HEADER VIRAL PROTEIN 16-APR-03 1P30 TITLE REFINEMENT OF ADENOVIRUS TYPE 5 HEXON WITH CNS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LATE PROTEIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 3 ORGANISM_TAXID: 28285 KEYWDS ADENOVIRUS, TYPE 5, HEXON, VIRUS, JELLYROLL, COAT PROTEIN, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.J.RUX,P.R.KUSER,R.M.BURNETT REVDAT 5 16-AUG-23 1P30 1 REMARK REVDAT 4 11-OCT-17 1P30 1 REMARK REVDAT 3 13-JUL-11 1P30 1 VERSN REVDAT 2 24-FEB-09 1P30 1 VERSN REVDAT 1 11-NOV-03 1P30 0 SPRSDE 11-NOV-03 1P30 1RUX JRNL AUTH J.J.RUX,P.R.KUSER,R.M.BURNETT JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSIS OF ADENOVIRUS HEXONS BY JRNL TITL 2 USE OF HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC, MOLECULAR JRNL TITL 3 MODELING, AND SEQUENCE-BASED METHODS JRNL REF J.VIROL. V. 77 9553 2003 JRNL REFN ISSN 0022-538X JRNL PMID 12915569 JRNL DOI 10.1128/JVI.77.17.9553-9566.2003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.J.RUX,R.M.BURNETT REMARK 1 TITL TYPE-SPECIFIC EPITOPE LOCATIONS REVEALED BY X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDY OF ADENOVIRUS TYPE 5 HEXON. REMARK 1 REF MOL.THER. V. 1 18 2000 REMARK 1 REFN ISSN 1525-0016 REMARK 1 DOI 10.1006/MTHE.1999.0001 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.K.ATHAPPILLY,R.MURALI,J.J.RUX,Z.CAI,R.M.BURNETT REMARK 1 TITL THE REFINED CRYSTAL STRUCTURE OF HEXON, THE MAJOR COAT REMARK 1 TITL 2 PROTEIN OF ADENOVIRUS TYPE 2, AT 2.9 A RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 242 430 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1593 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.J.RUX,D.PASCOLINI,R.M.BURNETT REMARK 1 TITL LARGE-SCALE PURIFICATION AND CRYSTALLIZATION OF ADENOVIRUS REMARK 1 TITL 2 HEXON REMARK 1 REF ADENOVIRUS METHODS AND V. 21 259 1999 REMARK 1 REF 2 PROTOCOLS (IN: METHODS IN REMARK 1 REF 3 MOLECULAR MEDICINE, V.21) REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 36549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4478 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.310 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.060 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 40.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 3.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE-MIRROR FOCUSING SYSTEM REMARK 200 (SUPPER) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HARVARD DATA COLLECTION SYSTEM REMARK 200 FOR X-RAY AREA DETECTORS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9 REMARK 200 STARTING MODEL: PDB ENTRY 1RUX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 SODIUM CITRATE , PH 3.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 75.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED BY THE REMARK 300 OPERATIONS Z, X, Y AND Y, Z, X. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 48550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 GLU A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 LEU A 141 REMARK 465 GLU A 142 REMARK 465 ILE A 143 REMARK 465 ASN A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 465 ASP A 151 REMARK 465 ASN A 152 REMARK 465 GLU A 153 REMARK 465 ASP A 154 REMARK 465 GLU A 155 REMARK 465 VAL A 156 REMARK 465 ASP A 157 REMARK 465 GLU A 158 REMARK 465 GLN A 159 REMARK 465 ALA A 160 REMARK 465 GLU A 161 REMARK 465 GLN A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 LYS A 251 REMARK 465 GLN A 252 REMARK 465 GLN A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 ALA A 271 REMARK 465 THR A 272 REMARK 465 ALA A 273 REMARK 465 GLY A 274 REMARK 465 ASN A 275 REMARK 465 GLY A 276 REMARK 465 ASP A 277 REMARK 465 ASN A 278 REMARK 465 LYS A 431 REMARK 465 THR A 432 REMARK 465 GLY A 433 REMARK 465 GLN A 434 REMARK 465 GLU A 435 REMARK 465 ASN A 436 REMARK 465 THR A 443 REMARK 465 GLU A 444 REMARK 465 GLY A 947 REMARK 465 ASN A 948 REMARK 465 ALA A 949 REMARK 465 THR A 950 REMARK 465 THR A 951 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 5 CG SD CE REMARK 470 MET A 6 CG SD CE REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 SER A 208 OG REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 THR A 213 OG1 CG2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 ILE A 215 CG1 CG2 CD1 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 THR A 280 OG1 CG2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 SER A 340 OG REMARK 470 SER A 352 OG REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 SER A 446 OG REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 685 CG CD CE NZ REMARK 470 SER A 747 OG REMARK 470 ASP A 749 CG OD1 OD2 REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 811 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 739 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 6 -62.52 -12.73 REMARK 500 PRO A 114 39.29 -73.23 REMARK 500 LYS A 126 -4.82 -57.81 REMARK 500 PHE A 199 -2.27 -147.48 REMARK 500 GLU A 214 92.99 68.17 REMARK 500 GLN A 353 -14.20 62.41 REMARK 500 ASN A 421 56.82 -92.39 REMARK 500 LYS A 440 -178.56 -55.52 REMARK 500 CYS A 515 -5.65 -57.34 REMARK 500 ASN A 518 50.98 38.40 REMARK 500 ASP A 603 31.48 -86.21 REMARK 500 ASN A 658 -4.42 69.65 REMARK 500 SER A 668 123.11 -35.07 REMARK 500 THR A 699 54.22 -116.50 REMARK 500 TYR A 712 14.88 -155.28 REMARK 500 SER A 727 -34.20 -176.12 REMARK 500 VAL A 748 -55.33 39.27 REMARK 500 ALA A 756 18.98 51.63 REMARK 500 ASP A 788 71.83 -101.86 REMARK 500 PRO A 833 39.56 -82.34 REMARK 500 TYR A 841 147.39 176.90 REMARK 500 CYS A 865 71.94 -160.13 REMARK 500 PHE A 878 -3.08 67.52 REMARK 500 ASP A 910 33.52 -75.82 REMARK 500 PRO A 943 -166.93 -68.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RUX RELATED DB: PDB REMARK 900 EARLIER STRUCTURE OF THE SAME PROTEIN. REMARK 900 RELATED ID: 1P2Z RELATED DB: PDB REMARK 900 CURRENT MODEL OF THE CLOSELY RELATED HUMAN ADENOVIRUS TYPE 2 HEXON. REMARK 900 RELATED ID: 1DHX RELATED DB: PDB REMARK 900 EARLIER STRUCTURE OF THE CLOSELY RELATED HUMAN ADENOVIRUS TYPE 2 REMARK 900 HEXON. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS ACETYLATED AT THE N-TERMINUS. DBREF 1P30 A 1 951 UNP P04133 HEX_ADE05 1 951 SEQRES 1 A 951 ALA THR PRO SER MET MET PRO GLN TRP SER TYR MET HIS SEQRES 2 A 951 ILE SER GLY GLN ASP ALA SER GLU TYR LEU SER PRO GLY SEQRES 3 A 951 LEU VAL GLN PHE ALA ARG ALA THR GLU THR TYR PHE SER SEQRES 4 A 951 LEU ASN ASN LYS PHE ARG ASN PRO THR VAL ALA PRO THR SEQRES 5 A 951 HIS ASP VAL THR THR ASP ARG SER GLN ARG LEU THR LEU SEQRES 6 A 951 ARG PHE ILE PRO VAL ASP ARG GLU ASP THR ALA TYR SER SEQRES 7 A 951 TYR LYS ALA ARG PHE THR LEU ALA VAL GLY ASP ASN ARG SEQRES 8 A 951 VAL LEU ASP MET ALA SER THR TYR PHE ASP ILE ARG GLY SEQRES 9 A 951 VAL LEU ASP ARG GLY PRO THR PHE LYS PRO TYR SER GLY SEQRES 10 A 951 THR ALA TYR ASN ALA LEU ALA PRO LYS GLY ALA PRO ASN SEQRES 11 A 951 PRO CYS GLU TRP ASP GLU ALA ALA THR ALA LEU GLU ILE SEQRES 12 A 951 ASN LEU GLU GLU GLU ASP ASP ASP ASN GLU ASP GLU VAL SEQRES 13 A 951 ASP GLU GLN ALA GLU GLN GLN LYS THR HIS VAL PHE GLY SEQRES 14 A 951 GLN ALA PRO TYR SER GLY ILE ASN ILE THR LYS GLU GLY SEQRES 15 A 951 ILE GLN ILE GLY VAL GLU GLY GLN THR PRO LYS TYR ALA SEQRES 16 A 951 ASP LYS THR PHE GLN PRO GLU PRO GLN ILE GLY GLU SER SEQRES 17 A 951 GLN TRP TYR GLU THR GLU ILE ASN HIS ALA ALA GLY ARG SEQRES 18 A 951 VAL LEU LYS LYS THR THR PRO MET LYS PRO CYS TYR GLY SEQRES 19 A 951 SER TYR ALA LYS PRO THR ASN GLU ASN GLY GLY GLN GLY SEQRES 20 A 951 ILE LEU VAL LYS GLN GLN ASN GLY LYS LEU GLU SER GLN SEQRES 21 A 951 VAL GLU MET GLN PHE PHE SER THR THR GLU ALA THR ALA SEQRES 22 A 951 GLY ASN GLY ASP ASN LEU THR PRO LYS VAL VAL LEU TYR SEQRES 23 A 951 SER GLU ASP VAL ASP ILE GLU THR PRO ASP THR HIS ILE SEQRES 24 A 951 SER TYR MET PRO THR ILE LYS GLU GLY ASN SER ARG GLU SEQRES 25 A 951 LEU MET GLY GLN GLN SER MET PRO ASN ARG PRO ASN TYR SEQRES 26 A 951 ILE ALA PHE ARG ASP ASN PHE ILE GLY LEU MET TYR TYR SEQRES 27 A 951 ASN SER THR GLY ASN MET GLY VAL LEU ALA GLY GLN ALA SEQRES 28 A 951 SER GLN LEU ASN ALA VAL VAL ASP LEU GLN ASP ARG ASN SEQRES 29 A 951 THR GLU LEU SER TYR GLN LEU LEU LEU ASP SER ILE GLY SEQRES 30 A 951 ASP ARG THR ARG TYR PHE SER MET TRP ASN GLN ALA VAL SEQRES 31 A 951 ASP SER TYR ASP PRO ASP VAL ARG ILE ILE GLU ASN HIS SEQRES 32 A 951 GLY THR GLU ASP GLU LEU PRO ASN TYR CYS PHE PRO LEU SEQRES 33 A 951 GLY GLY VAL ILE ASN THR GLU THR LEU THR LYS VAL LYS SEQRES 34 A 951 PRO LYS THR GLY GLN GLU ASN GLY TRP GLU LYS ASP ALA SEQRES 35 A 951 THR GLU PHE SER ASP LYS ASN GLU ILE ARG VAL GLY ASN SEQRES 36 A 951 ASN PHE ALA MET GLU ILE ASN LEU ASN ALA ASN LEU TRP SEQRES 37 A 951 ARG ASN PHE LEU TYR SER ASN ILE ALA LEU TYR LEU PRO SEQRES 38 A 951 ASP LYS LEU LYS TYR SER PRO SER ASN VAL LYS ILE SER SEQRES 39 A 951 ASP ASN PRO ASN THR TYR ASP TYR MET ASN LYS ARG VAL SEQRES 40 A 951 VAL ALA PRO GLY LEU VAL ASP CYS TYR ILE ASN LEU GLY SEQRES 41 A 951 ALA ARG TRP SER LEU ASP TYR MET ASP ASN VAL ASN PRO SEQRES 42 A 951 PHE ASN HIS HIS ARG ASN ALA GLY LEU ARG TYR ARG SER SEQRES 43 A 951 MET LEU LEU GLY ASN GLY ARG TYR VAL PRO PHE HIS ILE SEQRES 44 A 951 GLN VAL PRO GLN LYS PHE PHE ALA ILE LYS ASN LEU LEU SEQRES 45 A 951 LEU LEU PRO GLY SER TYR THR TYR GLU TRP ASN PHE ARG SEQRES 46 A 951 LYS ASP VAL ASN MET VAL LEU GLN SER SER LEU GLY ASN SEQRES 47 A 951 ASP LEU ARG VAL ASP GLY ALA SER ILE LYS PHE ASP SER SEQRES 48 A 951 ILE CYS LEU TYR ALA THR PHE PHE PRO MET ALA HIS ASN SEQRES 49 A 951 THR ALA SER THR LEU GLU ALA MET LEU ARG ASN ASP THR SEQRES 50 A 951 ASN ASP GLN SER PHE ASN ASP TYR LEU SER ALA ALA ASN SEQRES 51 A 951 MET LEU TYR PRO ILE PRO ALA ASN ALA THR ASN VAL PRO SEQRES 52 A 951 ILE SER ILE PRO SER ARG ASN TRP ALA ALA PHE ARG GLY SEQRES 53 A 951 TRP ALA PHE THR ARG LEU LYS THR LYS GLU THR PRO SER SEQRES 54 A 951 LEU GLY SER GLY TYR ASP PRO TYR TYR THR TYR SER GLY SEQRES 55 A 951 SER ILE PRO TYR LEU ASP GLY THR PHE TYR LEU ASN HIS SEQRES 56 A 951 THR PHE LYS LYS VAL ALA ILE THR PHE ASP SER SER VAL SEQRES 57 A 951 SER TRP PRO GLY ASN ASP ARG LEU LEU THR PRO ASN GLU SEQRES 58 A 951 PHE GLU ILE LYS ARG SER VAL ASP GLY GLU GLY TYR ASN SEQRES 59 A 951 VAL ALA GLN CYS ASN MET THR LYS ASP TRP PHE LEU VAL SEQRES 60 A 951 GLN MET LEU ALA ASN TYR ASN ILE GLY TYR GLN GLY PHE SEQRES 61 A 951 TYR ILE PRO GLU SER TYR LYS ASP ARG MET TYR SER PHE SEQRES 62 A 951 PHE ARG ASN PHE GLN PRO MET SER ARG GLN VAL VAL ASP SEQRES 63 A 951 ASP THR LYS TYR LYS ASP TYR GLN GLN VAL GLY ILE LEU SEQRES 64 A 951 HIS GLN HIS ASN ASN SER GLY PHE VAL GLY TYR LEU ALA SEQRES 65 A 951 PRO THR MET ARG GLU GLY GLN ALA TYR PRO ALA ASN PHE SEQRES 66 A 951 PRO TYR PRO LEU ILE GLY LYS THR ALA VAL ASP SER ILE SEQRES 67 A 951 THR GLN LYS LYS PHE LEU CYS ASP ARG THR LEU TRP ARG SEQRES 68 A 951 ILE PRO PHE SER SER ASN PHE MET SER MET GLY ALA LEU SEQRES 69 A 951 THR ASP LEU GLY GLN ASN LEU LEU TYR ALA ASN SER ALA SEQRES 70 A 951 HIS ALA LEU ASP MET THR PHE GLU VAL ASP PRO MET ASP SEQRES 71 A 951 GLU PRO THR LEU LEU TYR VAL LEU PHE GLU VAL PHE ASP SEQRES 72 A 951 VAL VAL ARG VAL HIS ARG PRO HIS ARG GLY VAL ILE GLU SEQRES 73 A 951 THR VAL TYR LEU ARG THR PRO PHE SER ALA GLY ASN ALA SEQRES 74 A 951 THR THR FORMUL 2 HOH *304(H2 O) HELIX 1 1 MET A 5 MET A 12 1 8 HELIX 2 2 ASP A 18 LEU A 23 1 6 HELIX 3 3 SER A 24 GLU A 35 1 12 HELIX 4 4 LEU A 40 PHE A 44 5 5 HELIX 5 5 SER A 310 GLN A 316 5 7 HELIX 6 6 ASP A 330 ILE A 333 5 4 HELIX 7 7 SER A 340 MET A 344 5 5 HELIX 8 8 ASN A 364 GLY A 377 1 14 HELIX 9 9 PHE A 383 ASN A 387 5 5 HELIX 10 10 ASP A 394 ILE A 399 1 6 HELIX 11 11 ASN A 462 ILE A 476 1 15 HELIX 12 12 ALA A 477 LEU A 480 5 4 HELIX 13 13 PRO A 481 LYS A 485 5 5 HELIX 14 14 THR A 499 ARG A 506 1 8 HELIX 15 15 ALA A 509 ASP A 514 5 6 HELIX 16 16 LEU A 525 ASN A 530 1 6 HELIX 17 17 ASN A 539 GLY A 550 1 12 HELIX 18 18 ASP A 587 VAL A 591 1 5 HELIX 19 19 ALA A 622 ARG A 634 1 13 HELIX 20 20 ASN A 635 ASP A 639 5 5 HELIX 21 21 LYS A 685 THR A 687 5 3 HELIX 22 22 ILE A 704 GLY A 709 1 6 HELIX 23 23 LEU A 713 HIS A 715 5 3 HELIX 24 24 GLY A 750 ASN A 754 5 5 HELIX 25 25 THR A 761 ASN A 774 1 14 HELIX 26 26 GLU A 784 ASP A 788 5 5 HELIX 27 27 SER A 792 ASN A 796 1 5 HELIX 28 28 GLY A 817 GLN A 821 5 5 HELIX 29 29 ASP A 886 GLN A 889 5 4 HELIX 30 30 ASN A 890 ASN A 895 1 6 SHEET 1 A 4 THR A 64 PHE A 67 0 SHEET 2 A 4 SER A 606 THR A 617 -1 O ALA A 616 N LEU A 65 SHEET 3 A 4 THR A 98 ASP A 107 -1 N ASP A 107 O SER A 606 SHEET 4 A 4 TYR A 554 VAL A 561 -1 O VAL A 555 N LEU A 106 SHEET 1 B 4 ASP A 71 ASP A 74 0 SHEET 2 B 4 SER A 78 VAL A 87 -1 O ARG A 82 N ASP A 71 SHEET 3 B 4 GLY A 576 ARG A 585 -1 O TYR A 578 N LEU A 85 SHEET 4 B 4 VAL A 346 GLY A 349 -1 N ALA A 348 O THR A 579 SHEET 1 C 2 LEU A 93 ASP A 94 0 SHEET 2 C 2 LEU A 572 LEU A 573 -1 O LEU A 573 N LEU A 93 SHEET 1 D 2 CYS A 132 TRP A 134 0 SHEET 2 D 2 HIS A 166 PHE A 168 -1 O HIS A 166 N TRP A 134 SHEET 1 E 4 TYR A 173 SER A 174 0 SHEET 2 E 4 ALA A 218 LEU A 223 -1 O ALA A 219 N TYR A 173 SHEET 3 E 4 VAL A 283 GLU A 288 1 O TYR A 286 N GLY A 220 SHEET 4 E 4 GLU A 262 PHE A 266 -1 N PHE A 266 O VAL A 283 SHEET 1 F 3 ILE A 178 THR A 179 0 SHEET 2 F 3 GLY A 182 GLU A 188 -1 O GLY A 182 N THR A 179 SHEET 3 F 3 THR A 191 TYR A 194 -1 O LYS A 193 N GLY A 186 SHEET 1 G 2 TYR A 236 ALA A 237 0 SHEET 2 G 2 ILE A 292 GLU A 293 -1 O GLU A 293 N TYR A 236 SHEET 1 H 2 THR A 297 TYR A 301 0 SHEET 2 H 2 GLN A 317 PRO A 320 -1 O MET A 319 N HIS A 298 SHEET 1 I 2 ILE A 326 PHE A 328 0 SHEET 2 I 2 LEU A 592 SER A 594 -1 O GLN A 593 N ALA A 327 SHEET 1 J 2 ILE A 400 GLU A 401 0 SHEET 2 J 2 ARG A 522 TRP A 523 -1 O TRP A 523 N ILE A 400 SHEET 1 K 2 TYR A 412 CYS A 413 0 SHEET 2 K 2 MET A 459 GLU A 460 -1 O MET A 459 N CYS A 413 SHEET 1 L 2 GLU A 423 LEU A 425 0 SHEET 2 L 2 ASN A 449 ILE A 451 -1 O ILE A 451 N GLU A 423 SHEET 1 M 2 VAL A 428 LYS A 429 0 SHEET 2 M 2 GLU A 439 LYS A 440 -1 O GLU A 439 N LYS A 429 SHEET 1 N 3 GLN A 640 ASN A 643 0 SHEET 2 N 3 PHE A 922 HIS A 928 -1 O VAL A 927 N GLN A 640 SHEET 3 N 3 GLU A 936 THR A 942 -1 O GLU A 936 N HIS A 928 SHEET 1 O 4 ALA A 648 ILE A 655 0 SHEET 2 O 4 THR A 913 GLU A 920 -1 O LEU A 915 N TYR A 653 SHEET 3 O 4 GLY A 676 LYS A 683 -1 N ALA A 678 O LEU A 918 SHEET 4 O 4 TRP A 870 PRO A 873 -1 O ILE A 872 N TRP A 677 SHEET 1 P 4 ASN A 661 ARG A 669 0 SHEET 2 P 4 HIS A 898 VAL A 906 -1 O MET A 902 N ILE A 664 SHEET 3 P 4 PHE A 717 PHE A 724 -1 N THR A 723 O ASP A 901 SHEET 4 P 4 VAL A 728 TRP A 730 -1 O VAL A 728 N PHE A 724 SHEET 1 Q 4 ASN A 661 ARG A 669 0 SHEET 2 Q 4 HIS A 898 VAL A 906 -1 O MET A 902 N ILE A 664 SHEET 3 Q 4 PHE A 717 PHE A 724 -1 N THR A 723 O ASP A 901 SHEET 4 Q 4 PHE A 742 GLU A 743 -1 O PHE A 742 N VAL A 720 SHEET 1 R 2 PHE A 797 VAL A 805 0 SHEET 2 R 2 SER A 857 CYS A 865 -1 O LYS A 862 N MET A 800 CISPEP 1 GLN A 200 PRO A 201 0 -0.30 CISPEP 2 TRP A 730 PRO A 731 0 0.20 CISPEP 3 PHE A 845 PRO A 846 0 -0.15 CISPEP 4 THR A 942 PRO A 943 0 -0.32 CRYST1 150.700 150.700 150.700 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006636 0.00000