HEADER    DNA                                     08-APR-03   1OZ8              
TITLE     INTRAMOLECULAR HIGHER-ORDER PACKING OF PARALLEL QUADRUPLEXES          
TITLE    2 COMPRISING A G:G:G:G TETRAD AND A G(:A):G(:A):G(:A):G HEPTAD OF GGA  
TITLE    3 TRIPLET REPEAT DNA                                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP
COMPND   3 *GP*GP*AP*GP*GP*A)-3';                                               
COMPND   4 CHAIN: A;                                                            
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES                                                       
KEYWDS    INTRAMOLECULAR PACKING OF PARALLEL QUADRUPLEXES, DNA                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    A.MATSUGAMI,T.OKUIZUMI,S.UESUGI,M.KATAHIRA                            
REVDAT   4   29-MAY-24 1OZ8    1       REMARK                                   
REVDAT   3   23-FEB-22 1OZ8    1       REMARK                                   
REVDAT   2   24-FEB-09 1OZ8    1       VERSN                                    
REVDAT   1   08-APR-04 1OZ8    0                                                
JRNL        AUTH   A.MATSUGAMI,T.OKUIZUMI,S.UESUGI,M.KATAHIRA                   
JRNL        TITL   INTRAMOLECULAR HIGHER ORDER PACKING OF PARALLEL QUADRUPLEXES 
JRNL        TITL 2 COMPRISING A G:G:G:G TETRAD AND A G(:A):G(:A):G(:A):G HEPTAD 
JRNL        TITL 3 OF GGA TRIPLET REPEAT DNA                                    
JRNL        REF    J.BIOL.CHEM.                  V. 278 28147 2003              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   12748183                                                     
JRNL        DOI    10.1074/JBC.M303694200                                       
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   A.MATSUGAMI,K.OUHASHI,M.KANAGAWA,H.LIU,S.KANAGAWA,S.UESUGI,  
REMARK   1  AUTH 2 M.KATAHIRA                                                   
REMARK   1  TITL   AN INTRAMOLECULAR QUADRUPLEX OF (GGA)(4) TRIPLET REPEAT DNA  
REMARK   1  TITL 2 WITH A G:G:G:G TETRAD AND A G(:A):G(:A):G(:A):G HEPTAD, AND  
REMARK   1  TITL 3 ITS DIMERIC INTERACTION                                      
REMARK   1  REF    J.MOL.BIOL.                   V. 313   255 2001              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  PMID   11800555                                                     
REMARK   1  DOI    10.1006/JMBI.2001.5047                                       
REMARK   1 REFERENCE 2                                                          
REMARK   1  AUTH   H.LIU,A.MATSUGAMI,M.KATAHIRA,S.UESUGI                        
REMARK   1  TITL   A DIMERIC RNA QUADRUPLEX ARCHITECTURE COMPRISED OF TWO       
REMARK   1  TITL 2 G:G(:A):G:G(:A) HEXADS, G:G:G:G TETRADS AND UUUU LOOPS       
REMARK   1  REF    J.MOL.BIOL.                   V. 322   955 2002              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  PMID   12367521                                                     
REMARK   1  DOI    10.1016/S0022-2836(02)00876-8                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.851, X-PLOR 3.851                           
REMARK   3   AUTHORS     : BRUNGER (X-PLOR), BRUNGER (X-PLOR)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1OZ8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000018828.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 275; 298                           
REMARK 210  PH                             : 6.5; 6.5                           
REMARK 210  IONIC STRENGTH                 : NULL; NULL                         
REMARK 210  PRESSURE                       : AMBIENT; AMBIENT                   
REMARK 210  SAMPLE CONTENTS                : 1MM DNA; 10MM SODIUM PHOSPHATE     
REMARK 210                                   BUFFER; 30MM KCL; 1MM DNA; 10MM    
REMARK 210                                   SODIUM PHOSPHATE BUFFER; 30MM KCL  
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 2D TOCSY; DQF-COSY       
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   H4'   DG A    11     O4'   DA A    12              1.44            
REMARK 500   H61   DA A     9     O4'   DG A    16              1.50            
REMARK 500   O4'   DG A    10     H61   DA A    15              1.54            
REMARK 500   H21   DG A    19     N7    DG A    22              1.56            
REMARK 500   H21   DG A    17     N7    DG A    20              1.57            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1  DG A   1   O4' -  C1' -  N9  ANGL. DEV. =   3.4 DEGREES          
REMARK 500  1  DG A   1   N7  -  C8  -  N9  ANGL. DEV. =   4.7 DEGREES          
REMARK 500  1  DG A   1   C8  -  N9  -  C4  ANGL. DEV. =  -2.4 DEGREES          
REMARK 500  1  DG A   2   O4' -  C1' -  N9  ANGL. DEV. =   2.9 DEGREES          
REMARK 500  1  DG A   2   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DG A   2   C8  -  N9  -  C4  ANGL. DEV. =  -2.5 DEGREES          
REMARK 500  1  DA A   3   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DG A   4   O4' -  C1' -  N9  ANGL. DEV. =   2.8 DEGREES          
REMARK 500  1  DG A   4   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DG A   4   C8  -  N9  -  C4  ANGL. DEV. =  -2.6 DEGREES          
REMARK 500  1  DG A   5   O4' -  C1' -  N9  ANGL. DEV. =   2.4 DEGREES          
REMARK 500  1  DG A   5   N7  -  C8  -  N9  ANGL. DEV. =   4.4 DEGREES          
REMARK 500  1  DA A   6   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DA A   6   C8  -  N9  -  C4  ANGL. DEV. =  -2.5 DEGREES          
REMARK 500  1  DG A   7   O4' -  C1' -  N9  ANGL. DEV. =   3.0 DEGREES          
REMARK 500  1  DG A   7   N7  -  C8  -  N9  ANGL. DEV. =   4.4 DEGREES          
REMARK 500  1  DG A   7   C8  -  N9  -  C4  ANGL. DEV. =  -2.6 DEGREES          
REMARK 500  1  DG A   8   O4' -  C1' -  N9  ANGL. DEV. =   3.1 DEGREES          
REMARK 500  1  DG A   8   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DA A   9   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DA A   9   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DG A  10   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500  1  DG A  10   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DG A  10   C8  -  N9  -  C4  ANGL. DEV. =  -2.6 DEGREES          
REMARK 500  1  DG A  11   O4' -  C1' -  N9  ANGL. DEV. =   3.1 DEGREES          
REMARK 500  1  DG A  11   N7  -  C8  -  N9  ANGL. DEV. =   4.7 DEGREES          
REMARK 500  1  DA A  12   N7  -  C8  -  N9  ANGL. DEV. =   3.9 DEGREES          
REMARK 500  1  DG A  13   O4' -  C1' -  N9  ANGL. DEV. =   2.5 DEGREES          
REMARK 500  1  DG A  13   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DG A  13   C8  -  N9  -  C4  ANGL. DEV. =  -2.7 DEGREES          
REMARK 500  1  DG A  14   O4' -  C1' -  N9  ANGL. DEV. =   3.4 DEGREES          
REMARK 500  1  DG A  14   N7  -  C8  -  N9  ANGL. DEV. =   4.6 DEGREES          
REMARK 500  1  DA A  15   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500  1  DA A  15   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DA A  15   C8  -  N9  -  C4  ANGL. DEV. =  -2.4 DEGREES          
REMARK 500  1  DG A  16   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DG A  16   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500  1  DG A  16   C8  -  N9  -  C4  ANGL. DEV. =  -2.7 DEGREES          
REMARK 500  1  DG A  17   O4' -  C1' -  N9  ANGL. DEV. =   3.6 DEGREES          
REMARK 500  1  DG A  17   N7  -  C8  -  N9  ANGL. DEV. =   4.6 DEGREES          
REMARK 500  1  DA A  18   O4' -  C1' -  N9  ANGL. DEV. =   2.0 DEGREES          
REMARK 500  1  DA A  18   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DG A  19   O4' -  C1' -  N9  ANGL. DEV. =   3.1 DEGREES          
REMARK 500  1  DG A  19   N7  -  C8  -  N9  ANGL. DEV. =   4.3 DEGREES          
REMARK 500  1  DG A  19   C8  -  N9  -  C4  ANGL. DEV. =  -2.5 DEGREES          
REMARK 500  1  DG A  20   O4' -  C1' -  N9  ANGL. DEV. =   3.5 DEGREES          
REMARK 500  1  DG A  20   N7  -  C8  -  N9  ANGL. DEV. =   4.6 DEGREES          
REMARK 500  1  DA A  21   N7  -  C8  -  N9  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DG A  22   O4' -  C1' -  N9  ANGL. DEV. =   2.7 DEGREES          
REMARK 500  1  DG A  22   N7  -  C8  -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS    1126 ANGLE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1OZ8 A    1    24  PDB    1OZ8     1OZ8             1     24             
SEQRES   1 A   24   DG  DG  DA  DG  DG  DA  DG  DG  DA  DG  DG  DA  DG          
SEQRES   2 A   24   DG  DA  DG  DG  DA  DG  DG  DA  DG  DG  DA                  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1