HEADER HYDROLASE 05-APR-03 1OYM OBSLTE 02-SEP-03 1OYM 1Q9M TITLE CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH (R)-ROLIPRAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC PHOSPHODIESTERASE PDE4D2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: DPDE3, PDE43, PDE4D2; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (CODONPLUS); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CYCLIC NUCLEOTIDE, CAMP, PDE SELECTIVE INHIBITORS, ROLIPRAM EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUAI,H.WANG,Y.SUN,H.Y.KIM,Y.LIU,H.KE REVDAT 2 02-SEP-03 1OYM 1 OBSLTE REVDAT 1 15-JUL-03 1OYM 0 JRNL AUTH Q.HUAI,H.WANG,Y.SUN,H.Y.KIM,Y.LIU,H.KE JRNL TITL THREE-DIMENSIONAL STRUCTURES OF PDE4D IN COMPLEX JRNL TITL 2 WITH ROLIPRAMS AND IMPLICATION ON INHIBITOR JRNL TITL 3 SELECTIVITY JRNL REF STRUCTURE V. 11 865 2003 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 75736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7639 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33500 REMARK 3 B22 (A**2) : -0.01100 REMARK 3 B33 (A**2) : -0.32400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTOPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.824 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.412 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.456 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.973 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : ROLIPRAM.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OYM COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-2003. REMARK 100 THE RCSB ID CODE IS RCSB018806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-2002 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : QUATAN 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NACL, 20 MM TRIS-HCL, 1 MM B- REMARK 280 ME, AND 1 MM EDTA, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.63600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.45400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.24650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.45400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.63600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.24650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 413 REMARK 465 PRO A 414 REMARK 465 SER A 415 REMARK 465 PRO A 416 REMARK 465 ALA A 417 REMARK 465 PRO A 418 REMARK 465 ASP A 419 REMARK 465 ASP A 420 REMARK 465 PRO A 421 REMARK 465 GLU A 422 REMARK 465 GLU A 423 REMARK 465 GLY A 424 REMARK 465 ARG A 425 REMARK 465 GLN A 426 REMARK 465 GLY A 427 REMARK 465 GLN A 428 REMARK 465 THR A 429 REMARK 465 GLU A 430 REMARK 465 LYS A 431 REMARK 465 PHE A 432 REMARK 465 GLN A 433 REMARK 465 PHE A 434 REMARK 465 GLU A 435 REMARK 465 LEU A 436 REMARK 465 THR A 437 REMARK 465 LEU A 438 REMARK 465 ILE B 79 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 PHE B 82 REMARK 465 GLY B 83 REMARK 465 VAL B 84 REMARK 465 LYS B 85 REMARK 465 SER B 413 REMARK 465 PRO B 414 REMARK 465 SER B 415 REMARK 465 PRO B 416 REMARK 465 ALA B 417 REMARK 465 PRO B 418 REMARK 465 ASP B 419 REMARK 465 ASP B 420 REMARK 465 PRO B 421 REMARK 465 GLU B 422 REMARK 465 GLU B 423 REMARK 465 GLY B 424 REMARK 465 ARG B 425 REMARK 465 GLN B 426 REMARK 465 GLY B 427 REMARK 465 GLN B 428 REMARK 465 THR B 429 REMARK 465 GLU B 430 REMARK 465 LYS B 431 REMARK 465 PHE B 432 REMARK 465 GLN B 433 REMARK 465 PHE B 434 REMARK 465 GLU B 435 REMARK 465 LEU B 436 REMARK 465 THR B 437 REMARK 465 LEU B 438 REMARK 465 ILE C 79 REMARK 465 PRO C 80 REMARK 465 ARG C 81 REMARK 465 PHE C 82 REMARK 465 GLY C 83 REMARK 465 VAL C 84 REMARK 465 LYS C 85 REMARK 465 SER C 413 REMARK 465 PRO C 414 REMARK 465 SER C 415 REMARK 465 PRO C 416 REMARK 465 ALA C 417 REMARK 465 PRO C 418 REMARK 465 ASP C 419 REMARK 465 ASP C 420 REMARK 465 PRO C 421 REMARK 465 GLU C 422 REMARK 465 GLU C 423 REMARK 465 GLY C 424 REMARK 465 ARG C 425 REMARK 465 GLN C 426 REMARK 465 GLY C 427 REMARK 465 GLN C 428 REMARK 465 THR C 429 REMARK 465 GLU C 430 REMARK 465 LYS C 431 REMARK 465 PHE C 432 REMARK 465 GLN C 433 REMARK 465 PHE C 434 REMARK 465 GLU C 435 REMARK 465 LEU C 436 REMARK 465 THR C 437 REMARK 465 LEU C 438 REMARK 465 SER D 413 REMARK 465 PRO D 414 REMARK 465 SER D 415 REMARK 465 PRO D 416 REMARK 465 ALA D 417 REMARK 465 PRO D 418 REMARK 465 ASP D 419 REMARK 465 ASP D 420 REMARK 465 PRO D 421 REMARK 465 GLU D 422 REMARK 465 GLU D 423 REMARK 465 GLY D 424 REMARK 465 ARG D 425 REMARK 465 GLN D 426 REMARK 465 GLY D 427 REMARK 465 GLN D 428 REMARK 465 THR D 429 REMARK 465 GLU D 430 REMARK 465 LYS D 431 REMARK 465 PHE D 432 REMARK 465 GLN D 433 REMARK 465 PHE D 434 REMARK 465 GLU D 435 REMARK 465 LEU D 436 REMARK 465 THR D 437 REMARK 465 LEU D 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 79 CA ILE A 79 CB 0.041 REMARK 500 LYS A 85 CB LYS A 85 CG -0.043 REMARK 500 MET A 147 SD MET A 147 CE -0.059 REMARK 500 MET A 277 SD MET A 277 CE 0.039 REMARK 500 VAL B 207 CA VAL B 207 CB 0.038 REMARK 500 GLU B 349 CB GLU B 349 CG -0.037 REMARK 500 MET C 147 SD MET C 147 CE 0.037 REMARK 500 GLU C 349 CB GLU C 349 CG -0.042 REMARK 500 MET D 222 CG MET D 222 SD 0.045 REMARK 500 CYS D 246 CB CYS D 246 SG -0.037 REMARK 500 MET D 277 CG MET D 277 SD 0.040 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 83 N - CA - C ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 138 C - N - CA ANGL. DEV. = -8.1 DEGREES REMARK 500 TYR A 153 N - CA - C ANGL. DEV. =-10.6 DEGREES REMARK 500 ALA A 158 N - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 HIS A 200 N - CA - C ANGL. DEV. = 8.9 DEGREES REMARK 500 ASN A 251 N - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 272 N - CA - C ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR A 375 N - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 391 N - CA - C ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR B 153 N - CA - C ANGL. DEV. =-11.9 DEGREES REMARK 500 HIS B 200 N - CA - C ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU B 252 N - CA - C ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 272 N - CA - C ANGL. DEV. = -6.7 DEGREES REMARK 500 PRO B 411 N - CA - C ANGL. DEV. = 10.7 DEGREES REMARK 500 TYR C 153 N - CA - C ANGL. DEV. =-12.1 DEGREES REMARK 500 HIS C 200 N - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP C 272 N - CA - C ANGL. DEV. = -7.2 DEGREES REMARK 500 THR C 289 N - CA - C ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG D 81 N - CA - C ANGL. DEV. = 7.0 DEGREES REMARK 500 GLN D 88 N - CA - C ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP D 102 N - CA - C ANGL. DEV. = -7.4 DEGREES REMARK 500 TYR D 153 N - CA - C ANGL. DEV. =-12.8 DEGREES REMARK 500 ALA D 158 N - CA - C ANGL. DEV. = 6.8 DEGREES REMARK 500 HIS D 200 N - CA - C ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP D 272 N - CA - C ANGL. DEV. = -7.4 DEGREES REMARK 500 SER D 295 N - CA - C ANGL. DEV. = -8.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 82 27.59 118.05 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PDE4D2 IN COMPLEX WITH (R,S)-ROLIPRAM DBREF 1OYM A 79 438 GB 2735859 AAC00070 79 438 DBREF 1OYM B 79 438 GB 2735859 AAC00070 79 438 DBREF 1OYM C 79 438 GB 2735859 AAC00070 79 438 DBREF 1OYM D 79 438 GB 2735859 AAC00070 79 438 SEQRES 1 A 360 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL SEQRES 2 A 360 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU SEQRES 3 A 360 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO SEQRES 4 A 360 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP SEQRES 5 A 360 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE SEQRES 6 A 360 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP SEQRES 7 A 360 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL SEQRES 8 A 360 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU SEQRES 9 A 360 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE SEQRES 10 A 360 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER SEQRES 11 A 360 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU SEQRES 12 A 360 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU SEQRES 13 A 360 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP SEQRES 14 A 360 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU SEQRES 15 A 360 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET SEQRES 16 A 360 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET SEQRES 17 A 360 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU SEQRES 18 A 360 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN SEQRES 19 A 360 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO SEQRES 20 A 360 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU SEQRES 21 A 360 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY SEQRES 22 A 360 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER SEQRES 23 A 360 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL SEQRES 24 A 360 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO SEQRES 25 A 360 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG SEQRES 26 A 360 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO SEQRES 27 A 360 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR SEQRES 28 A 360 GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 B 360 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL SEQRES 2 B 360 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU SEQRES 3 B 360 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO SEQRES 4 B 360 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP SEQRES 5 B 360 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE SEQRES 6 B 360 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP SEQRES 7 B 360 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL SEQRES 8 B 360 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU SEQRES 9 B 360 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE SEQRES 10 B 360 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER SEQRES 11 B 360 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU SEQRES 12 B 360 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU SEQRES 13 B 360 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP SEQRES 14 B 360 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU SEQRES 15 B 360 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET SEQRES 16 B 360 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET SEQRES 17 B 360 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU SEQRES 18 B 360 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN SEQRES 19 B 360 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO SEQRES 20 B 360 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU SEQRES 21 B 360 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY SEQRES 22 B 360 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER SEQRES 23 B 360 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL SEQRES 24 B 360 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO SEQRES 25 B 360 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG SEQRES 26 B 360 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO SEQRES 27 B 360 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR SEQRES 28 B 360 GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 C 360 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL SEQRES 2 C 360 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU SEQRES 3 C 360 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO SEQRES 4 C 360 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP SEQRES 5 C 360 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE SEQRES 6 C 360 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP SEQRES 7 C 360 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL SEQRES 8 C 360 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU SEQRES 9 C 360 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE SEQRES 10 C 360 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER SEQRES 11 C 360 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU SEQRES 12 C 360 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU SEQRES 13 C 360 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP SEQRES 14 C 360 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU SEQRES 15 C 360 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET SEQRES 16 C 360 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET SEQRES 17 C 360 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU SEQRES 18 C 360 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN SEQRES 19 C 360 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO SEQRES 20 C 360 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU SEQRES 21 C 360 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY SEQRES 22 C 360 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER SEQRES 23 C 360 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL SEQRES 24 C 360 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO SEQRES 25 C 360 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG SEQRES 26 C 360 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO SEQRES 27 C 360 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR SEQRES 28 C 360 GLU LYS PHE GLN PHE GLU LEU THR LEU SEQRES 1 D 360 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL SEQRES 2 D 360 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU SEQRES 3 D 360 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO SEQRES 4 D 360 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP SEQRES 5 D 360 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE SEQRES 6 D 360 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP SEQRES 7 D 360 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL SEQRES 8 D 360 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU SEQRES 9 D 360 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE SEQRES 10 D 360 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER SEQRES 11 D 360 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU SEQRES 12 D 360 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU SEQRES 13 D 360 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP SEQRES 14 D 360 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU SEQRES 15 D 360 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET SEQRES 16 D 360 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET SEQRES 17 D 360 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU SEQRES 18 D 360 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN SEQRES 19 D 360 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO SEQRES 20 D 360 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU SEQRES 21 D 360 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY SEQRES 22 D 360 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER SEQRES 23 D 360 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL SEQRES 24 D 360 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO SEQRES 25 D 360 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG SEQRES 26 D 360 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO SEQRES 27 D 360 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR SEQRES 28 D 360 GLU LYS PHE GLN PHE GLU LEU THR LEU HET ZN 501 1 HET ZN 502 1 HET ZN 503 1 HET ZN 504 1 HET ZN 505 1 HET ZN 506 1 HET ZN 507 1 HET ZN 508 1 HET ROL 201 20 HET ROL 202 20 HET ROL 203 20 HET ROL 204 20 HETNAM ZN ZINC ION HETNAM ROL ROLIPRAM HETSYN ROL (4R)-[3-(CYCLOPENTYLOXY)-4-METHOXYPHENYL]-2- HETSYN 2 ROL PYRROLIDINONE FORMUL 5 ZN 8(ZN 2+) FORMUL 13 ROL 4(C16 H21 N O3) FORMUL 17 HOH *166(H2 O1) HELIX 1 1 THR A 86 LEU A 96 1 11 HELIX 2 2 GLU A 97 VAL A 99 5 3 HELIX 3 3 HIS A 105 SER A 113 1 9 HELIX 4 4 ARG A 116 ARG A 129 1 14 HELIX 5 5 ASP A 130 PHE A 135 1 6 HELIX 6 6 PRO A 138 HIS A 152 1 15 HELIX 7 7 ASN A 161 SER A 177 1 17 HELIX 8 8 THR A 178 GLU A 182 5 5 HELIX 9 9 THR A 186 HIS A 200 1 15 HELIX 10 10 SER A 208 THR A 215 1 8 HELIX 11 11 SER A 217 TYR A 223 1 7 HELIX 12 12 SER A 227 LEU A 240 1 14 HELIX 13 13 LEU A 241 GLU A 243 5 3 HELIX 14 14 THR A 253 ALA A 270 1 18 HELIX 15 15 THR A 271 SER A 274 5 4 HELIX 16 16 LYS A 275 THR A 289 1 15 HELIX 17 17 ASN A 302 LEU A 319 1 18 HELIX 18 18 SER A 320 LYS A 324 5 5 HELIX 19 19 PRO A 325 ARG A 350 1 26 HELIX 20 20 SER A 364 ILE A 376 1 13 HELIX 21 21 ILE A 376 VAL A 388 1 13 HELIX 22 22 ALA A 392 SER A 408 1 17 HELIX 23 23 GLN B 88 LEU B 96 1 9 HELIX 24 24 GLU B 97 VAL B 99 5 3 HELIX 25 25 HIS B 105 SER B 113 1 9 HELIX 26 26 ARG B 116 ARG B 129 1 14 HELIX 27 27 ASP B 130 LYS B 136 1 7 HELIX 28 28 PRO B 138 HIS B 152 1 15 HELIX 29 29 ASN B 161 THR B 178 1 18 HELIX 30 30 PRO B 179 GLU B 182 5 4 HELIX 31 31 THR B 186 HIS B 200 1 15 HELIX 32 32 SER B 208 THR B 215 1 8 HELIX 33 33 SER B 217 TYR B 223 1 7 HELIX 34 34 SER B 227 LEU B 240 1 14 HELIX 35 35 LEU B 241 GLU B 243 5 3 HELIX 36 36 THR B 253 ALA B 270 1 18 HELIX 37 37 THR B 271 SER B 274 5 4 HELIX 38 38 LYS B 275 THR B 289 1 15 HELIX 39 39 ASN B 302 LEU B 319 1 18 HELIX 40 40 SER B 320 LYS B 324 5 5 HELIX 41 41 PRO B 325 ARG B 350 1 26 HELIX 42 42 SER B 364 ILE B 376 1 13 HELIX 43 43 ILE B 376 ASP B 386 1 11 HELIX 44 44 ALA B 392 SER B 408 1 17 HELIX 45 45 THR C 86 LEU C 96 1 11 HELIX 46 46 GLU C 97 VAL C 99 5 3 HELIX 47 47 HIS C 105 SER C 113 1 9 HELIX 48 48 ARG C 116 ARG C 129 1 14 HELIX 49 49 ASP C 130 PHE C 135 1 6 HELIX 50 50 PRO C 138 HIS C 152 1 15 HELIX 51 51 ASN C 161 SER C 177 1 17 HELIX 52 52 THR C 178 GLU C 182 5 5 HELIX 53 53 THR C 186 HIS C 200 1 15 HELIX 54 54 SER C 208 THR C 215 1 8 HELIX 55 55 SER C 217 TYR C 223 1 7 HELIX 56 56 SER C 227 LEU C 240 1 14 HELIX 57 57 LEU C 241 GLU C 243 5 3 HELIX 58 58 THR C 253 ALA C 270 1 18 HELIX 59 59 THR C 271 SER C 274 5 4 HELIX 60 60 LYS C 275 GLU C 288 1 14 HELIX 61 61 ASN C 302 LEU C 319 1 18 HELIX 62 62 SER C 320 LYS C 324 5 5 HELIX 63 63 PRO C 325 ARG C 350 1 26 HELIX 64 64 SER C 364 ILE C 376 1 13 HELIX 65 65 ILE C 376 ASP C 386 1 11 HELIX 66 66 ALA C 392 SER C 408 1 17 HELIX 67 67 GLN D 88 LEU D 96 1 9 HELIX 68 68 GLU D 97 LYS D 101 5 5 HELIX 69 69 HIS D 105 SER D 113 1 9 HELIX 70 70 ARG D 116 ARG D 129 1 14 HELIX 71 71 ASP D 130 PHE D 135 1 6 HELIX 72 72 PRO D 138 HIS D 152 1 15 HELIX 73 73 ASN D 161 SER D 177 1 17 HELIX 74 74 THR D 178 GLU D 182 5 5 HELIX 75 75 THR D 186 HIS D 200 1 15 HELIX 76 76 SER D 208 THR D 215 1 8 HELIX 77 77 SER D 217 TYR D 223 1 7 HELIX 78 78 SER D 227 LEU D 240 1 14 HELIX 79 79 LEU D 241 GLU D 243 5 3 HELIX 80 80 THR D 253 ALA D 270 1 18 HELIX 81 81 THR D 271 SER D 274 5 4 HELIX 82 82 LYS D 275 THR D 289 1 15 HELIX 83 83 ASN D 302 LEU D 319 1 18 HELIX 84 84 SER D 320 LYS D 324 5 5 HELIX 85 85 PRO D 325 ARG D 350 1 26 HELIX 86 86 ASP D 359 ALA D 363 5 5 HELIX 87 87 SER D 364 ILE D 376 1 13 HELIX 88 88 ILE D 376 VAL D 388 1 13 HELIX 89 89 ALA D 392 SER D 408 1 17 CISPEP 1 HIS A 389 PRO A 390 0 0.40 CISPEP 2 HIS B 389 PRO B 390 0 -0.38 CISPEP 3 HIS C 389 PRO C 390 0 0.04 CISPEP 4 HIS D 389 PRO D 390 0 -0.11 CRYST1 99.272 112.493 160.908 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006215 0.00000