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 7 -8.61 29 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 8 2.20 30 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 8 -3.28 31 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 8 6.03 32 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 8 -8.74 33 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 9 2.67 34 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 9 -3.87 35 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 9 5.31 36 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 9 -7.76 37 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 10 4.51 38 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 10 -0.15 39 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 10 3.58 40 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 10 -7.03 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN B OF ACTINOMYCIN D' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DC A 2 ? DC A 2 . ? 1_555 ? 2 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 9 DT A 4 ? DT A 4 . ? 1_555 ? 4 AC1 9 DT A 5 ? DT A 5 . ? 1_555 ? 5 AC1 9 DT A 6 ? DT A 6 . ? 1_555 ? 6 AC1 9 DT A 7 ? DT A 7 . ? 1_555 ? 7 AC1 9 DG A 8 ? DG A 8 . ? 1_555 ? 8 AC1 9 DT A 9 ? DT A 9 . ? 1_555 ? 9 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? # _database_PDB_matrix.entry_id 1OVF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OVF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n B 2 1 THR 1 1 1 THR THR B . n B 2 2 DVA 2 2 2 DVA DVA B . n B 2 3 PRO 3 3 3 PRO PRO B . n B 2 4 SAR 4 4 4 SAR SAR B . n B 2 5 MVA 5 5 5 MVA MVA B . n B 2 6 PXZ 6 6 6 PXZ PXZ B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 DVA 8 8 8 DVA DVA B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 SAR 10 10 10 SAR SAR B . n B 2 11 MVA 11 11 11 MVA MVA B . n # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000001 _pdbx_molecule.asym_id B # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-27 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Atomic model' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_nmr_software 6 6 'Structure model' pdbx_validate_polymer_linkage 7 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_atom_site.auth_atom_id' 2 6 'Structure model' '_atom_site.label_atom_id' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_nmr_software.name' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_entry_details.entry_id 1OVF _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.71 108.30 6.41 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.35 108.30 2.05 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.05 108.30 3.75 0.30 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.42 108.30 4.12 0.30 N 5 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.25 122.90 -3.65 0.60 N 6 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.55 108.30 5.25 0.30 N 7 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.68 108.30 2.38 0.30 N 8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.61 108.30 3.31 0.30 N 9 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.02 108.30 2.72 0.30 N 10 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.49 108.30 3.19 0.30 N 11 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.95 108.30 6.65 0.30 N 12 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.60 108.30 2.30 0.30 N 13 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.15 108.30 3.85 0.30 N 14 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.37 108.30 4.07 0.30 N 15 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.36 108.30 5.06 0.30 N 16 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.93 108.30 2.63 0.30 N 17 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.77 108.30 3.47 0.30 N 18 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.26 108.30 2.96 0.30 N 19 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.54 108.30 3.24 0.30 N 20 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.43 108.30 6.13 0.30 N 21 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.12 108.30 2.82 0.30 N 22 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.39 108.30 4.09 0.30 N 23 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.22 122.90 -3.68 0.60 N 24 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.71 108.30 5.41 0.30 N 25 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.79 108.30 2.49 0.30 N 26 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.56 108.30 3.26 0.30 N 27 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.99 108.30 2.69 0.30 N 28 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.08 108.30 3.78 0.30 N 29 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.01 108.30 4.71 0.30 N 30 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.78 108.30 4.48 0.30 N 31 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.63 108.30 4.33 0.30 N 32 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.47 108.30 6.17 0.30 N 33 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.37 108.30 4.07 0.30 N 34 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.19 122.90 -3.71 0.60 N 35 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.33 108.30 2.03 0.30 N 36 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.02 108.30 2.72 0.30 N 37 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.43 108.30 3.13 0.30 N 38 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.23 108.30 2.93 0.30 N 39 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.52 108.30 5.22 0.30 N 40 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.38 108.30 4.08 0.30 N 41 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.55 108.30 4.25 0.30 N 42 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.20 108.30 4.90 0.30 N 43 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.62 108.30 3.32 0.30 N 44 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.91 108.30 3.61 0.30 N 45 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.22 122.90 -3.68 0.60 N 46 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.74 108.30 2.44 0.30 N 47 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.39 108.30 3.09 0.30 N 48 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.23 108.30 2.93 0.30 N 49 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.05 108.30 3.75 0.30 N 50 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.53 108.30 4.23 0.30 N 51 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.56 108.30 4.26 0.30 N 52 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.05 108.30 4.75 0.30 N 53 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.12 108.30 5.82 0.30 N 54 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.25 108.30 3.95 0.30 N 55 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.11 122.90 -3.79 0.60 N 56 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.73 108.30 2.43 0.30 N 57 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.66 108.30 3.36 0.30 N 58 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.15 108.30 2.85 0.30 N 59 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.72 108.30 5.42 0.30 N 60 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.43 108.30 2.13 0.30 N 61 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.81 108.30 4.51 0.30 N 62 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.54 108.30 4.24 0.30 N 63 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.86 108.30 4.56 0.30 N 64 7 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.73 108.30 6.43 0.30 N 65 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.95 108.30 3.65 0.30 N 66 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.11 108.30 2.81 0.30 N 67 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.38 108.30 3.08 0.30 N 68 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.88 108.30 3.58 0.30 N 69 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.79 108.30 4.49 0.30 N 70 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.00 108.30 4.70 0.30 N 71 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.62 108.30 4.32 0.30 N 72 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.82 108.30 4.52 0.30 N 73 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.31 108.30 6.01 0.30 N 74 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.15 108.30 3.85 0.30 N 75 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.22 122.90 -3.68 0.60 N 76 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.71 108.30 2.41 0.30 N 77 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.51 108.30 3.21 0.30 N 78 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.35 108.30 3.05 0.30 N 79 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.57 108.30 3.27 0.30 N 80 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.51 108.30 4.21 0.30 N 81 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.30 108.30 4.00 0.30 N 82 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 113.11 108.30 4.81 0.30 N 83 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.88 108.30 2.58 0.30 N 84 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.00 108.30 3.70 0.30 N 85 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.92 108.30 2.62 0.30 N 86 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.67 108.30 3.37 0.30 N 87 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.31 108.30 6.01 0.30 N 88 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.39 108.30 3.09 0.30 N 89 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.71 108.30 4.41 0.30 N 90 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.09 122.90 -3.81 0.60 N 91 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.84 108.30 4.54 0.30 N 92 10 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 115.40 108.30 7.10 0.30 N 93 10 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.05 122.90 -3.85 0.60 N 94 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.32 108.30 4.02 0.30 N 95 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.85 122.90 -4.05 0.60 N 96 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.27 108.30 1.97 0.30 N 97 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.36 108.30 3.06 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DVA B 8 ? ? 59.54 -109.54 2 2 DVA B 8 ? ? 59.09 -109.43 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 2 ? ? 0.133 'SIDE CHAIN' 2 1 DT A 5 ? ? 0.081 'SIDE CHAIN' 3 1 DT A 7 ? ? 0.072 'SIDE CHAIN' 4 1 DG A 8 ? ? 0.090 'SIDE CHAIN' 5 2 DC A 2 ? ? 0.139 'SIDE CHAIN' 6 2 DT A 5 ? ? 0.081 'SIDE CHAIN' 7 2 DT A 7 ? ? 0.069 'SIDE CHAIN' 8 2 DG A 8 ? ? 0.088 'SIDE CHAIN' 9 3 DC A 1 ? ? 0.065 'SIDE CHAIN' 10 3 DC A 2 ? ? 0.160 'SIDE CHAIN' 11 3 DT A 5 ? ? 0.084 'SIDE CHAIN' 12 3 DT A 7 ? ? 0.074 'SIDE CHAIN' 13 3 DG A 8 ? ? 0.089 'SIDE CHAIN' 14 4 DC A 2 ? ? 0.119 'SIDE CHAIN' 15 4 DT A 6 ? ? 0.073 'SIDE CHAIN' 16 4 DT A 7 ? ? 0.064 'SIDE CHAIN' 17 4 DG A 8 ? ? 0.053 'SIDE CHAIN' 18 5 DC A 2 ? ? 0.115 'SIDE CHAIN' 19 5 DT A 5 ? ? 0.077 'SIDE CHAIN' 20 5 DT A 7 ? ? 0.062 'SIDE CHAIN' 21 5 DG A 8 ? ? 0.073 'SIDE CHAIN' 22 6 DC A 2 ? ? 0.139 'SIDE CHAIN' 23 6 DT A 5 ? ? 0.083 'SIDE CHAIN' 24 6 DT A 6 ? ? 0.076 'SIDE CHAIN' 25 6 DT A 7 ? ? 0.071 'SIDE CHAIN' 26 6 DG A 8 ? ? 0.066 'SIDE CHAIN' 27 7 DC A 2 ? ? 0.120 'SIDE CHAIN' 28 7 DT A 5 ? ? 0.072 'SIDE CHAIN' 29 7 DT A 6 ? ? 0.081 'SIDE CHAIN' 30 7 DT A 7 ? ? 0.071 'SIDE CHAIN' 31 7 DG A 8 ? ? 0.064 'SIDE CHAIN' 32 8 DC A 2 ? ? 0.131 'SIDE CHAIN' 33 8 DT A 5 ? ? 0.074 'SIDE CHAIN' 34 8 DT A 6 ? ? 0.075 'SIDE CHAIN' 35 8 DT A 7 ? ? 0.065 'SIDE CHAIN' 36 8 DG A 8 ? ? 0.063 'SIDE CHAIN' 37 9 DC A 2 ? ? 0.129 'SIDE CHAIN' 38 9 DT A 7 ? ? 0.076 'SIDE CHAIN' 39 9 DG A 8 ? ? 0.071 'SIDE CHAIN' 40 10 DC A 2 ? ? 0.142 'SIDE CHAIN' 41 10 DT A 5 ? ? 0.093 'SIDE CHAIN' 42 10 DT A 6 ? ? 0.090 'SIDE CHAIN' 43 10 DT A 7 ? ? 0.080 'SIDE CHAIN' 44 10 DG A 8 ? ? 0.093 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 DVA N N N N 108 DVA CA C N R 109 DVA CB C N N 110 DVA CG1 C N N 111 DVA CG2 C N N 112 DVA C C N N 113 DVA O O N N 114 DVA OXT O N N 115 DVA H H N N 116 DVA H2 H N N 117 DVA HA H N N 118 DVA HB H N N 119 DVA HG11 H N N 120 DVA HG12 H N N 121 DVA HG13 H N N 122 DVA HG21 H N N 123 DVA HG22 H N N 124 DVA HG23 H N N 125 DVA HXT H N N 126 MVA N N N N 127 MVA CN C N N 128 MVA CA C N S 129 MVA CB C N N 130 MVA CG1 C N N 131 MVA CG2 C N N 132 MVA C C N N 133 MVA O O N N 134 MVA OXT O N N 135 MVA H H N N 136 MVA HN1 H N N 137 MVA HN2 H N N 138 MVA HN3 H N N 139 MVA HA H N N 140 MVA HB H N N 141 MVA HG11 H N N 142 MVA HG12 H N N 143 MVA HG13 H N N 144 MVA HG21 H N N 145 MVA HG22 H N N 146 MVA HG23 H N N 147 MVA HXT H N N 148 PRO N N N N 149 PRO CA C N S 150 PRO C C N N 151 PRO O O N N 152 PRO CB C N N 153 PRO CG C N N 154 PRO CD C N N 155 PRO OXT O N N 156 PRO H H N N 157 PRO HA H N N 158 PRO HB2 H N N 159 PRO HB3 H N N 160 PRO HG2 H N N 161 PRO HG3 H N N 162 PRO HD2 H N N 163 PRO HD3 H N N 164 PRO HXT H N N 165 PXZ C1 C Y N 166 PXZ C0 C N N 167 PXZ O1 O N N 168 PXZ C2 C Y N 169 PXZ N2 N N N 170 PXZ C3 C Y N 171 PXZ O3 O N N 172 PXZ C4 C Y N 173 PXZ O5 O Y N 174 PXZ C6 C Y N 175 PXZ C7 C Y N 176 PXZ C8 C Y N 177 PXZ C9 C Y N 178 PXZ "C0'" C N N 179 PXZ "O1'" O N N 180 PXZ N10 N Y N 181 PXZ C11 C Y N 182 PXZ C12 C Y N 183 PXZ C13 C Y N 184 PXZ C14 C Y N 185 PXZ C15 C N N 186 PXZ C16 C N N 187 PXZ H1 H N N 188 PXZ HN21 H N N 189 PXZ HN22 H N N 190 PXZ H7 H N N 191 PXZ H8 H N N 192 PXZ "H1'" H N N 193 PXZ H151 H N N 194 PXZ H152 H N N 195 PXZ H153 H N N 196 PXZ H161 H N N 197 PXZ H162 H N N 198 PXZ H163 H N N 199 SAR N N N N 200 SAR CA C N N 201 SAR C C N N 202 SAR O O N N 203 SAR CN C N N 204 SAR OXT O N N 205 SAR H H N N 206 SAR HA2 H N N 207 SAR HA3 H N N 208 SAR HN1 H N N 209 SAR HN2 H N N 210 SAR HN3 H N N 211 SAR HXT H N N 212 THR N N N N 213 THR CA C N S 214 THR C C N N 215 THR O O N N 216 THR CB C N R 217 THR OG1 O N N 218 THR CG2 C N N 219 THR OXT O N N 220 THR H H N N 221 THR H2 H N N 222 THR HA H N N 223 THR HB H N N 224 THR HG1 H N N 225 THR HG21 H N N 226 THR HG22 H N N 227 THR HG23 H N N 228 THR HXT H N N 229 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 DVA N CA sing N N 112 DVA N H sing N N 113 DVA N H2 sing N N 114 DVA CA CB sing N N 115 DVA CA C sing N N 116 DVA CA HA sing N N 117 DVA CB CG1 sing N N 118 DVA CB CG2 sing N N 119 DVA CB HB sing N N 120 DVA CG1 HG11 sing N N 121 DVA CG1 HG12 sing N N 122 DVA CG1 HG13 sing N N 123 DVA CG2 HG21 sing N N 124 DVA CG2 HG22 sing N N 125 DVA CG2 HG23 sing N N 126 DVA C O doub N N 127 DVA C OXT sing N N 128 DVA OXT HXT sing N N 129 MVA N CN sing N N 130 MVA N CA sing N N 131 MVA N H sing N N 132 MVA CN HN1 sing N N 133 MVA CN HN2 sing N N 134 MVA CN HN3 sing N N 135 MVA CA CB sing N N 136 MVA CA C sing N N 137 MVA CA HA sing N N 138 MVA CB CG1 sing N N 139 MVA CB CG2 sing N N 140 MVA CB HB sing N N 141 MVA CG1 HG11 sing N N 142 MVA CG1 HG12 sing N N 143 MVA CG1 HG13 sing N N 144 MVA CG2 HG21 sing N N 145 MVA CG2 HG22 sing N N 146 MVA CG2 HG23 sing N N 147 MVA C O doub N N 148 MVA C OXT sing N N 149 MVA OXT HXT sing N N 150 PRO N CA sing N N 151 PRO N CD sing N N 152 PRO N H sing N N 153 PRO CA C sing N N 154 PRO CA CB sing N N 155 PRO CA HA sing N N 156 PRO C O doub N N 157 PRO C OXT sing N N 158 PRO CB CG sing N N 159 PRO CB HB2 sing N N 160 PRO CB HB3 sing N N 161 PRO CG CD sing N N 162 PRO CG HG2 sing N N 163 PRO CG HG3 sing N N 164 PRO CD HD2 sing N N 165 PRO CD HD3 sing N N 166 PRO OXT HXT sing N N 167 PXZ C1 C0 sing N N 168 PXZ C1 C2 doub Y N 169 PXZ C1 C11 sing Y N 170 PXZ C0 O1 doub N N 171 PXZ C0 H1 sing N N 172 PXZ C2 N2 sing N N 173 PXZ C2 C3 sing Y N 174 PXZ N2 HN21 sing N N 175 PXZ N2 HN22 sing N N 176 PXZ C3 O3 doub N N 177 PXZ C3 C4 sing Y N 178 PXZ C4 C12 doub Y N 179 PXZ C4 C15 sing N N 180 PXZ O5 C12 sing Y N 181 PXZ O5 C13 sing Y N 182 PXZ C6 C7 doub Y N 183 PXZ C6 C13 sing Y N 184 PXZ C6 C16 sing N N 185 PXZ C7 C8 sing Y N 186 PXZ C7 H7 sing N N 187 PXZ C8 C9 doub Y N 188 PXZ C8 H8 sing N N 189 PXZ C9 "C0'" sing N N 190 PXZ C9 C14 sing Y N 191 PXZ "C0'" "O1'" doub N N 192 PXZ "C0'" "H1'" sing N N 193 PXZ N10 C11 doub Y N 194 PXZ N10 C14 sing Y N 195 PXZ C11 C12 sing Y N 196 PXZ C13 C14 doub Y N 197 PXZ C15 H151 sing N N 198 PXZ C15 H152 sing N N 199 PXZ C15 H153 sing N N 200 PXZ C16 H161 sing N N 201 PXZ C16 H162 sing N N 202 PXZ C16 H163 sing N N 203 SAR N CA sing N N 204 SAR N CN sing N N 205 SAR N H sing N N 206 SAR CA C sing N N 207 SAR CA HA2 sing N N 208 SAR CA HA3 sing N N 209 SAR C O doub N N 210 SAR C OXT sing N N 211 SAR CN HN1 sing N N 212 SAR CN HN2 sing N N 213 SAR CN HN3 sing N N 214 SAR OXT HXT sing N N 215 THR N CA sing N N 216 THR N H sing N N 217 THR N H2 sing N N 218 THR CA C sing N N 219 THR CA CB sing N N 220 THR CA HA sing N N 221 THR C O doub N N 222 THR C OXT sing N N 223 THR CB OG1 sing N N 224 THR CB CG2 sing N N 225 THR CB HB sing N N 226 THR OG1 HG1 sing N N 227 THR CG2 HG21 sing N N 228 THR CG2 HG22 sing N N 229 THR CG2 HG23 sing N N 230 THR OXT HXT sing N N 231 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1OVF 'double helix' 1OVF 'b-form double helix' 1OVF 'hairpin loop' 1OVF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 11 1_555 0.798 -0.288 0.345 -12.382 -17.717 -1.306 1 A_DC1:DG11_A A 1 ? A 11 ? 19 1 1 A DC 2 1_555 A DG 10 1_555 0.047 -0.038 -0.290 3.186 -13.532 -0.056 2 A_DC2:DG10_A A 2 ? A 10 ? 19 1 1 A DG 3 1_555 A DT 9 1_555 -1.617 -0.381 0.901 21.881 10.928 1.244 3 A_DG3:DT9_A A 3 ? A 9 ? 28 1 1 A DT 4 1_555 A DG 8 1_555 1.486 -0.389 0.559 -14.190 8.954 -6.797 4 A_DT4:DG8_A A 4 ? A 8 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 11 1_555 A DC 2 1_555 A DG 10 1_555 -0.179 -1.360 2.768 11.852 6.693 27.898 -3.568 2.148 2.143 12.952 -22.935 30.982 1 AA_DC1DC2:DG10DG11_AA A 1 ? A 11 ? A 2 ? A 10 ? 1 A DC 2 1_555 A DG 10 1_555 A DG 3 1_555 A DT 9 1_555 0.272 1.529 2.948 -10.067 11.973 14.558 -0.964 -5.016 2.743 36.212 30.448 21.338 2 AA_DC2DG3:DT9DG10_AA A 2 ? A 10 ? A 3 ? A 9 ? #