HEADER OXIDOREDUCTASE(FLAVOPROTEIN) 25-AUG-94 1OYC TITLE OLD YELLOW ENZYME AT 2 ANGSTROMS RESOLUTION: OVERALL STRUCTURE, LIGAND TITLE 2 BINDING AND COMPARISON WITH RELATED FLAVOPROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLD YELLOW ENZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 1.6.99.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_TAXID: 27292; SOURCE 4 GENE: OYE1; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: PET; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS OXIDOREDUCTASE(FLAVOPROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR K.M.FOX,P.A.KARPLUS REVDAT 5 14-FEB-24 1OYC 1 REMARK REVDAT 4 24-FEB-09 1OYC 1 VERSN REVDAT 3 01-APR-03 1OYC 1 JRNL REVDAT 2 08-MAR-95 1OYC 1 JRNL REMARK REVDAT 1 30-NOV-94 1OYC 0 JRNL AUTH K.M.FOX,P.A.KARPLUS JRNL TITL OLD YELLOW ENZYME AT 2 A RESOLUTION: OVERALL STRUCTURE, JRNL TITL 2 LIGAND BINDING, AND COMPARISON WITH RELATED FLAVOPROTEINS. JRNL REF STRUCTURE V. 2 1089 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 7881908 JRNL DOI 10.1016/S0969-2126(94)00111-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 63008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26517 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.50500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.44000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.25750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.44000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.75250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.25750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.75250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.50500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.01000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 399 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 348 H1 HOH A 508 1.22 REMARK 500 HH TYR A 313 HH11 ARG A 322 1.24 REMARK 500 HE21 GLN A 114 HN3 FMN A 401 1.32 REMARK 500 O HOH A 565 H1 HOH A 569 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 29 NE2 HIS A 29 CD2 -0.069 REMARK 500 HIS A 105 NE2 HIS A 105 CD2 -0.099 REMARK 500 HIS A 159 NE2 HIS A 159 CD2 -0.083 REMARK 500 HIS A 191 NE2 HIS A 191 CD2 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 18 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 38 CG - CD - NE ANGL. DEV. = -25.5 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP A 52 CD1 - CG - CD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP A 52 CB - CG - CD1 ANGL. DEV. = -9.1 DEGREES REMARK 500 TRP A 52 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 52 CE2 - CD2 - CG ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP A 52 CG - CD2 - CE3 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 82 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 82 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 VAL A 88 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 VAL A 88 CG1 - CB - CG2 ANGL. DEV. = 12.1 DEGREES REMARK 500 TRP A 89 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 89 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 89 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU A 91 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 TRP A 97 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 GLU A 106 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 TRP A 112 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 116 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 GLU A 146 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 ALA A 154 CB - CA - C ANGL. DEV. = -9.3 DEGREES REMARK 500 LYS A 178 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 220 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 VAL A 232 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 LYS A 239 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 VAL A 249 CG1 - CB - CG2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 275 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 VAL A 285 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 291 NH1 - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP A 316 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 316 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 HIS A 329 CE1 - NE2 - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 334 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 155.39 -34.84 REMARK 500 VAL A 88 36.15 -143.07 REMARK 500 ASP A 211 -156.23 -96.70 REMARK 500 ALA A 278 23.80 -61.05 REMARK 500 GLU A 299 118.38 -34.71 REMARK 500 GLU A 305 44.15 -107.15 REMARK 500 ASP A 355 44.42 -108.05 REMARK 500 PRO A 365 159.62 -43.25 REMARK 500 TYR A 382 -61.40 -137.66 REMARK 500 TRP A 396 42.96 -79.33 REMARK 500 ASP A 397 105.34 51.50 REMARK 500 LYS A 398 137.24 120.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 313 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 396 -12.18 REMARK 500 ASP A 397 18.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 DBREF 1OYC A 1 399 UNP Q02899 OYE1_SACPS 1 399 SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU TRP SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET FMN A 401 35 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *126(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ASN A 155 1 12 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 VAL A 249 MET A 253 5 5 HELIX 13 13 SER A 254 GLU A 258 5 5 HELIX 14 14 GLY A 260 ALA A 278 1 19 HELIX 15 15 SER A 308 ILE A 315 5 8 HELIX 16 16 HIS A 329 VAL A 337 1 9 HELIX 17 17 GLY A 347 ASN A 353 1 7 HELIX 18 18 ASP A 355 GLY A 363 1 9 HELIX 19 19 ASP A 370 PHE A 374 5 5 HELIX 20 20 THR A 387 LEU A 394 1 8 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 N ASN A 25 O ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 O VAL A 320 N LEU A 343 SHEET 4 B 8 VAL A 285 VAL A 288 1 O VAL A 285 N ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 O LEU A 242 N HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 O VAL A 188 N GLY A 241 SHEET 7 B 8 PHE A 110 TRP A 116 1 O VAL A 111 N GLY A 187 SHEET 8 B 8 MET A 67 PHE A 74 1 O ILE A 68 N TRP A 112 SHEET 1 C 2 TYR A 134 SER A 136 0 SHEET 2 C 2 GLN A 158 SER A 160 1 N HIS A 159 O TYR A 134 CISPEP 1 HIS A 43 PRO A 44 0 -4.88 SITE 1 AC1 15 PRO A 35 LEU A 36 THR A 37 GLY A 72 SITE 2 AC1 15 GLN A 114 HIS A 191 ASN A 194 ARG A 243 SITE 3 AC1 15 GLY A 324 ASN A 325 GLY A 347 ARG A 348 SITE 4 AC1 15 HOH A 536 HOH A 540 HOH A 615 CRYST1 142.880 142.880 43.010 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023250 0.00000