HEADER ISOMERASE 12-APR-03 1P1F TITLE CRYSTAL STRUCTURE OF APO 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-3-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE, MYO-INOSITOL-1- COMPND 5 PHOSPHATE SYNTHASE, MI-1-P SYNTHASE, IPS; COMPND 6 EC: 5.5.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APO, ENZYME, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,J.H.GEIGER REVDAT 5 14-FEB-24 1P1F 1 REMARK REVDAT 4 18-MAR-20 1P1F 1 REMARK REVDAT 3 13-JUL-11 1P1F 1 VERSN REVDAT 2 24-FEB-09 1P1F 1 VERSN REVDAT 1 08-JUL-03 1P1F 0 JRNL AUTH X.JIN,J.H.GEIGER JRNL TITL STRUCTURES OF NAD(+)- AND NADH-BOUND 1-L-MYO-INOSITOL JRNL TITL 2 1-PHOSPHATE SYNTHASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 1154 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12832758 JRNL DOI 10.1107/S0907444903008205 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3408 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.90100 REMARK 3 B22 (A**2) : -13.51300 REMARK 3 B33 (A**2) : 8.61200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.71800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.394 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.77150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.53100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.77150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.53100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 352 REMARK 465 GLY A 353 REMARK 465 ASN A 354 REMARK 465 ASN A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 357 REMARK 465 TYR A 358 REMARK 465 ASN A 359 REMARK 465 LEU A 360 REMARK 465 SER A 361 REMARK 465 ALA A 362 REMARK 465 PRO A 363 REMARK 465 LYS A 364 REMARK 465 GLN A 365 REMARK 465 PHE A 366 REMARK 465 ARG A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 GLU A 370 REMARK 465 ILE A 371 REMARK 465 SER A 372 REMARK 465 LYS A 373 REMARK 465 SER A 374 REMARK 465 SER A 375 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 353 REMARK 465 ASN B 354 REMARK 465 ASN B 355 REMARK 465 ASP B 356 REMARK 465 GLY B 357 REMARK 465 TYR B 358 REMARK 465 ASN B 359 REMARK 465 LEU B 360 REMARK 465 SER B 361 REMARK 465 ALA B 362 REMARK 465 PRO B 363 REMARK 465 LYS B 364 REMARK 465 GLN B 365 REMARK 465 PHE B 366 REMARK 465 ARG B 367 REMARK 465 SER B 368 REMARK 465 LYS B 369 REMARK 465 GLU B 370 REMARK 465 ILE B 371 REMARK 465 SER B 372 REMARK 465 LYS B 373 REMARK 465 SER B 374 REMARK 465 SER B 375 REMARK 465 VAL B 467 REMARK 465 LYS B 468 REMARK 465 GLU B 469 REMARK 465 ASP B 470 REMARK 465 ALA B 471 REMARK 465 GLY B 472 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL B 55 CG2 VAL B 464 1.96 REMARK 500 O ASN B 501 N LEU B 503 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 516 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -168.07 -161.19 REMARK 500 PRO A 49 161.67 -47.60 REMARK 500 LYS A 61 87.51 -65.71 REMARK 500 ASN A 91 59.06 30.73 REMARK 500 ASP A 120 -161.38 -107.27 REMARK 500 ALA A 121 24.61 -61.46 REMARK 500 GLU A 122 28.94 -179.84 REMARK 500 ASP A 125 136.00 -29.31 REMARK 500 ASN A 140 3.56 -69.75 REMARK 500 SER A 145 -165.78 -164.92 REMARK 500 ASP A 148 136.96 -171.86 REMARK 500 ILE A 149 2.06 -68.31 REMARK 500 SER A 184 -152.37 -107.79 REMARK 500 PRO A 188 -56.50 -26.91 REMARK 500 ILE A 191 -110.41 -153.50 REMARK 500 ASN A 201 59.64 -143.33 REMARK 500 ASN A 204 76.92 -104.55 REMARK 500 LYS A 208 50.51 -97.04 REMARK 500 THR A 213 29.20 -78.62 REMARK 500 VAL A 257 -90.78 -88.72 REMARK 500 MET A 261 -78.67 -32.93 REMARK 500 GLU A 273 1.16 -60.52 REMARK 500 ASP A 319 135.69 -25.04 REMARK 500 ASP A 320 115.33 68.62 REMARK 500 SER A 323 -148.79 -64.70 REMARK 500 ASN A 350 142.20 -175.62 REMARK 500 ASP A 379 35.44 -77.96 REMARK 500 ILE A 380 -45.90 -141.02 REMARK 500 ASN A 384 106.37 -161.22 REMARK 500 CYS A 399 117.86 -176.39 REMARK 500 PRO A 407 -72.25 -47.27 REMARK 500 ASP A 410 8.20 -65.65 REMARK 500 CYS A 436 -175.13 -172.93 REMARK 500 LYS A 462 116.39 -167.43 REMARK 500 ASP A 470 84.11 55.63 REMARK 500 PRO A 479 -38.00 -21.21 REMARK 500 LEU A 481 86.88 -57.45 REMARK 500 GLU A 530 -37.71 -146.68 REMARK 500 VAL B 15 94.33 -66.62 REMARK 500 LYS B 22 -129.80 -101.88 REMARK 500 ASN B 34 -164.36 -163.72 REMARK 500 SER B 42 -11.39 -47.95 REMARK 500 TYR B 105 47.93 -109.06 REMARK 500 ASP B 148 135.31 -170.91 REMARK 500 LEU B 154 -4.57 -58.08 REMARK 500 ASP B 189 11.10 -63.76 REMARK 500 ALA B 192 99.85 -68.23 REMARK 500 ALA B 193 168.67 -30.87 REMARK 500 ALA B 199 108.49 -49.88 REMARK 500 ASN B 200 40.61 -158.13 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 539 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH A 553 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 556 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 5.98 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE REMARK 900 RELATED ID: 1P1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NAD+-BOUND 1L-MYO-INOSITOL 1-PHOSPHATE REMARK 900 SYNTHASE REMARK 900 RELATED ID: 1P1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE REMARK 900 COMPLEXED WITH NADH REMARK 900 RELATED ID: 1P1K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE REMARK 900 COMPLEXED WITH NADH AND EDTA REMARK 999 REMARK 999 THE DIFFERENCES BETWEEN THE AUTHORS' SEQUENCE AND THE DATABASE REMARK 999 REFERENCE SEQUENCE ARE KNOWN CONFLICTS AND HAVE BEEN DOCUMENTED REMARK 999 IN SWISS PROT ENTRY P11986. DBREF 1P1F A 1 533 UNP P11986 INO1_YEAST 1 536 DBREF 1P1F B 1 533 UNP P11986 INO1_YEAST 1 536 SEQADV 1P1F A UNP P11986 ARG 14 SEE REMARK 999 SEQADV 1P1F VAL A 14 UNP P11986 LEU 15 SEE REMARK 999 SEQADV 1P1F A UNP P11986 PHE 61 SEE REMARK 999 SEQADV 1P1F LEU A 60 UNP P11986 GLU 62 SEE REMARK 999 SEQADV 1P1F A UNP P11986 ALA 100 SEE REMARK 999 SEQADV 1P1F GLU A 98 UNP P11986 LYS 101 SEE REMARK 999 SEQADV 1P1F ASN A 140 UNP P11986 LYS 143 SEE REMARK 999 SEQADV 1P1F ASP A 141 UNP P11986 HIS 144 SEE REMARK 999 SEQADV 1P1F ASN A 201 UNP P11986 GLN 204 SEE REMARK 999 SEQADV 1P1F PRO A 444 UNP P11986 ALA 447 SEE REMARK 999 SEQADV 1P1F B UNP P11986 ARG 14 SEE REMARK 999 SEQADV 1P1F VAL B 14 UNP P11986 LEU 15 SEE REMARK 999 SEQADV 1P1F B UNP P11986 PHE 61 SEE REMARK 999 SEQADV 1P1F LEU B 60 UNP P11986 GLU 62 SEE REMARK 999 SEQADV 1P1F B UNP P11986 ALA 100 SEE REMARK 999 SEQADV 1P1F GLU B 98 UNP P11986 LYS 101 SEE REMARK 999 SEQADV 1P1F ASN B 140 UNP P11986 LYS 143 SEE REMARK 999 SEQADV 1P1F ASP B 141 UNP P11986 HIS 144 SEE REMARK 999 SEQADV 1P1F ASN B 201 UNP P11986 GLN 204 SEE REMARK 999 SEQADV 1P1F PRO B 444 UNP P11986 ALA 447 SEE REMARK 999 SEQRES 1 A 533 MET THR GLU ASP ASN ILE ALA PRO ILE THR SER VAL LYS SEQRES 2 A 533 VAL VAL THR ASP LYS CYS THR TYR LYS ASP ASN GLU LEU SEQRES 3 A 533 LEU THR LYS TYR SER TYR GLU ASN ALA VAL VAL THR LYS SEQRES 4 A 533 THR ALA SER GLY ARG PHE ASP VAL THR PRO THR VAL GLN SEQRES 5 A 533 ASP TYR VAL PHE LYS LEU ASP LEU LYS LYS PRO GLU LYS SEQRES 6 A 533 LEU GLY ILE MET LEU ILE GLY LEU GLY GLY ASN ASN GLY SEQRES 7 A 533 SER THR LEU VAL ALA SER VAL LEU ALA ASN LYS HIS ASN SEQRES 8 A 533 VAL GLU PHE GLN THR LYS GLU GLY VAL LYS GLN PRO ASN SEQRES 9 A 533 TYR PHE GLY SER MET THR GLN CYS SER THR LEU LYS LEU SEQRES 10 A 533 GLY ILE ASP ALA GLU GLY ASN ASP VAL TYR ALA PRO PHE SEQRES 11 A 533 ASN SER LEU LEU PRO MET VAL SER PRO ASN ASP PHE VAL SEQRES 12 A 533 VAL SER GLY TRP ASP ILE ASN ASN ALA ASP LEU TYR GLU SEQRES 13 A 533 ALA MET GLN ARG SER GLN VAL LEU GLU TYR ASP LEU GLN SEQRES 14 A 533 GLN ARG LEU LYS ALA LYS MET SER LEU VAL LYS PRO LEU SEQRES 15 A 533 PRO SER ILE TYR TYR PRO ASP PHE ILE ALA ALA ASN GLN SEQRES 16 A 533 ASP GLU ARG ALA ASN ASN CYS ILE ASN LEU ASP GLU LYS SEQRES 17 A 533 GLY ASN VAL THR THR ARG GLY LYS TRP THR HIS LEU GLN SEQRES 18 A 533 ARG ILE ARG ARG ASP ILE GLN ASN PHE LYS GLU GLU ASN SEQRES 19 A 533 ALA LEU ASP LYS VAL ILE VAL LEU TRP THR ALA ASN THR SEQRES 20 A 533 GLU ARG TYR VAL GLU VAL SER PRO GLY VAL ASN ASP THR SEQRES 21 A 533 MET GLU ASN LEU LEU GLN SER ILE LYS ASN ASP HIS GLU SEQRES 22 A 533 GLU ILE ALA PRO SER THR ILE PHE ALA ALA ALA SER ILE SEQRES 23 A 533 LEU GLU GLY VAL PRO TYR ILE ASN GLY SER PRO GLN ASN SEQRES 24 A 533 THR PHE VAL PRO GLY LEU VAL GLN LEU ALA GLU HIS GLU SEQRES 25 A 533 GLY THR PHE ILE ALA GLY ASP ASP LEU LYS SER GLY GLN SEQRES 26 A 533 THR LYS LEU LYS SER VAL LEU ALA GLN PHE LEU VAL ASP SEQRES 27 A 533 ALA GLY ILE LYS PRO VAL SER ILE ALA SER TYR ASN HIS SEQRES 28 A 533 LEU GLY ASN ASN ASP GLY TYR ASN LEU SER ALA PRO LYS SEQRES 29 A 533 GLN PHE ARG SER LYS GLU ILE SER LYS SER SER VAL ILE SEQRES 30 A 533 ASP ASP ILE ILE ALA SER ASN ASP ILE LEU TYR ASN ASP SEQRES 31 A 533 LYS LEU GLY LYS LYS VAL ASP HIS CYS ILE VAL ILE LYS SEQRES 32 A 533 TYR MET LYS PRO VAL GLY ASP SER LYS VAL ALA MET ASP SEQRES 33 A 533 GLU TYR TYR SER GLU LEU MET LEU GLY GLY HIS ASN ARG SEQRES 34 A 533 ILE SER ILE HIS ASN VAL CYS GLU ASP SER LEU LEU ALA SEQRES 35 A 533 THR PRO LEU ILE ILE ASP LEU LEU VAL MET THR GLU PHE SEQRES 36 A 533 CYS THR ARG VAL SER TYR LYS LYS VAL ASP PRO VAL LYS SEQRES 37 A 533 GLU ASP ALA GLY LYS PHE GLU ASN PHE TYR PRO VAL LEU SEQRES 38 A 533 THR PHE LEU SER TYR TRP LEU LYS ALA PRO LEU THR ARG SEQRES 39 A 533 PRO GLY PHE HIS PRO VAL ASN GLY LEU ASN LYS GLN ARG SEQRES 40 A 533 THR ALA LEU GLU ASN PHE LEU ARG LEU LEU ILE GLY LEU SEQRES 41 A 533 PRO SER GLN ASN GLU LEU ARG PHE GLU GLU ARG LEU LEU SEQRES 1 B 533 MET THR GLU ASP ASN ILE ALA PRO ILE THR SER VAL LYS SEQRES 2 B 533 VAL VAL THR ASP LYS CYS THR TYR LYS ASP ASN GLU LEU SEQRES 3 B 533 LEU THR LYS TYR SER TYR GLU ASN ALA VAL VAL THR LYS SEQRES 4 B 533 THR ALA SER GLY ARG PHE ASP VAL THR PRO THR VAL GLN SEQRES 5 B 533 ASP TYR VAL PHE LYS LEU ASP LEU LYS LYS PRO GLU LYS SEQRES 6 B 533 LEU GLY ILE MET LEU ILE GLY LEU GLY GLY ASN ASN GLY SEQRES 7 B 533 SER THR LEU VAL ALA SER VAL LEU ALA ASN LYS HIS ASN SEQRES 8 B 533 VAL GLU PHE GLN THR LYS GLU GLY VAL LYS GLN PRO ASN SEQRES 9 B 533 TYR PHE GLY SER MET THR GLN CYS SER THR LEU LYS LEU SEQRES 10 B 533 GLY ILE ASP ALA GLU GLY ASN ASP VAL TYR ALA PRO PHE SEQRES 11 B 533 ASN SER LEU LEU PRO MET VAL SER PRO ASN ASP PHE VAL SEQRES 12 B 533 VAL SER GLY TRP ASP ILE ASN ASN ALA ASP LEU TYR GLU SEQRES 13 B 533 ALA MET GLN ARG SER GLN VAL LEU GLU TYR ASP LEU GLN SEQRES 14 B 533 GLN ARG LEU LYS ALA LYS MET SER LEU VAL LYS PRO LEU SEQRES 15 B 533 PRO SER ILE TYR TYR PRO ASP PHE ILE ALA ALA ASN GLN SEQRES 16 B 533 ASP GLU ARG ALA ASN ASN CYS ILE ASN LEU ASP GLU LYS SEQRES 17 B 533 GLY ASN VAL THR THR ARG GLY LYS TRP THR HIS LEU GLN SEQRES 18 B 533 ARG ILE ARG ARG ASP ILE GLN ASN PHE LYS GLU GLU ASN SEQRES 19 B 533 ALA LEU ASP LYS VAL ILE VAL LEU TRP THR ALA ASN THR SEQRES 20 B 533 GLU ARG TYR VAL GLU VAL SER PRO GLY VAL ASN ASP THR SEQRES 21 B 533 MET GLU ASN LEU LEU GLN SER ILE LYS ASN ASP HIS GLU SEQRES 22 B 533 GLU ILE ALA PRO SER THR ILE PHE ALA ALA ALA SER ILE SEQRES 23 B 533 LEU GLU GLY VAL PRO TYR ILE ASN GLY SER PRO GLN ASN SEQRES 24 B 533 THR PHE VAL PRO GLY LEU VAL GLN LEU ALA GLU HIS GLU SEQRES 25 B 533 GLY THR PHE ILE ALA GLY ASP ASP LEU LYS SER GLY GLN SEQRES 26 B 533 THR LYS LEU LYS SER VAL LEU ALA GLN PHE LEU VAL ASP SEQRES 27 B 533 ALA GLY ILE LYS PRO VAL SER ILE ALA SER TYR ASN HIS SEQRES 28 B 533 LEU GLY ASN ASN ASP GLY TYR ASN LEU SER ALA PRO LYS SEQRES 29 B 533 GLN PHE ARG SER LYS GLU ILE SER LYS SER SER VAL ILE SEQRES 30 B 533 ASP ASP ILE ILE ALA SER ASN ASP ILE LEU TYR ASN ASP SEQRES 31 B 533 LYS LEU GLY LYS LYS VAL ASP HIS CYS ILE VAL ILE LYS SEQRES 32 B 533 TYR MET LYS PRO VAL GLY ASP SER LYS VAL ALA MET ASP SEQRES 33 B 533 GLU TYR TYR SER GLU LEU MET LEU GLY GLY HIS ASN ARG SEQRES 34 B 533 ILE SER ILE HIS ASN VAL CYS GLU ASP SER LEU LEU ALA SEQRES 35 B 533 THR PRO LEU ILE ILE ASP LEU LEU VAL MET THR GLU PHE SEQRES 36 B 533 CYS THR ARG VAL SER TYR LYS LYS VAL ASP PRO VAL LYS SEQRES 37 B 533 GLU ASP ALA GLY LYS PHE GLU ASN PHE TYR PRO VAL LEU SEQRES 38 B 533 THR PHE LEU SER TYR TRP LEU LYS ALA PRO LEU THR ARG SEQRES 39 B 533 PRO GLY PHE HIS PRO VAL ASN GLY LEU ASN LYS GLN ARG SEQRES 40 B 533 THR ALA LEU GLU ASN PHE LEU ARG LEU LEU ILE GLY LEU SEQRES 41 B 533 PRO SER GLN ASN GLU LEU ARG PHE GLU GLU ARG LEU LEU FORMUL 3 HOH *133(H2 O) HELIX 1 1 GLY A 75 HIS A 90 1 16 HELIX 2 2 SER A 108 SER A 113 1 6 HELIX 3 3 ASN A 131 LEU A 133 5 3 HELIX 4 4 SER A 138 ASN A 140 5 3 HELIX 5 5 ASP A 153 GLN A 162 1 10 HELIX 6 6 GLU A 165 LEU A 178 1 14 HELIX 7 7 TYR A 187 ILE A 191 5 5 HELIX 8 8 GLY A 215 ALA A 235 1 21 HELIX 9 9 THR A 260 ASN A 270 1 11 HELIX 10 10 ALA A 276 GLU A 288 1 13 HELIX 11 11 VAL A 302 GLY A 313 1 12 HELIX 12 12 SER A 323 LEU A 328 1 6 HELIX 13 13 LEU A 328 ASP A 338 1 11 HELIX 14 14 ILE A 377 ALA A 382 1 6 HELIX 15 15 MET A 423 GLY A 425 5 3 HELIX 16 16 GLU A 437 THR A 457 1 21 HELIX 17 17 LEU A 481 LEU A 488 5 8 HELIX 18 18 GLY A 502 ILE A 518 1 17 HELIX 19 19 ARG A 527 LEU A 532 1 6 HELIX 20 20 GLY B 75 HIS B 90 1 16 HELIX 21 21 SER B 108 SER B 113 1 6 HELIX 22 22 ASN B 131 LEU B 133 5 3 HELIX 23 23 SER B 138 ASN B 140 5 3 HELIX 24 24 ASP B 153 GLN B 162 1 10 HELIX 25 25 GLU B 165 SER B 177 1 13 HELIX 26 26 TYR B 187 ILE B 191 5 5 HELIX 27 27 GLY B 215 ALA B 235 1 21 HELIX 28 28 THR B 260 ASP B 271 1 12 HELIX 29 29 ALA B 276 LEU B 287 1 12 HELIX 30 30 VAL B 302 GLY B 313 1 12 HELIX 31 31 SER B 323 GLY B 340 1 18 HELIX 32 32 ILE B 377 ASN B 384 1 8 HELIX 33 33 ASP B 438 ARG B 458 1 21 HELIX 34 34 LEU B 484 LEU B 488 5 5 HELIX 35 35 LEU B 503 ILE B 518 1 16 HELIX 36 36 ARG B 527 LEU B 532 1 6 SHEET 1 A 3 ALA B 35 THR B 40 0 SHEET 2 A 3 ARG B 44 PRO B 49 -1 O ARG B 44 N THR B 40 SHEET 3 A 3 SER A 11 VAL A 14 1 O SER A 11 N PHE B 45 SHEET 1 B 9 CYS A 19 TYR A 21 0 SHEET 2 B 9 GLU A 25 THR A 38 -1 O LEU A 27 N THR A 20 SHEET 3 B 9 ARG A 44 ASP A 59 -1 N ASP A 46 O THR A 38 SHEET 4 B 9 SER B 11 VAL B 14 1 O SER B 11 N PHE A 45 SHEET 5 B 9 ARG A 44 ASP A 59 1 N PHE A 45 O SER B 11 SHEET 6 B 9 LYS A 463 VAL A 464 -1 N VAL A 464 O ASP A 53 SHEET 7 B 9 ARG A 44 ASP A 59 -1 O ASP A 53 N VAL A 464 SHEET 8 B 9 VAL A 459 TYR A 461 -1 O SER A 460 N LYS A 57 SHEET 9 B 9 GLU A 475 ASN A 476 -1 N GLU A 475 O TYR A 461 SHEET 1 C 5 PHE A 142 TRP A 147 0 SHEET 2 C 5 LEU A 66 ILE A 71 1 O LEU A 66 N VAL A 143 SHEET 3 C 5 LYS A 238 TRP A 243 1 O LYS A 238 N GLY A 67 SHEET 4 C 5 TYR A 292 ASN A 294 1 O ILE A 293 N TRP A 243 SHEET 5 C 5 ILE A 316 ALA A 317 1 N ALA A 317 O TYR A 292 SHEET 1 D 2 THR A 114 GLY A 118 0 SHEET 2 D 2 VAL A 126 PRO A 129 -1 N VAL A 126 O GLY A 118 SHEET 1 E 8 ILE A 400 ILE A 402 0 SHEET 2 E 8 LYS A 342 HIS A 351 1 O SER A 348 N VAL A 401 SHEET 3 E 8 VAL A 413 GLU A 421 -1 N VAL A 413 O HIS A 351 SHEET 4 E 8 HIS A 427 VAL A 435 -1 O ASN A 428 N SER A 420 SHEET 5 E 8 HIS B 427 CYS B 436 -1 N ARG B 429 O VAL A 435 SHEET 6 E 8 LYS B 412 GLU B 421 -1 N LYS B 412 O CYS B 436 SHEET 7 E 8 LYS B 342 LEU B 352 -1 O LYS B 342 N GLU B 421 SHEET 8 E 8 ASP B 397 TYR B 404 1 O ASP B 397 N ILE B 346 SHEET 1 F 4 CYS B 19 THR B 20 0 SHEET 2 F 4 LEU B 27 TYR B 32 -1 O LEU B 27 N THR B 20 SHEET 3 F 4 GLN B 52 LEU B 58 -1 O GLN B 52 N TYR B 32 SHEET 4 F 4 VAL B 459 LYS B 462 -1 O SER B 460 N LYS B 57 SHEET 1 G 4 PHE B 142 SER B 145 0 SHEET 2 G 4 LEU B 66 ILE B 71 1 O LEU B 66 N VAL B 143 SHEET 3 G 4 VAL B 239 TRP B 243 1 N ILE B 240 O GLY B 67 SHEET 4 G 4 TYR B 292 ASN B 294 1 O ILE B 293 N TRP B 243 SHEET 1 H 2 THR B 114 ILE B 119 0 SHEET 2 H 2 ASP B 125 PRO B 129 -1 N VAL B 126 O GLY B 118 SHEET 1 I 2 LEU B 205 ASP B 206 0 SHEET 2 I 2 GLY B 209 VAL B 211 -1 N GLY B 209 O ASP B 206 CRYST1 153.543 97.062 122.064 90.00 125.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006513 0.000000 0.004683 0.00000 SCALE2 0.000000 0.010303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010091 0.00000