HEADER TRANSCRIPTION 07-APR-03 1OZ2 TITLE CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR TITLE 2 (NATIVE-II) AT 1.55 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 197-527; COMPND 5 SYNONYM: L3, MBT-LIKE, L3, MBT PROTEIN HOMOLOG, H-L3, MBT PROTEIN, H- COMPND 6 L3, MBT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: L3MBTL OR L3MBT OR KIAA0681; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-DE(3)RP; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-3 KEYWDS PROPELLER, TRANSCRIPTION REPRESSOR, THREE MALIGNANT BRAIN TUMOR KEYWDS 2 REPEATS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.K.WANG,V.TERESHKO,P.BOCCUNI,D.MACGROGAN,S.D.NIMER,D.J.PATEL REVDAT 4 16-AUG-23 1OZ2 1 REMARK REVDAT 3 13-JUL-11 1OZ2 1 VERSN REVDAT 2 24-FEB-09 1OZ2 1 VERSN REVDAT 1 19-AUG-03 1OZ2 0 JRNL AUTH W.K.WANG,V.TERESHKO,P.BOCCUNI,D.MACGROGAN,S.D.NIMER, JRNL AUTH 2 D.J.PATEL JRNL TITL MALIGNANT BRAIN TUMOR REPEATS: A THREE-LEAVED PROPELLER JRNL TITL 2 ARCHITECTURE WITH LIGAND/PEPTIDE BINDING POCKETS. JRNL REF STRUCTURE V. 11 775 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12842041 JRNL DOI 10.1016/S0969-2126(03)00127-8 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.13 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 65305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2787 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2326 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3809 ; 1.643 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5467 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3056 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 567 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2659 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1407 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 1.143 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2652 ; 2.089 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 2.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 4.474 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6130 14.6620 18.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0017 REMARK 3 T33: 0.0812 T12: -0.0088 REMARK 3 T13: 0.0075 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6159 L22: 0.2996 REMARK 3 L33: 0.2467 L12: 0.0957 REMARK 3 L13: 0.1182 L23: 0.0799 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0068 S13: 0.0845 REMARK 3 S21: 0.0119 S22: -0.0172 S23: 0.0019 REMARK 3 S31: -0.0211 S32: 0.0095 S33: -0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, MES, DTT, AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.34000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY WITH THE SYMMETRY RELATED MOLECULE REMARK 300 IS GENERATED BY THE OPERATION: -X, -Y, Z; X+1/2, -Y+1/2, -Z; -X+1/2, REMARK 300 Y+1/2, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1228 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1229 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1240 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 197 REMARK 465 ALA A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 390 CB CYS A 390 SG -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 391 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 467 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 244 -169.19 -161.78 REMARK 500 HIS A 251 67.48 -151.50 REMARK 500 HIS A 331 22.63 -74.98 REMARK 500 GLN A 336 33.31 -148.51 REMARK 500 ASP A 372 -120.27 50.92 REMARK 500 PRO A 417 108.70 -54.82 REMARK 500 ASP A 418 65.29 76.32 REMARK 500 ASN A 452 -11.88 84.48 REMARK 500 LEU A 455 -169.07 -160.54 REMARK 500 ARG A 521 17.05 56.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 23 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 24 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN REMARK 900 TUMOR (SELENO-MET) AT 1.85 ANGSTROM REMARK 900 RELATED ID: 1OZ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN REMARK 900 TUMOR (NATIVE-I) AT 1.85 ANGSTROM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE SEQUENCE CONFLICTS (L320, R321 --> M320, C321) REMARK 999 AND (L332 --> M332) ARE NOTED IN THE SWISS-PROT REMARK 999 DATABASE ENTRY (ACCESSION Q9Y468). DBREF 1OZ2 A 197 527 UNP Q9Y468 LMBTL_HUMAN 197 527 SEQRES 1 A 331 PRO ALA THR GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SEQRES 2 A 331 SER TYR LEU GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SEQRES 3 A 331 SER LEU PHE GLN ASP SER GLN ALA VAL THR HIS ASN LYS SEQRES 4 A 331 ASN GLY PHE LYS LEU GLY MET LYS LEU GLU GLY ILE ASP SEQRES 5 A 331 PRO GLN HIS PRO SER MET TYR PHE ILE LEU THR VAL ALA SEQRES 6 A 331 GLU VAL CYS GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY SEQRES 7 A 331 TYR SER GLU CYS HIS ASP PHE TRP VAL ASN ALA ASN SER SEQRES 8 A 331 PRO ASP ILE HIS PRO ALA GLY TRP PHE GLU LYS THR GLY SEQRES 9 A 331 HIS LYS LEU GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU SEQRES 10 A 331 PHE SER TRP SER GLN TYR LEU ARG SER THR ARG ALA GLN SEQRES 11 A 331 ALA ALA PRO LYS HIS LEU PHE VAL SER GLN SER HIS SER SEQRES 12 A 331 PRO PRO PRO LEU GLY PHE GLN VAL GLY MET LYS LEU GLU SEQRES 13 A 331 ALA VAL ASP ARG MET ASN PRO SER LEU VAL CYS VAL ALA SEQRES 14 A 331 SER VAL THR ASP VAL VAL ASP SER ARG PHE LEU VAL HIS SEQRES 15 A 331 PHE ASP ASN TRP ASP ASP THR TYR ASP TYR TRP CYS ASP SEQRES 16 A 331 PRO SER SER PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN SEQRES 17 A 331 LYS GLN GLY LYS PRO LEU THR PRO PRO GLN ASP TYR PRO SEQRES 18 A 331 ASP PRO ASP ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU SEQRES 19 A 331 THR GLY ALA SER ALA VAL PRO THR TRP ALA PHE LYS VAL SEQRES 20 A 331 ARG PRO PRO HIS SER PHE LEU VAL ASN MET LYS LEU GLU SEQRES 21 A 331 ALA VAL ASP ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SEQRES 22 A 331 SER VAL GLU ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS SEQRES 23 A 331 PHE ASP GLY TRP SER HIS GLY TYR ASP PHE TRP ILE ASP SEQRES 24 A 331 ALA ASP HIS PRO ASP ILE HIS PRO ALA GLY TRP CYS SER SEQRES 25 A 331 LYS THR GLY HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG SEQRES 26 A 331 GLU PRO SER SER ALA SER HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 600 5 HET MES A 21 12 HET MES A 22 12 HET MES A 23 12 HET MES A 24 12 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 MES 4(C6 H13 N O4 S) FORMUL 10 HOH *505(H2 O) HELIX 1 1 SER A 207 LYS A 216 1 10 HELIX 2 2 PRO A 221 PHE A 225 5 5 HELIX 3 3 GLN A 226 VAL A 231 1 6 HELIX 4 4 SER A 276 ASP A 280 5 5 HELIX 5 5 GLY A 294 GLY A 300 1 7 HELIX 6 6 LYS A 310 PHE A 314 5 5 HELIX 7 7 SER A 315 ARG A 324 1 10 HELIX 8 8 PRO A 329 PHE A 333 5 5 HELIX 9 9 ASP A 383 ASP A 387 5 5 HELIX 10 10 GLY A 401 GLY A 407 1 7 HELIX 11 11 ASP A 418 PHE A 422 5 5 HELIX 12 12 CYS A 423 GLY A 432 1 10 HELIX 13 13 PRO A 437 PHE A 441 5 5 HELIX 14 14 SER A 487 ASP A 491 5 5 HELIX 15 15 GLY A 505 GLY A 511 1 7 SHEET 1 A 5 PHE A 281 ASN A 284 0 SHEET 2 A 5 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 A 5 HIS A 251 CYS A 264 -1 N THR A 259 O HIS A 271 SHEET 4 A 5 LYS A 243 ASP A 248 -1 N GLY A 246 O PHE A 256 SHEET 5 A 5 ILE A 290 HIS A 291 -1 O HIS A 291 N GLU A 245 SHEET 1 B 4 PHE A 281 ASN A 284 0 SHEET 2 B 4 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 B 4 HIS A 251 CYS A 264 -1 N THR A 259 O HIS A 271 SHEET 4 B 4 LEU A 303 GLN A 304 1 O GLN A 304 N TYR A 255 SHEET 1 C 5 TYR A 388 CYS A 390 0 SHEET 2 C 5 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 C 5 VAL A 362 VAL A 371 -1 N ASP A 369 O LEU A 376 SHEET 4 C 5 LYS A 350 VAL A 354 -1 N ALA A 353 O CYS A 363 SHEET 5 C 5 ILE A 397 HIS A 398 -1 O HIS A 398 N GLU A 352 SHEET 1 D 4 TYR A 388 CYS A 390 0 SHEET 2 D 4 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 D 4 VAL A 362 VAL A 371 -1 N ASP A 369 O LEU A 376 SHEET 4 D 4 LEU A 410 THR A 411 1 O THR A 411 N VAL A 362 SHEET 1 E 5 PHE A 492 ASP A 495 0 SHEET 2 E 5 ARG A 478 PHE A 483 -1 N ILE A 481 O PHE A 492 SHEET 3 E 5 ILE A 466 VAL A 474 -1 N ASP A 473 O LYS A 480 SHEET 4 E 5 LYS A 454 VAL A 458 -1 N LEU A 455 O ALA A 469 SHEET 5 E 5 ILE A 501 HIS A 502 -1 O HIS A 502 N GLU A 456 SITE 1 AC1 9 SER A 207 TRP A 208 ARG A 321 SER A 508 SITE 2 AC1 9 HOH A 614 HOH A 668 HOH A 681 HOH A 861 SITE 3 AC1 9 HOH A1019 SITE 1 AC2 3 ARG A 460 HIS A 498 HOH A 968 SITE 1 AC3 6 HIS A 378 ASP A 380 ASN A 381 HOH A 965 SITE 2 AC3 6 HOH A1043 HOH A1241 SITE 1 AC4 5 HIS A 271 ASP A 273 GLY A 274 TYR A 275 SITE 2 AC4 5 HOH A 810 SITE 1 AC5 8 ASP A 355 ASN A 358 CYS A 363 PHE A 379 SITE 2 AC5 8 TRP A 382 TYR A 386 LYS A 480 HOH A 705 SITE 1 AC6 9 TRP A 382 ASP A 383 TYR A 386 GLN A 414 SITE 2 AC6 9 VAL A 451 ASN A 452 GLU A 472 HIS A 488 SITE 3 AC6 9 HOH A 970 SITE 1 AC7 8 CYS A 278 ASP A 459 ARG A 461 PHE A 483 SITE 2 AC7 8 TRP A 486 TYR A 490 HOH A 812 HOH A 982 SITE 1 AC8 6 CYS A 205 TRP A 206 SER A 207 SER A 210 SITE 2 AC8 6 TYR A 211 GLU A 214 CRYST1 86.680 93.403 58.578 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017071 0.00000