data_1P25 # _entry.id 1P25 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P25 pdb_00001p25 10.2210/pdb1p25/pdb NDB BD0064 ? ? RCSB RCSB018917 ? ? WWPDB D_1000018917 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-09 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P25 _pdbx_database_status.recvd_initial_deposition_date 2003-04-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1P24 . unspecified PDB 1P26 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Labiuk, S.L.' 1 'Delbaere, L.T.' 2 'Lee, J.S.' 3 # _citation.id primary _citation.title ;Cobalt(II), nickel(II) and zinc(II) do not bind to intra-helical N(7) guanine positions in the B-form crystal structure of d(GGCGCC) ; _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 8 _citation.page_first 715 _citation.page_last 720 _citation.year 2003 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14505075 _citation.pdbx_database_id_DOI 10.1007/s00775-003-0473-4 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Labiuk, S.L.' 1 ? primary 'Delbaere, L.T.' 2 ? primary 'Lee, J.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*CP*GP*CP*C)-3'" 1810.205 5 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 5 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGCGCC _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized by AlphaDNA (Quebec, PQ, Canada)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DC 6 12 12 DC C B . n C 1 1 DG 1 13 13 DG G C . n C 1 2 DG 2 14 14 DG G C . n C 1 3 DC 3 15 15 DC C C . n C 1 4 DG 4 16 16 DG G C . n C 1 5 DC 5 17 17 DC C C . n C 1 6 DC 6 18 18 DC C C . n D 1 1 DG 1 19 19 DG G D . n D 1 2 DG 2 20 20 DG G D . n D 1 3 DC 3 21 21 DC C D . n D 1 4 DG 4 22 22 DG G D . n D 1 5 DC 5 23 23 DC C D . n D 1 6 DC 6 24 24 DC C D . n E 1 1 DG 1 25 25 DG G E . n E 1 2 DG 2 26 26 DG G E . n E 1 3 DC 3 27 27 DC C E . n E 1 4 DG 4 28 28 DG G E . n E 1 5 DC 5 29 29 DC C E . n E 1 6 DC 6 30 30 DC C E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NI 1 101 101 NI NI A . G 2 NI 1 102 102 NI NI B . H 2 NI 1 103 103 NI NI C . I 2 NI 1 104 104 NI NI D . J 2 NI 1 105 105 NI NI E . K 3 HOH 1 201 201 HOH HOH A . K 3 HOH 2 202 202 HOH HOH A . K 3 HOH 3 203 203 HOH HOH A . K 3 HOH 4 204 204 HOH HOH A . K 3 HOH 5 205 205 HOH HOH A . L 3 HOH 1 206 206 HOH HOH B . L 3 HOH 2 207 207 HOH HOH B . L 3 HOH 3 208 208 HOH HOH B . L 3 HOH 4 209 209 HOH HOH B . L 3 HOH 5 210 210 HOH HOH B . M 3 HOH 1 211 211 HOH HOH C . M 3 HOH 2 212 212 HOH HOH C . M 3 HOH 3 213 213 HOH HOH C . M 3 HOH 4 214 214 HOH HOH C . M 3 HOH 5 215 215 HOH HOH C . N 3 HOH 1 216 216 HOH HOH D . N 3 HOH 2 217 217 HOH HOH D . N 3 HOH 3 218 218 HOH HOH D . N 3 HOH 4 219 219 HOH HOH D . N 3 HOH 5 220 220 HOH HOH D . O 3 HOH 1 221 221 HOH HOH E . O 3 HOH 2 222 222 HOH HOH E . O 3 HOH 3 223 223 HOH HOH E . O 3 HOH 4 224 224 HOH HOH E . O 3 HOH 5 225 225 HOH HOH E . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 3.851 ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1P25 _cell.length_a 68.99 _cell.length_b 68.99 _cell.length_c 56.18 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P25 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.cell_setting tetragonal _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1P25 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.79 _exptl_crystal.density_percent_sol 67.3 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'DNA, TAPS-HCl, NiCl2, MPD, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 Taps-HCl ? ? ? 1 2 1 NiCl2 ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-08-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9000 # _reflns.entry_id 1P25 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.90 _reflns.d_resolution_low 26. _reflns.number_all 3217 _reflns.number_obs 3217 _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 22.0 _reflns.B_iso_Wilson_estimate 47.9 _reflns.pdbx_redundancy 8.9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 80.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.6 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1P25 _refine.ls_d_res_high 2.90 _refine.ls_d_res_low 15. _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 2924 _refine.ls_number_reflns_obs 2706 _refine.ls_number_reflns_R_free 261 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.2281 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.276 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 9.0 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NDB ENTRY BD0040' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model 'Grouped B-values' _refine.B_iso_mean 29.4 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 940 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 970 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 15. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.996 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 32.665 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.305 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1P25 _struct.title 'Crystal structure of nickel(II)-d(GGCGCC)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P25 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, nickel binding, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1P25 _struct_ref.pdbx_db_accession 1P25 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1P25 A 1 ? 6 ? 1P25 1 ? 6 ? 1 6 2 1 1P25 B 1 ? 6 ? 1P25 7 ? 12 ? 7 12 3 1 1P25 C 1 ? 6 ? 1P25 13 ? 18 ? 13 18 4 1 1P25 D 1 ? 6 ? 1P25 19 ? 24 ? 19 24 5 1 1P25 E 1 ? 6 ? 1P25 25 ? 30 ? 25 30 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,F,K 2 1 B,C,G,H,L,M 3 1 D,E,I,J,N,O # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 56.1800000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 F NI . NI ? ? A DG 1 A NI 101 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc2 metalc ? ? F NI . NI ? ? ? 1_555 K HOH . O ? ? A NI 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc3 metalc ? ? F NI . NI ? ? ? 1_555 K HOH . O ? ? A NI 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc4 metalc ? ? F NI . NI ? ? ? 1_555 K HOH . O ? ? A NI 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc5 metalc ? ? F NI . NI ? ? ? 1_555 K HOH . O ? ? A NI 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc6 metalc ? ? F NI . NI ? ? ? 1_555 K HOH . O ? ? A NI 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc7 metalc ? ? B DG 1 N7 ? ? ? 1_555 G NI . NI ? ? B DG 7 B NI 102 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc8 metalc ? ? G NI . NI ? ? ? 1_555 L HOH . O ? ? B NI 102 B HOH 206 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc9 metalc ? ? G NI . NI ? ? ? 1_555 L HOH . O ? ? B NI 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc10 metalc ? ? G NI . NI ? ? ? 1_555 L HOH . O ? ? B NI 102 B HOH 208 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc11 metalc ? ? G NI . NI ? ? ? 1_555 L HOH . O ? ? B NI 102 B HOH 209 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc12 metalc ? ? G NI . NI ? ? ? 1_555 L HOH . O ? ? B NI 102 B HOH 210 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc13 metalc ? ? C DG 1 N7 ? ? ? 1_555 H NI . NI ? ? C DG 13 C NI 103 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc14 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? C NI 103 C HOH 211 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc15 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? C NI 103 C HOH 212 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc16 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? C NI 103 C HOH 213 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc17 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? C NI 103 C HOH 214 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc18 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? C NI 103 C HOH 215 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc19 metalc ? ? D DG 1 N7 ? ? ? 1_555 I NI . NI ? ? D DG 19 D NI 104 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc20 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? D NI 104 D HOH 216 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc21 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? D NI 104 D HOH 217 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc22 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? D NI 104 D HOH 218 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc23 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? D NI 104 D HOH 219 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc24 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? D NI 104 D HOH 220 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc25 metalc ? ? E DG 1 N7 ? ? ? 1_555 J NI . NI ? ? E DG 25 E NI 105 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc26 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? E NI 105 E HOH 221 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc27 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? E NI 105 E HOH 222 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc28 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? E NI 105 E HOH 223 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc29 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? E NI 105 E HOH 224 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc30 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? E NI 105 E HOH 225 1_555 ? ? ? ? ? ? ? 2.069 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 7 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 9 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 12 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DG 1 N1 ? ? ? 1_555 E DC 6 N3 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DG 1 N2 ? ? ? 1_555 E DC 6 O2 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DG 1 O6 ? ? ? 1_555 E DC 6 N4 ? ? D DG 19 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DG 2 N1 ? ? ? 1_555 E DC 5 N3 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DG 2 N2 ? ? ? 1_555 E DC 5 O2 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DG 2 O6 ? ? ? 1_555 E DC 5 N4 ? ? D DG 20 E DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DC 3 N3 ? ? ? 1_555 E DG 4 N1 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DC 3 N4 ? ? ? 1_555 E DG 4 O6 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DG 4 N2 ? ? D DC 21 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D DG 4 N1 ? ? ? 1_555 E DC 3 N3 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D DG 4 N2 ? ? ? 1_555 E DC 3 O2 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? D DG 4 O6 ? ? ? 1_555 E DC 3 N4 ? ? D DG 22 E DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D DC 5 N3 ? ? ? 1_555 E DG 2 N1 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DC 5 N4 ? ? ? 1_555 E DG 2 O6 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D DC 5 O2 ? ? ? 1_555 E DG 2 N2 ? ? D DC 23 E DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D DC 6 N3 ? ? ? 1_555 E DG 1 N1 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DC 6 N4 ? ? ? 1_555 E DG 1 O6 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DC 6 O2 ? ? ? 1_555 E DG 1 N2 ? ? D DC 24 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 1 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 3 A DG 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 4 A DC 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 6 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 201 ? 1_555 89.8 ? 2 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 202 ? 1_555 91.1 ? 3 O ? K HOH . ? A HOH 201 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 202 ? 1_555 89.8 ? 4 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 89.8 ? 5 O ? K HOH . ? A HOH 201 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 179.3 ? 6 O ? K HOH . ? A HOH 202 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 90.8 ? 7 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 91.0 ? 8 O ? K HOH . ? A HOH 201 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 87.4 ? 9 O ? K HOH . ? A HOH 202 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 176.5 ? 10 O ? K HOH . ? A HOH 203 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 92.1 ? 11 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 178.7 ? 12 O ? K HOH . ? A HOH 201 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 88.9 ? 13 O ? K HOH . ? A HOH 202 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 89.2 ? 14 O ? K HOH . ? A HOH 203 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 91.5 ? 15 O ? K HOH . ? A HOH 204 ? 1_555 NI ? F NI . ? A NI 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 88.6 ? 16 N7 ? B DG 1 ? B DG 7 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 206 ? 1_555 89.6 ? 17 N7 ? B DG 1 ? B DG 7 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 207 ? 1_555 89.6 ? 18 O ? L HOH . ? B HOH 206 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 207 ? 1_555 89.0 ? 19 N7 ? B DG 1 ? B DG 7 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 208 ? 1_555 90.2 ? 20 O ? L HOH . ? B HOH 206 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 208 ? 1_555 174.6 ? 21 O ? L HOH . ? B HOH 207 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 208 ? 1_555 85.6 ? 22 N7 ? B DG 1 ? B DG 7 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 209 ? 1_555 90.8 ? 23 O ? L HOH . ? B HOH 206 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 209 ? 1_555 101.1 ? 24 O ? L HOH . ? B HOH 207 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 209 ? 1_555 169.9 ? 25 O ? L HOH . ? B HOH 208 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 209 ? 1_555 84.3 ? 26 N7 ? B DG 1 ? B DG 7 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 210 ? 1_555 178.4 ? 27 O ? L HOH . ? B HOH 206 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 210 ? 1_555 91.2 ? 28 O ? L HOH . ? B HOH 207 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 210 ? 1_555 91.9 ? 29 O ? L HOH . ? B HOH 208 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 210 ? 1_555 89.1 ? 30 O ? L HOH . ? B HOH 209 ? 1_555 NI ? G NI . ? B NI 102 ? 1_555 O ? L HOH . ? B HOH 210 ? 1_555 87.7 ? 31 N7 ? C DG 1 ? C DG 13 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 211 ? 1_555 90.3 ? 32 N7 ? C DG 1 ? C DG 13 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 212 ? 1_555 91.2 ? 33 O ? M HOH . ? C HOH 211 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 212 ? 1_555 89.9 ? 34 N7 ? C DG 1 ? C DG 13 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 213 ? 1_555 89.5 ? 35 O ? M HOH . ? C HOH 211 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 213 ? 1_555 176.4 ? 36 O ? M HOH . ? C HOH 212 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 213 ? 1_555 93.7 ? 37 N7 ? C DG 1 ? C DG 13 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 214 ? 1_555 90.4 ? 38 O ? M HOH . ? C HOH 211 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 214 ? 1_555 92.4 ? 39 O ? M HOH . ? C HOH 212 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 214 ? 1_555 177.2 ? 40 O ? M HOH . ? C HOH 213 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 214 ? 1_555 84.0 ? 41 N7 ? C DG 1 ? C DG 13 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 215 ? 1_555 179.1 ? 42 O ? M HOH . ? C HOH 211 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 215 ? 1_555 88.8 ? 43 O ? M HOH . ? C HOH 212 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 215 ? 1_555 88.7 ? 44 O ? M HOH . ? C HOH 213 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 215 ? 1_555 91.4 ? 45 O ? M HOH . ? C HOH 214 ? 1_555 NI ? H NI . ? C NI 103 ? 1_555 O ? M HOH . ? C HOH 215 ? 1_555 89.8 ? 46 N7 ? D DG 1 ? D DG 19 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 216 ? 1_555 91.0 ? 47 N7 ? D DG 1 ? D DG 19 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 217 ? 1_555 90.5 ? 48 O ? N HOH . ? D HOH 216 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 217 ? 1_555 92.1 ? 49 N7 ? D DG 1 ? D DG 19 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 218 ? 1_555 90.0 ? 50 O ? N HOH . ? D HOH 216 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 218 ? 1_555 179.0 ? 51 O ? N HOH . ? D HOH 217 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 218 ? 1_555 87.5 ? 52 N7 ? D DG 1 ? D DG 19 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 219 ? 1_555 89.9 ? 53 O ? N HOH . ? D HOH 216 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 219 ? 1_555 87.5 ? 54 O ? N HOH . ? D HOH 217 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 219 ? 1_555 179.5 ? 55 O ? N HOH . ? D HOH 218 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 219 ? 1_555 92.8 ? 56 N7 ? D DG 1 ? D DG 19 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 220 ? 1_555 179.1 ? 57 O ? N HOH . ? D HOH 216 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 220 ? 1_555 88.1 ? 58 O ? N HOH . ? D HOH 217 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 220 ? 1_555 89.7 ? 59 O ? N HOH . ? D HOH 218 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 220 ? 1_555 91.0 ? 60 O ? N HOH . ? D HOH 219 ? 1_555 NI ? I NI . ? D NI 104 ? 1_555 O ? N HOH . ? D HOH 220 ? 1_555 90.0 ? 61 N7 ? E DG 1 ? E DG 25 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 221 ? 1_555 88.8 ? 62 N7 ? E DG 1 ? E DG 25 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 222 ? 1_555 89.4 ? 63 O ? O HOH . ? E HOH 221 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 222 ? 1_555 99.8 ? 64 N7 ? E DG 1 ? E DG 25 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 223 ? 1_555 91.2 ? 65 O ? O HOH . ? E HOH 221 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 223 ? 1_555 172.4 ? 66 O ? O HOH . ? E HOH 222 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 223 ? 1_555 87.8 ? 67 N7 ? E DG 1 ? E DG 25 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 224 ? 1_555 90.2 ? 68 O ? O HOH . ? E HOH 221 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 224 ? 1_555 82.9 ? 69 O ? O HOH . ? E HOH 222 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 224 ? 1_555 177.3 ? 70 O ? O HOH . ? E HOH 223 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 224 ? 1_555 89.5 ? 71 N7 ? E DG 1 ? E DG 25 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 225 ? 1_555 177.5 ? 72 O ? O HOH . ? E HOH 221 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 225 ? 1_555 93.3 ? 73 O ? O HOH . ? E HOH 222 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 225 ? 1_555 91.6 ? 74 O ? O HOH . ? E HOH 223 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 225 ? 1_555 86.6 ? 75 O ? O HOH . ? E HOH 224 ? 1_555 NI ? J NI . ? E NI 105 ? 1_555 O ? O HOH . ? E HOH 225 ? 1_555 88.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 101 ? 6 'BINDING SITE FOR RESIDUE NI A 101' AC2 Software B NI 102 ? 6 'BINDING SITE FOR RESIDUE NI B 102' AC3 Software C NI 103 ? 6 'BINDING SITE FOR RESIDUE NI C 103' AC4 Software D NI 104 ? 7 'BINDING SITE FOR RESIDUE NI D 104' AC5 Software E NI 105 ? 7 'BINDING SITE FOR RESIDUE NI E 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 6 HOH K . ? HOH A 201 . ? 1_555 ? 3 AC1 6 HOH K . ? HOH A 202 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH A 203 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH A 204 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH A 205 . ? 1_555 ? 7 AC2 6 DG B 1 ? DG B 7 . ? 1_555 ? 8 AC2 6 HOH L . ? HOH B 206 . ? 1_555 ? 9 AC2 6 HOH L . ? HOH B 207 . ? 1_555 ? 10 AC2 6 HOH L . ? HOH B 208 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH B 209 . ? 1_555 ? 12 AC2 6 HOH L . ? HOH B 210 . ? 1_555 ? 13 AC3 6 DG C 1 ? DG C 13 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH C 211 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH C 212 . ? 1_555 ? 16 AC3 6 HOH M . ? HOH C 213 . ? 1_555 ? 17 AC3 6 HOH M . ? HOH C 214 . ? 1_555 ? 18 AC3 6 HOH M . ? HOH C 215 . ? 1_555 ? 19 AC4 7 DC A 5 ? DC A 5 . ? 3_555 ? 20 AC4 7 DG D 1 ? DG D 19 . ? 1_555 ? 21 AC4 7 HOH N . ? HOH D 216 . ? 1_555 ? 22 AC4 7 HOH N . ? HOH D 217 . ? 1_555 ? 23 AC4 7 HOH N . ? HOH D 218 . ? 1_555 ? 24 AC4 7 HOH N . ? HOH D 219 . ? 1_555 ? 25 AC4 7 HOH N . ? HOH D 220 . ? 1_555 ? 26 AC5 7 DC A 3 ? DC A 3 . ? 3_555 ? 27 AC5 7 DG E 1 ? DG E 25 . ? 1_555 ? 28 AC5 7 HOH O . ? HOH E 221 . ? 1_555 ? 29 AC5 7 HOH O . ? HOH E 222 . ? 1_555 ? 30 AC5 7 HOH O . ? HOH E 223 . ? 1_555 ? 31 AC5 7 HOH O . ? HOH E 224 . ? 1_555 ? 32 AC5 7 HOH O . ? HOH E 225 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? 1.585 1.512 0.073 0.007 N 2 1 P A DC 6 ? ? "O5'" A DC 6 ? ? 1.669 1.593 0.076 0.010 N 3 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.474 1.425 0.049 0.008 N 4 1 C2 D DG 22 ? ? N3 D DG 22 ? ? 1.377 1.323 0.054 0.008 N 5 1 C8 E DG 25 ? ? N9 E DG 25 ? ? 1.286 1.374 -0.088 0.007 N 6 1 C5 E DG 26 ? ? C6 E DG 26 ? ? 1.346 1.419 -0.073 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A DG 1 ? ? N3 A DG 1 ? ? C4 A DG 1 ? ? 115.12 111.90 3.22 0.50 N 2 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.73 113.10 3.63 0.50 N 3 1 C8 A DG 1 ? ? N9 A DG 1 ? ? C4 A DG 1 ? ? 103.44 106.40 -2.96 0.40 N 4 1 N9 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 108.71 105.40 3.31 0.40 N 5 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.41 113.10 3.31 0.50 N 6 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 111.27 120.90 -9.63 1.60 N 7 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 100.83 105.90 -5.07 0.80 N 8 1 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 122.43 118.00 4.43 0.70 N 9 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 115.28 120.20 -4.92 0.70 N 10 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 129.48 119.70 9.78 1.20 Y 11 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 108.83 120.90 -12.07 1.60 N 12 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 97.79 102.20 -4.41 0.70 N 13 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.45 106.40 -2.95 0.40 N 14 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.91 119.70 8.21 1.20 Y 15 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 118.85 110.70 8.15 1.20 N 16 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.21 108.30 5.91 0.30 N 17 1 P A DC 6 ? ? "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? 110.22 120.90 -10.68 1.60 N 18 1 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 97.89 102.20 -4.31 0.70 N 19 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 119.28 108.30 10.98 0.30 N 20 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 124.56 118.90 5.66 0.60 N 21 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.06 121.90 -5.84 0.70 N 22 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.52 108.30 2.22 0.30 N 23 1 C8 B DG 7 ? ? N9 B DG 7 ? ? C4 B DG 7 ? ? 103.95 106.40 -2.45 0.40 N 24 1 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B DG 8 ? ? 127.07 119.70 7.37 1.20 Y 25 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 114.77 108.30 6.47 0.30 N 26 1 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 103.83 106.40 -2.57 0.40 N 27 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 124.60 128.60 -4.00 0.60 N 28 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 110.02 106.00 4.02 0.60 N 29 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? 97.29 102.20 -4.91 0.70 N 30 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 113.74 108.30 5.44 0.30 N 31 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 124.27 118.90 5.37 0.60 N 32 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 115.16 121.90 -6.74 0.70 N 33 1 N7 B DG 10 ? ? C8 B DG 10 ? ? N9 B DG 10 ? ? 116.82 113.10 3.72 0.50 N 34 1 C8 B DG 10 ? ? N9 B DG 10 ? ? C4 B DG 10 ? ? 103.77 106.40 -2.63 0.40 N 35 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 123.60 119.90 3.70 0.60 N 36 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.06 128.60 -4.54 0.60 N 37 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.94 118.90 4.04 0.60 N 38 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 117.48 121.90 -4.42 0.70 N 39 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 114.06 108.30 5.76 0.30 N 40 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.99 118.90 4.09 0.60 N 41 1 "O4'" C DG 13 ? ? "C1'" C DG 13 ? ? N9 C DG 13 ? ? 111.35 108.30 3.05 0.30 N 42 1 N7 C DG 13 ? ? C8 C DG 13 ? ? N9 C DG 13 ? ? 116.92 113.10 3.82 0.50 N 43 1 C8 C DG 13 ? ? N9 C DG 13 ? ? C4 C DG 13 ? ? 102.92 106.40 -3.48 0.40 N 44 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 111.33 108.30 3.03 0.30 N 45 1 C4 C DG 14 ? ? C5 C DG 14 ? ? N7 C DG 14 ? ? 113.29 110.80 2.49 0.40 N 46 1 C5 C DG 14 ? ? N7 C DG 14 ? ? C8 C DG 14 ? ? 99.64 104.30 -4.66 0.50 N 47 1 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 117.38 113.10 4.28 0.50 N 48 1 C8 C DG 14 ? ? N9 C DG 14 ? ? C4 C DG 14 ? ? 103.01 106.40 -3.39 0.40 N 49 1 C6 C DG 14 ? ? C5 C DG 14 ? ? N7 C DG 14 ? ? 126.56 130.40 -3.84 0.60 N 50 1 N1 C DG 14 ? ? C6 C DG 14 ? ? O6 C DG 14 ? ? 125.90 119.90 6.00 0.60 N 51 1 C5 C DG 14 ? ? C6 C DG 14 ? ? O6 C DG 14 ? ? 121.98 128.60 -6.62 0.60 N 52 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 120.53 108.30 12.23 0.30 N 53 1 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 117.96 108.30 9.66 0.30 N 54 1 N7 C DG 16 ? ? C8 C DG 16 ? ? N9 C DG 16 ? ? 117.37 113.10 4.27 0.50 N 55 1 C8 C DG 16 ? ? N9 C DG 16 ? ? C4 C DG 16 ? ? 102.17 106.40 -4.23 0.40 N 56 1 P C DC 17 ? ? "O5'" C DC 17 ? ? "C5'" C DC 17 ? ? 111.02 120.90 -9.88 1.60 N 57 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1 C DC 17 ? ? 110.96 108.30 2.66 0.30 N 58 1 "O4'" C DC 18 ? ? "C1'" C DC 18 ? ? N1 C DC 18 ? ? 112.34 108.30 4.04 0.30 N 59 1 "O4'" D DG 19 ? ? "C1'" D DG 19 ? ? N9 D DG 19 ? ? 102.11 108.00 -5.89 0.70 N 60 1 P D DC 21 ? ? "O5'" D DC 21 ? ? "C5'" D DC 21 ? ? 108.86 120.90 -12.04 1.60 N 61 1 "O4'" D DC 21 ? ? "C1'" D DC 21 ? ? N1 D DC 21 ? ? 112.06 108.30 3.76 0.30 N 62 1 C6 D DC 21 ? ? N1 D DC 21 ? ? C2 D DC 21 ? ? 122.78 120.30 2.48 0.40 N 63 1 "C5'" D DG 22 ? ? "C4'" D DG 22 ? ? "C3'" D DG 22 ? ? 102.54 114.10 -11.56 1.80 N 64 1 "C4'" D DG 22 ? ? "C3'" D DG 22 ? ? "C2'" D DG 22 ? ? 96.90 102.20 -5.30 0.70 N 65 1 "O4'" D DG 22 ? ? "C1'" D DG 22 ? ? N9 D DG 22 ? ? 127.40 108.30 19.10 0.30 N 66 1 C5 D DG 22 ? ? N7 D DG 22 ? ? C8 D DG 22 ? ? 100.88 104.30 -3.42 0.50 N 67 1 N7 D DG 22 ? ? C8 D DG 22 ? ? N9 D DG 22 ? ? 117.61 113.10 4.51 0.50 N 68 1 C8 D DG 22 ? ? N9 D DG 22 ? ? C4 D DG 22 ? ? 103.87 106.40 -2.53 0.40 N 69 1 C6 D DG 22 ? ? C5 D DG 22 ? ? N7 D DG 22 ? ? 126.66 130.40 -3.74 0.60 N 70 1 N1 D DC 23 ? ? C2 D DC 23 ? ? O2 D DC 23 ? ? 122.62 118.90 3.72 0.60 N 71 1 N3 D DC 23 ? ? C2 D DC 23 ? ? O2 D DC 23 ? ? 116.79 121.90 -5.11 0.70 N 72 1 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 125.16 118.90 6.26 0.60 N 73 1 N3 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 116.23 121.90 -5.67 0.70 N 74 1 N7 E DG 25 ? ? C8 E DG 25 ? ? N9 E DG 25 ? ? 116.67 113.10 3.57 0.50 N 75 1 C4 E DG 26 ? ? C5 E DG 26 ? ? N7 E DG 26 ? ? 113.55 110.80 2.75 0.40 N 76 1 C5 E DG 26 ? ? N7 E DG 26 ? ? C8 E DG 26 ? ? 99.08 104.30 -5.22 0.50 N 77 1 N7 E DG 26 ? ? C8 E DG 26 ? ? N9 E DG 26 ? ? 117.22 113.10 4.12 0.50 N 78 1 C8 E DG 26 ? ? N9 E DG 26 ? ? C4 E DG 26 ? ? 103.58 106.40 -2.82 0.40 N 79 1 N1 E DG 26 ? ? C6 E DG 26 ? ? O6 E DG 26 ? ? 124.28 119.90 4.38 0.60 N 80 1 C5 E DG 26 ? ? C6 E DG 26 ? ? O6 E DG 26 ? ? 122.55 128.60 -6.05 0.60 N 81 1 P E DC 27 ? ? "O5'" E DC 27 ? ? "C5'" E DC 27 ? ? 108.23 120.90 -12.67 1.60 N 82 1 "O4'" E DC 27 ? ? "C1'" E DC 27 ? ? N1 E DC 27 ? ? 113.86 108.30 5.56 0.30 N 83 1 P E DG 28 ? ? "O5'" E DG 28 ? ? "C5'" E DG 28 ? ? 109.15 120.90 -11.75 1.60 N 84 1 "O4'" E DG 28 ? ? "C1'" E DG 28 ? ? N9 E DG 28 ? ? 120.80 108.30 12.50 0.30 N 85 1 C5 E DG 28 ? ? N7 E DG 28 ? ? C8 E DG 28 ? ? 100.80 104.30 -3.50 0.50 N 86 1 N7 E DG 28 ? ? C8 E DG 28 ? ? N9 E DG 28 ? ? 116.20 113.10 3.10 0.50 N 87 1 N1 E DC 29 ? ? C2 E DC 29 ? ? O2 E DC 29 ? ? 123.35 118.90 4.45 0.60 N 88 1 P E DC 30 ? ? "O5'" E DC 30 ? ? "C5'" E DC 30 ? ? 109.45 120.90 -11.45 1.60 N 89 1 "O4'" E DC 30 ? ? "C1'" E DC 30 ? ? N1 E DC 30 ? ? 121.75 108.30 13.45 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 NI NI NI N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P25 'double helix' 1P25 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 6 1_555 0.392 -0.281 0.194 1.912 -12.189 0.445 1 B_DG7:DC18_C B 7 ? C 18 ? 19 1 1 B DG 2 1_555 C DC 5 1_555 -0.565 -0.520 0.074 -1.919 -5.287 -11.187 2 B_DG8:DC17_C B 8 ? C 17 ? 19 1 1 B DC 3 1_555 C DG 4 1_555 0.029 -0.272 0.284 -3.540 -1.898 -4.298 3 B_DC9:DG16_C B 9 ? C 16 ? 19 1 1 B DG 4 1_555 C DC 3 1_555 -0.068 -0.429 0.167 6.123 -0.583 -7.021 4 B_DG10:DC15_C B 10 ? C 15 ? 19 1 1 B DC 5 1_555 C DG 2 1_555 0.196 -0.327 0.201 0.278 -3.756 -1.082 5 B_DC11:DG14_C B 11 ? C 14 ? 19 1 1 B DC 6 1_555 C DG 1 1_555 0.354 -0.126 0.529 -10.213 -6.119 -0.407 6 B_DC12:DG13_C B 12 ? C 13 ? 19 1 1 D DG 1 1_555 E DC 6 1_555 0.092 -0.204 0.356 0.665 -9.894 -2.284 7 D_DG19:DC30_E D 19 ? E 30 ? 19 1 1 D DG 2 1_555 E DC 5 1_555 -0.068 -0.349 0.259 1.397 -0.360 -3.094 8 D_DG20:DC29_E D 20 ? E 29 ? 19 1 1 D DC 3 1_555 E DG 4 1_555 0.047 -0.397 0.222 2.820 -4.805 -8.526 9 D_DC21:DG28_E D 21 ? E 28 ? 19 1 1 D DG 4 1_555 E DC 3 1_555 0.006 -0.464 0.045 0.830 -2.484 -6.363 10 D_DG22:DC27_E D 22 ? E 27 ? 19 1 1 D DC 5 1_555 E DG 2 1_555 -0.102 -0.448 0.091 0.933 5.414 -3.557 11 D_DC23:DG26_E D 23 ? E 26 ? 19 1 1 D DC 6 1_555 E DG 1 1_555 0.431 -0.394 0.307 -1.762 -3.356 -1.117 12 D_DC24:DG25_E D 24 ? E 25 ? 19 1 1 A DG 1 1_555 A DC 6 7_556 -0.414 -0.358 0.071 -2.841 -5.508 -4.654 13 A_DG1:DC6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 7_556 0.111 -0.292 0.214 4.706 -3.446 -1.959 14 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DC 3 1_555 A DG 4 7_556 0.399 -0.657 0.022 -1.599 -0.955 -2.035 15 A_DC3:DG4_A A 3 ? A 4 ? 19 1 1 A DG 4 1_555 A DC 3 7_556 -0.399 -0.657 0.022 1.599 -0.955 -2.035 16 A_DG4:DC3_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 7_556 -0.111 -0.292 0.214 -4.706 -3.446 -1.959 17 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DC 6 1_555 A DG 1 7_556 0.414 -0.358 0.071 2.841 -5.508 -4.654 18 A_DC6:DG1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 6 1_555 B DG 2 1_555 C DC 5 1_555 -0.793 -0.606 3.161 -2.532 2.272 30.455 -1.580 1.016 3.162 4.307 4.800 30.640 1 BB_DG7DG8:DC17DC18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 B DG 2 1_555 C DC 5 1_555 B DC 3 1_555 C DG 4 1_555 0.805 -0.937 3.404 0.955 3.168 37.749 -1.862 -1.113 3.336 4.885 -1.473 37.888 2 BB_DG8DC9:DG16DC17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DC 3 1_555 C DG 4 1_555 B DG 4 1_555 C DC 3 1_555 0.258 0.368 2.944 2.424 3.762 35.991 0.112 -0.105 2.977 6.060 -3.904 36.259 3 BB_DC9DG10:DC15DG16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 B DG 4 1_555 C DC 3 1_555 B DC 5 1_555 C DG 2 1_555 -0.302 -0.279 3.504 -0.665 0.828 36.036 -0.576 0.386 3.502 1.339 1.074 36.051 4 BB_DG10DC11:DG14DC15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 B DC 5 1_555 C DG 2 1_555 B DC 6 1_555 C DG 1 1_555 0.316 -0.564 3.427 0.733 6.323 35.682 -1.825 -0.402 3.288 10.218 -1.185 36.227 5 BB_DC11DC12:DG13DG14_CC B 11 ? C 14 ? B 12 ? C 13 ? 1 B DC 6 1_555 C DG 1 1_555 D DG 1 1_555 E DC 6 1_555 -0.057 0.450 3.233 2.474 -3.453 -24.949 -0.026 0.588 3.254 7.920 5.674 -25.303 6 BD_DC12DG19:DC30DG13_EC B 12 ? C 13 ? D 19 ? E 30 ? 1 D DG 1 1_555 E DC 6 1_555 D DG 2 1_555 E DC 5 1_555 -0.504 -0.084 3.115 -0.349 5.630 29.901 -1.233 0.894 3.054 10.791 0.669 30.416 7 DD_DG19DG20:DC29DC30_EE D 19 ? E 30 ? D 20 ? E 29 ? 1 D DG 2 1_555 E DC 5 1_555 D DC 3 1_555 E DG 4 1_555 0.380 -0.576 3.152 0.663 4.337 36.325 -1.488 -0.518 3.071 6.926 -1.059 36.580 8 DD_DG20DC21:DG28DC29_EE D 20 ? E 29 ? D 21 ? E 28 ? 1 D DC 3 1_555 E DG 4 1_555 D DG 4 1_555 E DC 3 1_555 0.337 -0.410 3.432 2.029 3.416 32.728 -1.330 -0.233 3.387 6.034 -3.584 32.962 9 DD_DC21DG22:DC27DG28_EE D 21 ? E 28 ? D 22 ? E 27 ? 1 D DG 4 1_555 E DC 3 1_555 D DC 5 1_555 E DG 2 1_555 -0.270 -0.104 3.238 -1.873 3.966 32.934 -0.840 0.161 3.214 6.958 3.286 33.217 10 DD_DG22DC23:DG26DC27_EE D 22 ? E 27 ? D 23 ? E 26 ? 1 D DC 5 1_555 E DG 2 1_555 D DC 6 1_555 E DG 1 1_555 0.290 -0.256 3.412 -0.494 -0.657 35.826 -0.318 -0.545 3.411 -1.067 0.803 35.835 11 DD_DC23DC24:DG25DG26_EE D 23 ? E 26 ? D 24 ? E 25 ? 1 A DG 1 1_555 A DC 6 7_556 A DG 2 1_555 A DC 5 7_556 0.115 -0.331 3.144 -2.003 2.611 33.874 -0.963 -0.502 3.099 4.468 3.428 34.029 12 AA_DG1DG2:DC5DC6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 7_556 A DC 3 1_555 A DG 4 7_556 -0.395 -0.486 3.398 0.417 3.396 35.045 -1.324 0.717 3.333 5.622 -0.691 35.207 13 AA_DG2DC3:DG4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DC 3 1_555 A DG 4 7_556 A DG 4 1_555 A DC 3 7_556 0.000 0.080 3.307 0.000 5.990 28.659 -1.155 0.000 3.256 11.935 0.000 29.266 14 AA_DC3DG4:DC3DG4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DG 4 1_555 A DC 3 7_556 A DC 5 1_555 A DG 2 7_556 0.395 -0.486 3.398 -0.417 3.396 35.045 -1.324 -0.717 3.333 5.622 0.691 35.207 15 AA_DG4DC5:DG2DC3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 7_556 A DC 6 1_555 A DG 1 7_556 -0.115 -0.331 3.144 2.003 2.611 33.874 -0.963 0.502 3.099 4.468 -3.428 34.029 16 AA_DC5DC6:DG1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _pdbx_initial_refinement_model.accession_code 1F6C _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ENTRY BD0040' # _atom_sites.entry_id 1P25 _atom_sites.fract_transf_matrix[1][1] 0.014495 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014495 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017800 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P # loop_