HEADER TRANSPORT PROTEIN 15-APR-03 1P28 TITLE THE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM THE TITLE 2 COCKROACH LEUCOPHAEA MADERAE IN COMPLEX WITH A COMPONENT OF THE TITLE 3 PHEROMONAL BLEND: 3-HYDROXY-BUTAN-2-ONE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCOPHAEA MADERAE; SOURCE 3 ORGANISM_COMMON: MADEIRA COCKROACH; SOURCE 4 ORGANISM_TAXID: 6988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS PHEROMONE BINDING PROTEIN, 3-HYDROXY-BUTAN-2-ONE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LARTIGUE,A.GRUEZ,S.SPINELLI,S.RIVIERE,R.BROSSUT,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 4 13-JUL-11 1P28 1 VERSN REVDAT 3 24-FEB-09 1P28 1 VERSN REVDAT 2 19-AUG-03 1P28 1 JRNL REVDAT 1 05-AUG-03 1P28 0 JRNL AUTH A.LARTIGUE,A.GRUEZ,S.SPINELLI,S.RIVIERE,R.BROSSUT,M.TEGONI, JRNL AUTH 2 C.CAMBILLAU JRNL TITL THE CRYSTAL STRUCTURE OF A COCKROACH PHEROMONE-BINDING JRNL TITL 2 PROTEIN SUGGESTS A NEW LIGAND BINDING AND RELEASE MECHANISM JRNL REF J.BIOL.CHEM. V. 278 30213 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12766173 JRNL DOI 10.1074/JBC.M304688200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 20755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1904 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1857 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1652 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2510 ; 1.493 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3861 ; 1.671 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 5.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2084 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 348 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 480 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1965 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1080 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 145 ; 0.281 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 77 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 0.871 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1890 ; 1.560 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 681 ; 2.363 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 3.875 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8070 0.2160 2.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0100 REMARK 3 T33: 0.0384 T12: -0.0058 REMARK 3 T13: -0.0037 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4056 L22: 0.8090 REMARK 3 L33: 0.6096 L12: -0.2334 REMARK 3 L13: -0.1807 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0096 S13: 0.0003 REMARK 3 S21: 0.0521 S22: -0.0357 S23: -0.0522 REMARK 3 S31: -0.0215 S32: 0.0162 S33: 0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5750 22.7250 20.1530 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: 0.0124 REMARK 3 T33: 0.0175 T12: -0.0052 REMARK 3 T13: -0.0119 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5988 L22: 0.7179 REMARK 3 L33: 1.4373 L12: 0.2241 REMARK 3 L13: -0.9667 L23: -0.5301 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0214 S13: 0.0039 REMARK 3 S21: 0.0346 S22: -0.0204 S23: -0.0374 REMARK 3 S31: 0.0108 S32: 0.0062 S33: 0.0597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1P28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919214 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.748 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18200 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACITRATE, NA/K TARTRATE, AMMONIUM REMARK 280 SULFATE, PH 5.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.10500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ASP A -9 REMARK 465 ILE A -8 REMARK 465 GLY A -7 REMARK 465 ILE A -6 REMARK 465 ASN A -5 REMARK 465 SER A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 TYR A 118 REMARK 465 MET B -10 REMARK 465 ASP B -9 REMARK 465 ILE B -8 REMARK 465 GLY B -7 REMARK 465 ILE B -6 REMARK 465 ASN B -5 REMARK 465 SER B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 81 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1007 O HOH B 1111 1.57 REMARK 500 O HOH B 1074 O HOH B 1105 1.63 REMARK 500 O HOH B 1111 O HOH B 1115 1.87 REMARK 500 O HOH B 1058 O HOH B 1109 1.87 REMARK 500 O HOH B 1012 O HOH B 1105 1.93 REMARK 500 OD1 ASP A 25 O HOH A 1078 1.95 REMARK 500 O HOH A 1038 O HOH B 1094 2.09 REMARK 500 OD1 ASN B 78 O HOH B 1111 2.12 REMARK 500 O HOH A 1088 O HOH A 1089 2.13 REMARK 500 O HOH B 1089 O HOH B 1109 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1038 O HOH A 1124 2555 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 67 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 79 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 105 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 75 -39.97 -130.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1123 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBR A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBS B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBR B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ORG RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM REMARK 900 THE COCKROACH LEUCOPHAEA MADERAE REVEALS A NEW MECHANISM OF REMARK 900 PHEROMONE BINDING REMARK 900 RELATED ID: 1OW4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM THE REMARK 900 COCKROACH LEUCOPHAEA MADERAE IN COMPLEX WITH THE REMARK 900 FLUORESCENT REPORTER ANS (1-ANILINONAPHTALENE-8-SULFONIC REMARK 900 ACID) DBREF 1P28 A -10 118 UNP Q8MTC1 Q8MTC1_LEUMA 9 137 DBREF 1P28 B -10 118 UNP Q8MTC1 Q8MTC1_LEUMA 9 137 SEQADV 1P28 MET A -10 UNP Q8MTC1 LEU 9 CLONING ARTIFACT SEQADV 1P28 ASP A -9 UNP Q8MTC1 LEU 10 CLONING ARTIFACT SEQADV 1P28 ILE A -8 UNP Q8MTC1 ALA 11 CLONING ARTIFACT SEQADV 1P28 GLY A -7 UNP Q8MTC1 VAL 12 CLONING ARTIFACT SEQADV 1P28 ILE A -6 UNP Q8MTC1 ALA 13 CLONING ARTIFACT SEQADV 1P28 ASN A -5 UNP Q8MTC1 THR 14 CLONING ARTIFACT SEQADV 1P28 SER A -4 UNP Q8MTC1 ALA 15 CLONING ARTIFACT SEQADV 1P28 ASP A -3 UNP Q8MTC1 THR 16 CLONING ARTIFACT SEQADV 1P28 PRO A -2 UNP Q8MTC1 LEU 17 CLONING ARTIFACT SEQADV 1P28 ASN A -1 UNP Q8MTC1 ALA 18 CLONING ARTIFACT SEQADV 1P28 SER A 0 UNP Q8MTC1 ASP 19 CLONING ARTIFACT SEQADV 1P28 MET B -10 UNP Q8MTC1 LEU 9 CLONING ARTIFACT SEQADV 1P28 ASP B -9 UNP Q8MTC1 LEU 10 CLONING ARTIFACT SEQADV 1P28 ILE B -8 UNP Q8MTC1 ALA 11 CLONING ARTIFACT SEQADV 1P28 GLY B -7 UNP Q8MTC1 VAL 12 CLONING ARTIFACT SEQADV 1P28 ILE B -6 UNP Q8MTC1 ALA 13 CLONING ARTIFACT SEQADV 1P28 ASN B -5 UNP Q8MTC1 THR 14 CLONING ARTIFACT SEQADV 1P28 SER B -4 UNP Q8MTC1 ALA 15 CLONING ARTIFACT SEQADV 1P28 ASP B -3 UNP Q8MTC1 THR 16 CLONING ARTIFACT SEQADV 1P28 PRO B -2 UNP Q8MTC1 LEU 17 CLONING ARTIFACT SEQADV 1P28 ASN B -1 UNP Q8MTC1 ALA 18 CLONING ARTIFACT SEQADV 1P28 SER B 0 UNP Q8MTC1 ASP 19 CLONING ARTIFACT SEQRES 1 A 129 MET ASP ILE GLY ILE ASN SER ASP PRO ASN SER SER THR SEQRES 2 A 129 GLN SER TYR LYS ASP ALA MET GLY PRO LEU VAL ARG GLU SEQRES 3 A 129 CYS MET GLY SER VAL SER ALA THR GLU ASP ASP PHE LYS SEQRES 4 A 129 THR VAL LEU ASN ARG ASN PRO LEU GLU SER ARG THR ALA SEQRES 5 A 129 GLN CYS LEU LEU ALA CYS ALA LEU ASP LYS VAL GLY LEU SEQRES 6 A 129 ILE SER PRO GLU GLY ALA ILE TYR THR GLY ASP ASP LEU SEQRES 7 A 129 MET PRO VAL MET ASN ARG LEU TYR GLY PHE ASN ASP PHE SEQRES 8 A 129 LYS THR VAL MET LYS ALA LYS ALA VAL ASN ASP CYS ALA SEQRES 9 A 129 ASN GLN VAL ASN GLY ALA TYR PRO ASP ARG CYS ASP LEU SEQRES 10 A 129 ILE LYS ASN PHE THR ASP CYS VAL ARG ASN SER TYR SEQRES 1 B 129 MET ASP ILE GLY ILE ASN SER ASP PRO ASN SER SER THR SEQRES 2 B 129 GLN SER TYR LYS ASP ALA MET GLY PRO LEU VAL ARG GLU SEQRES 3 B 129 CYS MET GLY SER VAL SER ALA THR GLU ASP ASP PHE LYS SEQRES 4 B 129 THR VAL LEU ASN ARG ASN PRO LEU GLU SER ARG THR ALA SEQRES 5 B 129 GLN CYS LEU LEU ALA CYS ALA LEU ASP LYS VAL GLY LEU SEQRES 6 B 129 ILE SER PRO GLU GLY ALA ILE TYR THR GLY ASP ASP LEU SEQRES 7 B 129 MET PRO VAL MET ASN ARG LEU TYR GLY PHE ASN ASP PHE SEQRES 8 B 129 LYS THR VAL MET LYS ALA LYS ALA VAL ASN ASP CYS ALA SEQRES 9 B 129 ASN GLN VAL ASN GLY ALA TYR PRO ASP ARG CYS ASP LEU SEQRES 10 B 129 ILE LYS ASN PHE THR ASP CYS VAL ARG ASN SER TYR HET HBS A1001 6 HET HBR A1002 6 HET HBS B1003 6 HET HBR B1004 6 HETNAM HBS S,3-HYDROXYBUTAN-2-ONE HETNAM HBR R,3-HYDROXYBUTAN-2-ONE FORMUL 3 HBS 2(C4 H8 O2) FORMUL 4 HBR 2(C4 H8 O2) FORMUL 7 HOH *236(H2 O) HELIX 1 1 ASN A -1 MET A 17 1 19 HELIX 2 2 GLY A 18 SER A 21 5 4 HELIX 3 3 THR A 23 ASN A 32 1 10 HELIX 4 4 SER A 38 GLY A 53 1 16 HELIX 5 5 THR A 63 ASP A 66 5 4 HELIX 6 6 LEU A 67 TYR A 75 1 9 HELIX 7 7 ASP A 79 ASN A 97 1 19 HELIX 8 8 ASP A 102 ASN A 116 1 15 HELIX 9 9 THR B 2 GLY B 18 1 17 HELIX 10 10 THR B 23 ASN B 32 1 10 HELIX 11 11 SER B 38 GLY B 53 1 16 HELIX 12 12 THR B 63 ASP B 66 5 4 HELIX 13 13 LEU B 67 TYR B 75 1 9 HELIX 14 14 ASP B 79 ASN B 97 1 19 HELIX 15 15 ASP B 102 ASN B 116 1 15 SSBOND 1 CYS A 16 CYS A 47 1555 1555 2.05 SSBOND 2 CYS A 43 CYS A 104 1555 1555 2.05 SSBOND 3 CYS A 92 CYS A 113 1555 1555 2.10 SSBOND 4 CYS B 16 CYS B 47 1555 1555 2.09 SSBOND 5 CYS B 43 CYS B 104 1555 1555 2.03 SSBOND 6 CYS B 92 CYS B 113 1555 1555 2.06 SITE 1 AC1 5 TYR A 5 LEU A 49 TYR A 75 LYS A 85 SITE 2 AC1 5 PHE A 110 SITE 1 AC2 3 TYR A 5 TYR A 75 LYS A 85 SITE 1 AC3 2 TYR B 5 TYR B 75 SITE 1 AC4 4 TYR B 5 PHE B 110 THR B 111 HOH B1107 CRYST1 38.217 62.210 45.117 90.00 92.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026166 0.000000 0.001127 0.00000 SCALE2 0.000000 0.016075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022185 0.00000