HEADER ISOMERASE 10-APR-03 1P0N TITLE IPP:DMAPP ISOMERASE TYPE II, FMN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IPP:DMAPP ISOMERASE TYPE II; COMPND 5 EC: 5.3.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TERPENE BIOSYNTHESIS, ISOPENTENYL DIPHOSPHATE, DIMETHYLALLYL KEYWDS 2 DIPHOSPHATE, ISOMERASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,J.KAISER,S.GERHARDT,W.EISENREICH,R.HUBER,A.BACHER, AUTHOR 2 F.ROHDICH REVDAT 4 25-OCT-23 1P0N 1 REMARK REVDAT 3 13-JUL-11 1P0N 1 VERSN REVDAT 2 24-FEB-09 1P0N 1 VERSN REVDAT 1 17-JUN-03 1P0N 0 JRNL AUTH S.STEINBACHER,J.KAISER,S.GERHARDT,W.EISENREICH,R.HUBER, JRNL AUTH 2 A.BACHER,F.ROHDICH JRNL TITL CRYSTAL STRUCTURE OF THE TYPE II ISOPENTENYL JRNL TITL 2 DIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE ISOMERASE FROM JRNL TITL 3 BACILLUS SUBTILIS JRNL REF J.MOL.BIOL. V. 329 973 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12798687 JRNL DOI 10.1016/S0022-2836(03)00527-8 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.38100 REMARK 3 B22 (A**2) : 4.38100 REMARK 3 B33 (A**2) : -8.76200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.288 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BOND DISTANCE OF SD-CE IN MET B 156 REMARK 3 IS SLIGHTLY LONG REMARK 4 REMARK 4 1P0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1P0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, PH 8.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.51350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.51350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.96950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.51350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.51350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.96950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 57.51350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.51350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 69.96950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 57.51350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 57.51350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 69.96950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -241.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 GLN A 9 REMARK 465 HIS A 10 REMARK 465 ILE A 11 REMARK 465 ASN A 12 REMARK 465 HIS A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 ILE A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 19 REMARK 465 LYS A 20 REMARK 465 ARG A 21 REMARK 465 VAL A 155 REMARK 465 MET A 156 REMARK 465 PRO A 157 REMARK 465 GLU A 158 REMARK 465 GLY A 159 REMARK 465 ASP A 160 REMARK 465 ARG A 161 REMARK 465 SER A 162 REMARK 465 TYR A 211 REMARK 465 GLY A 212 REMARK 465 GLY A 213 REMARK 465 THR A 214 REMARK 465 ASN A 215 REMARK 465 PHE A 216 REMARK 465 SER A 217 REMARK 465 LYS A 218 REMARK 465 ILE A 219 REMARK 465 GLU A 220 REMARK 465 ASN A 221 REMARK 465 LEU A 222 REMARK 465 ARG A 223 REMARK 465 ARG A 224 REMARK 465 GLN A 225 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 HIS B 10 REMARK 465 ILE B 11 REMARK 465 ASN B 12 REMARK 465 HIS B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 ILE B 17 REMARK 465 GLY B 18 REMARK 465 GLN B 19 REMARK 465 LYS B 20 REMARK 465 ARG B 21 REMARK 465 PRO B 157 REMARK 465 GLU B 158 REMARK 465 GLY B 159 REMARK 465 ASP B 160 REMARK 465 ARG B 161 REMARK 465 SER B 162 REMARK 465 TYR B 211 REMARK 465 GLY B 212 REMARK 465 GLY B 213 REMARK 465 THR B 214 REMARK 465 ASN B 215 REMARK 465 PHE B 216 REMARK 465 SER B 217 REMARK 465 LYS B 218 REMARK 465 ILE B 219 REMARK 465 GLU B 220 REMARK 465 ASN B 221 REMARK 465 LEU B 222 REMARK 465 ARG B 223 REMARK 465 ARG B 224 REMARK 465 GLN B 225 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 163 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 226 CB CG CD NE CZ NH1 NH2 REMARK 480 MET B 63 CB CG SD CE REMARK 480 PHE B 163 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 226 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 160.46 -45.53 REMARK 500 ASN A 149 57.12 166.49 REMARK 500 GLU A 153 20.48 -76.22 REMARK 500 ALA A 166 -60.08 -29.58 REMARK 500 LEU A 260 108.31 -47.01 REMARK 500 ASP A 262 -170.00 -162.55 REMARK 500 ALA A 280 -82.33 -124.01 REMARK 500 LEU B 35 66.25 -119.43 REMARK 500 ASN B 114 79.72 -118.97 REMARK 500 ASN B 149 64.74 -173.04 REMARK 500 VAL B 155 -70.23 -66.80 REMARK 500 SER B 233 50.41 -115.20 REMARK 500 ALA B 280 -85.79 -124.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 669 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 1669 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0K RELATED DB: PDB REMARK 900 1P0K CONTAINS THE SAME PROTEIN COMPLEXED WITH PO4 DBREF 1P0N A 1 349 UNP P50740 IDI2_BACSU 1 349 DBREF 1P0N B 1 349 UNP P50740 IDI2_BACSU 1 349 SEQRES 1 A 349 MET THR ARG ALA GLU ARG LYS ARG GLN HIS ILE ASN HIS SEQRES 2 A 349 ALA LEU SER ILE GLY GLN LYS ARG GLU THR GLY LEU ASP SEQRES 3 A 349 ASP ILE THR PHE VAL HIS VAL SER LEU PRO ASP LEU ALA SEQRES 4 A 349 LEU GLU GLN VAL ASP ILE SER THR LYS ILE GLY GLU LEU SEQRES 5 A 349 SER SER SER SER PRO ILE PHE ILE ASN ALA MET THR GLY SEQRES 6 A 349 GLY GLY GLY LYS LEU THR TYR GLU ILE ASN LYS SER LEU SEQRES 7 A 349 ALA ARG ALA ALA SER GLN ALA GLY ILE PRO LEU ALA VAL SEQRES 8 A 349 GLY SER GLN MET SER ALA LEU LYS ASP PRO SER GLU ARG SEQRES 9 A 349 LEU SER TYR GLU ILE VAL ARG LYS GLU ASN PRO ASN GLY SEQRES 10 A 349 LEU ILE PHE ALA ASN LEU GLY SER GLU ALA THR ALA ALA SEQRES 11 A 349 GLN ALA LYS GLU ALA VAL GLU MET ILE GLY ALA ASN ALA SEQRES 12 A 349 LEU GLN ILE HIS LEU ASN VAL ILE GLN GLU ILE VAL MET SEQRES 13 A 349 PRO GLU GLY ASP ARG SER PHE SER GLY ALA LEU LYS ARG SEQRES 14 A 349 ILE GLU GLN ILE CYS SER ARG VAL SER VAL PRO VAL ILE SEQRES 15 A 349 VAL LYS GLU VAL GLY PHE GLY MET SER LYS ALA SER ALA SEQRES 16 A 349 GLY LYS LEU TYR GLU ALA GLY ALA ALA ALA VAL ASP ILE SEQRES 17 A 349 GLY GLY TYR GLY GLY THR ASN PHE SER LYS ILE GLU ASN SEQRES 18 A 349 LEU ARG ARG GLN ARG GLN ILE SER PHE PHE ASN SER TRP SEQRES 19 A 349 GLY ILE SER THR ALA ALA SER LEU ALA GLU ILE ARG SER SEQRES 20 A 349 GLU PHE PRO ALA SER THR MET ILE ALA SER GLY GLY LEU SEQRES 21 A 349 GLN ASP ALA LEU ASP VAL ALA LYS ALA ILE ALA LEU GLY SEQRES 22 A 349 ALA SER CYS THR GLY MET ALA GLY HIS PHE LEU LYS ALA SEQRES 23 A 349 LEU THR ASP SER GLY GLU GLU GLY LEU LEU GLU GLU ILE SEQRES 24 A 349 GLN LEU ILE LEU GLU GLU LEU LYS LEU ILE MET THR VAL SEQRES 25 A 349 LEU GLY ALA ARG THR ILE ALA ASP LEU GLN LYS ALA PRO SEQRES 26 A 349 LEU VAL ILE LYS GLY GLU THR HIS HIS TRP LEU THR GLU SEQRES 27 A 349 ARG GLY VAL ASN THR SER SER TYR SER VAL ARG SEQRES 1 B 349 MET THR ARG ALA GLU ARG LYS ARG GLN HIS ILE ASN HIS SEQRES 2 B 349 ALA LEU SER ILE GLY GLN LYS ARG GLU THR GLY LEU ASP SEQRES 3 B 349 ASP ILE THR PHE VAL HIS VAL SER LEU PRO ASP LEU ALA SEQRES 4 B 349 LEU GLU GLN VAL ASP ILE SER THR LYS ILE GLY GLU LEU SEQRES 5 B 349 SER SER SER SER PRO ILE PHE ILE ASN ALA MET THR GLY SEQRES 6 B 349 GLY GLY GLY LYS LEU THR TYR GLU ILE ASN LYS SER LEU SEQRES 7 B 349 ALA ARG ALA ALA SER GLN ALA GLY ILE PRO LEU ALA VAL SEQRES 8 B 349 GLY SER GLN MET SER ALA LEU LYS ASP PRO SER GLU ARG SEQRES 9 B 349 LEU SER TYR GLU ILE VAL ARG LYS GLU ASN PRO ASN GLY SEQRES 10 B 349 LEU ILE PHE ALA ASN LEU GLY SER GLU ALA THR ALA ALA SEQRES 11 B 349 GLN ALA LYS GLU ALA VAL GLU MET ILE GLY ALA ASN ALA SEQRES 12 B 349 LEU GLN ILE HIS LEU ASN VAL ILE GLN GLU ILE VAL MET SEQRES 13 B 349 PRO GLU GLY ASP ARG SER PHE SER GLY ALA LEU LYS ARG SEQRES 14 B 349 ILE GLU GLN ILE CYS SER ARG VAL SER VAL PRO VAL ILE SEQRES 15 B 349 VAL LYS GLU VAL GLY PHE GLY MET SER LYS ALA SER ALA SEQRES 16 B 349 GLY LYS LEU TYR GLU ALA GLY ALA ALA ALA VAL ASP ILE SEQRES 17 B 349 GLY GLY TYR GLY GLY THR ASN PHE SER LYS ILE GLU ASN SEQRES 18 B 349 LEU ARG ARG GLN ARG GLN ILE SER PHE PHE ASN SER TRP SEQRES 19 B 349 GLY ILE SER THR ALA ALA SER LEU ALA GLU ILE ARG SER SEQRES 20 B 349 GLU PHE PRO ALA SER THR MET ILE ALA SER GLY GLY LEU SEQRES 21 B 349 GLN ASP ALA LEU ASP VAL ALA LYS ALA ILE ALA LEU GLY SEQRES 22 B 349 ALA SER CYS THR GLY MET ALA GLY HIS PHE LEU LYS ALA SEQRES 23 B 349 LEU THR ASP SER GLY GLU GLU GLY LEU LEU GLU GLU ILE SEQRES 24 B 349 GLN LEU ILE LEU GLU GLU LEU LYS LEU ILE MET THR VAL SEQRES 25 B 349 LEU GLY ALA ARG THR ILE ALA ASP LEU GLN LYS ALA PRO SEQRES 26 B 349 LEU VAL ILE LYS GLY GLU THR HIS HIS TRP LEU THR GLU SEQRES 27 B 349 ARG GLY VAL ASN THR SER SER TYR SER VAL ARG HET FMN A 669 31 HET FMN B1669 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) HELIX 1 1 GLY A 24 ASP A 26 5 3 HELIX 2 2 ALA A 39 VAL A 43 5 5 HELIX 3 3 GLY A 67 GLY A 86 1 20 HELIX 4 4 ASP A 100 ASN A 114 1 15 HELIX 5 5 THR A 128 GLY A 140 1 13 HELIX 6 6 GLY A 165 VAL A 177 1 13 HELIX 7 7 SER A 191 GLY A 202 1 12 HELIX 8 8 GLN A 227 ASN A 232 5 6 HELIX 9 9 SER A 237 PHE A 249 1 13 HELIX 10 10 ASP A 262 LEU A 272 1 11 HELIX 11 11 ALA A 280 GLY A 314 1 35 HELIX 12 12 THR A 317 GLN A 322 1 6 HELIX 13 13 LYS A 329 ARG A 339 1 11 HELIX 14 14 SER A 344 ARG A 349 1 6 HELIX 15 15 GLY B 24 ASP B 26 5 3 HELIX 16 16 ALA B 39 VAL B 43 5 5 HELIX 17 17 GLY B 67 GLY B 86 1 20 HELIX 18 18 GLN B 94 ASP B 100 1 7 HELIX 19 19 ARG B 104 ASN B 114 1 11 HELIX 20 20 THR B 128 GLY B 140 1 13 HELIX 21 21 ASN B 149 MET B 156 1 8 HELIX 22 22 GLY B 165 VAL B 177 1 13 HELIX 23 23 SER B 191 GLY B 202 1 12 HELIX 24 24 GLN B 227 ASN B 232 5 6 HELIX 25 25 SER B 237 PHE B 249 1 13 HELIX 26 26 ASP B 262 GLY B 273 1 12 HELIX 27 27 ALA B 280 GLY B 314 1 35 HELIX 28 28 THR B 317 GLN B 322 1 6 HELIX 29 29 LYS B 329 ARG B 339 1 11 HELIX 30 30 SER B 344 ARG B 349 1 6 SHEET 1 A 2 ILE A 28 PHE A 30 0 SHEET 2 A 2 LEU A 326 ILE A 328 -1 O VAL A 327 N THR A 29 SHEET 1 B 2 THR A 47 ILE A 49 0 SHEET 2 B 2 LEU A 52 SER A 54 -1 O SER A 54 N THR A 47 SHEET 1 C 9 ILE A 58 ASN A 61 0 SHEET 2 C 9 LEU A 89 ALA A 90 1 O ALA A 90 N ILE A 60 SHEET 3 C 9 ILE A 119 GLY A 124 1 O PHE A 120 N LEU A 89 SHEET 4 C 9 ALA A 143 LEU A 148 1 O GLN A 145 N ALA A 121 SHEET 5 C 9 VAL A 181 GLU A 185 1 O ILE A 182 N LEU A 144 SHEET 6 C 9 ALA A 205 ILE A 208 1 O ASP A 207 N VAL A 183 SHEET 7 C 9 THR A 253 SER A 257 1 O ILE A 255 N ILE A 208 SHEET 8 C 9 CYS A 276 MET A 279 1 O GLY A 278 N ALA A 256 SHEET 9 C 9 ILE A 58 ASN A 61 1 N PHE A 59 O MET A 279 SHEET 1 D 2 ILE B 28 PHE B 30 0 SHEET 2 D 2 LEU B 326 ILE B 328 -1 O VAL B 327 N THR B 29 SHEET 1 E 2 THR B 47 ILE B 49 0 SHEET 2 E 2 LEU B 52 SER B 54 -1 O SER B 54 N THR B 47 SHEET 1 F 9 ILE B 58 ASN B 61 0 SHEET 2 F 9 LEU B 89 ALA B 90 1 O ALA B 90 N ILE B 60 SHEET 3 F 9 ILE B 119 GLY B 124 1 O PHE B 120 N LEU B 89 SHEET 4 F 9 ALA B 143 LEU B 148 1 O GLN B 145 N ALA B 121 SHEET 5 F 9 VAL B 181 GLU B 185 1 O ILE B 182 N LEU B 144 SHEET 6 F 9 ALA B 205 ILE B 208 1 O ASP B 207 N VAL B 183 SHEET 7 F 9 MET B 254 SER B 257 1 O ILE B 255 N ILE B 208 SHEET 8 F 9 CYS B 276 MET B 279 1 O GLY B 278 N ALA B 256 SHEET 9 F 9 ILE B 58 ASN B 61 1 N PHE B 59 O THR B 277 SITE 1 AC1 13 ASN A 61 MET A 63 THR A 64 GLY A 92 SITE 2 AC1 13 SER A 93 ASN A 122 HIS A 147 LYS A 184 SITE 3 AC1 13 GLY A 258 GLY A 259 ALA A 280 GLY A 281 SITE 4 AC1 13 ASP B 289 SITE 1 AC2 12 THR B 64 GLY B 92 SER B 93 ASN B 122 SITE 2 AC2 12 HIS B 147 LYS B 184 VAL B 186 GLY B 258 SITE 3 AC2 12 GLY B 259 MET B 279 ALA B 280 GLY B 281 CRYST1 115.027 115.027 139.939 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007146 0.00000