HEADER HYDROLASE 09-APR-03 1OZI TITLE THE ALTERNATIVELY SPLICED PDZ2 DOMAIN OF PTP-BL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ2 OF PTP-BL; COMPND 5 SYNONYM: NONRECEPTOR-TYPE, 13, PROTEIN-TYROSINE PHOSPHATASE RIP, COMPND 6 PHOSPHOPROTEIN PHOSPHATASE, PROTEIN-TYROSINE-PHOSPHATASE, COMPND 7 PHOSPHOTYROSINE PHOSPHATASE, PTPASE, PTP36, BAS-LIKE; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: LONGER ALTERNATIVE SPLICE VARIANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PTP-BL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ESCHERICHIA COLI BL21 CODON PLUS (DE3) RIL SOURCE 9 COMPETENT; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS ALL-BETA PROTEIN, PDZ DOMAIN, INTERACTION WITH C-TERMINI, APC, KEYWDS 2 ADENOMATOUS POLYPOSIS COLI, RIL, REVERSION INDUCED LIM, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR T.WALMA,J.AELEN,M.OOSTENDORP,L.VAN DEN BERK,W.HENDRIKS,G.W.VUISTER REVDAT 3 23-FEB-22 1OZI 1 REMARK SEQADV REVDAT 2 24-FEB-09 1OZI 1 VERSN REVDAT 1 27-JAN-04 1OZI 0 JRNL AUTH T.WALMA,J.AELEN,S.B.NABUURS,M.OOSTENDORP,L.VAN DEN BERK, JRNL AUTH 2 W.HENDRIKS,G.W.VUISTER JRNL TITL A CLOSED BINDING POCKET AND GLOBAL DESTABILIZATION MODIFY JRNL TITL 2 THE BINDING PROPERTIES OF AN ALTERNATIVELY SPLICED FORM OF JRNL TITL 3 THE SECOND PDZ DOMAIN OF PTP-BL. JRNL REF STRUCTURE V. 12 11 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 14725761 JRNL DOI 10.1016/J.STR.2003.11.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR 3.851, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO ET AL. (NMRPIPE), BRUNGER (X-PLOR), REMARK 3 BRUNGER, NIH (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1459 RESTRAINTS: 1354 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 76 DIHEDRAL ANGLE RESTRAINTS, 29 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS REMARK 4 REMARK 4 1OZI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018838. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.4MM PDZ2_AS, 13C/15N LABELLED, REMARK 210 50MM POTASSIUM PHOSPHATE BUFFER, REMARK 210 50MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : CARTESIAN SPACE DISTANCE REMARK 210 GEOMETRY, RESTRAINED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 22 -68.80 -164.84 REMARK 500 1 SER A 24 -170.34 62.01 REMARK 500 1 LEU A 32 124.19 -170.82 REMARK 500 1 ASP A 34 99.36 -62.55 REMARK 500 1 ASN A 39 -30.93 -166.17 REMARK 500 1 PRO A 54 -110.19 -17.25 REMARK 500 1 LYS A 55 -67.06 70.69 REMARK 500 1 ALA A 57 -110.29 59.04 REMARK 500 1 LYS A 66 43.35 -79.76 REMARK 500 2 VAL A 31 -63.64 -94.04 REMARK 500 2 HIS A 44 132.38 77.30 REMARK 500 2 PRO A 54 -152.97 -56.40 REMARK 500 2 LYS A 55 -44.97 72.80 REMARK 500 2 ALA A 57 -99.48 71.27 REMARK 500 2 THR A 93 -177.81 -67.18 REMARK 500 2 VAL A 106 87.86 44.06 REMARK 500 3 THR A 21 -84.00 -90.36 REMARK 500 3 SER A 24 -109.94 76.69 REMARK 500 3 PHE A 33 13.89 -166.88 REMARK 500 3 ASP A 34 -80.58 -75.13 REMARK 500 3 LYS A 35 115.84 -169.89 REMARK 500 3 ASN A 39 164.78 70.05 REMARK 500 3 SER A 41 -90.22 -59.85 REMARK 500 3 HIS A 44 -102.14 53.63 REMARK 500 3 PRO A 54 -77.38 -59.47 REMARK 500 3 ALA A 57 -71.31 167.25 REMARK 500 3 ARG A 63 -58.87 -128.70 REMARK 500 4 PRO A 10 44.38 -70.10 REMARK 500 4 ASP A 22 -72.01 -105.75 REMARK 500 4 LYS A 35 -50.41 -170.94 REMARK 500 4 VAL A 38 -84.00 -78.80 REMARK 500 4 ASN A 39 -69.37 -122.13 REMARK 500 4 HIS A 44 -81.55 -151.25 REMARK 500 4 PRO A 54 78.55 -65.25 REMARK 500 4 ALA A 57 -103.48 69.79 REMARK 500 4 VAL A 106 80.00 52.02 REMARK 500 5 ASP A 22 -154.84 -111.65 REMARK 500 5 ASP A 34 90.83 -68.11 REMARK 500 5 ALA A 57 -86.02 37.66 REMARK 500 6 ASP A 22 -50.35 -170.20 REMARK 500 6 SER A 24 -160.15 69.10 REMARK 500 6 ALA A 57 -86.71 75.98 REMARK 500 6 ARG A 63 -39.19 -136.43 REMARK 500 7 SER A 24 -153.73 72.40 REMARK 500 7 VAL A 38 -63.72 -107.36 REMARK 500 7 ASN A 39 -77.08 63.39 REMARK 500 7 THR A 40 -20.54 165.84 REMARK 500 7 SER A 41 33.25 -80.46 REMARK 500 7 ARG A 43 75.08 -114.09 REMARK 500 7 ILE A 53 -89.38 -103.30 REMARK 500 REMARK 500 THIS ENTRY HAS 226 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 69 0.08 SIDE CHAIN REMARK 500 5 ARG A 91 0.08 SIDE CHAIN REMARK 500 6 ARG A 63 0.08 SIDE CHAIN REMARK 500 23 ARG A 63 0.07 SIDE CHAIN REMARK 500 24 ARG A 43 0.07 SIDE CHAIN REMARK 500 26 ARG A 91 0.09 SIDE CHAIN REMARK 500 29 ARG A 63 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5762 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT AND J COUPLING INFORMATION REMARK 900 RELATED ID: 1GM1 RELATED DB: PDB REMARK 900 PDZ2 OF PTP-BL REMARK 900 RELATED ID: 5131 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT AND J COUPLING INFORMATION FOR PDZ2 OF PTP-BL DBREF 1OZI A 9 107 UNP Q64512 PTN13_MOUSE 1351 1444 SEQADV 1OZI VAL A 31 UNP Q64512 INSERTION SEQADV 1OZI LEU A 32 UNP Q64512 INSERTION SEQADV 1OZI PHE A 33 UNP Q64512 INSERTION SEQADV 1OZI ASP A 34 UNP Q64512 INSERTION SEQADV 1OZI LYS A 35 UNP Q64512 INSERTION SEQRES 1 A 99 LYS PRO GLY ASP THR PHE GLU VAL GLU LEU ALA LYS THR SEQRES 2 A 99 ASP GLY SER LEU GLY ILE SER VAL THR VAL LEU PHE ASP SEQRES 3 A 99 LYS GLY GLY VAL ASN THR SER VAL ARG HIS GLY GLY ILE SEQRES 4 A 99 TYR VAL LYS ALA ILE ILE PRO LYS GLY ALA ALA GLU SER SEQRES 5 A 99 ASP GLY ARG ILE HIS LYS GLY ASP ARG VAL LEU ALA VAL SEQRES 6 A 99 ASN GLY VAL SER LEU GLU GLY ALA THR HIS LYS GLN ALA SEQRES 7 A 99 VAL GLU THR LEU ARG ASN THR GLY GLN VAL VAL HIS LEU SEQRES 8 A 99 LEU LEU GLU LYS GLY GLN VAL PRO HELIX 1 1 GLY A 56 GLY A 62 1 7 HELIX 2 2 THR A 82 THR A 93 1 12 SHEET 1 A 5 THR A 13 ALA A 19 0 SHEET 2 A 5 VAL A 96 GLU A 102 -1 O VAL A 97 N LEU A 18 SHEET 3 A 5 ARG A 69 VAL A 73 -1 N ARG A 69 O GLU A 102 SHEET 4 A 5 ILE A 47 ILE A 52 -1 N ILE A 47 O VAL A 70 SHEET 5 A 5 ILE A 27 THR A 30 -1 N THR A 30 O TYR A 48 SHEET 1 B 4 THR A 13 ALA A 19 0 SHEET 2 B 4 VAL A 96 GLU A 102 -1 O VAL A 97 N LEU A 18 SHEET 3 B 4 ARG A 69 VAL A 73 -1 N ARG A 69 O GLU A 102 SHEET 4 B 4 VAL A 76 SER A 77 -1 O VAL A 76 N VAL A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1