HEADER LIGASE 17-APR-03 1P3D TITLE CRYSTAL STRUCTURE OF UDP-N-ACETYLMURAMIC ACID:L-ALANINE LIGASE (MURC) TITLE 2 IN COMPLEX WITH UMA AND ANP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMATE--ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE; COMPND 5 EC: 6.3.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: MURC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSX29 KEYWDS ALPHA/BETA PROTEIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.MOL,A.BROOUN,D.R.DOUGAN,M.T.HILGERS,L.W.TARI,R.A.WIJNANDS, AUTHOR 2 M.W.KNUTH,D.E.MCREE,R.V.SWANSON REVDAT 5 30-OCT-24 1P3D 1 REMARK REVDAT 4 15-NOV-23 1P3D 1 REMARK REVDAT 3 16-AUG-23 1P3D 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1P3D 1 VERSN REVDAT 1 15-JUL-03 1P3D 0 JRNL AUTH C.D.MOL,A.BROOUN,D.R.DOUGAN,M.T.HILGERS,L.W.TARI, JRNL AUTH 2 R.A.WIJNANDS,M.W.KNUTH,D.E.MCREE,R.V.SWANSON JRNL TITL CRYSTAL STRUCTURES OF ACTIVE FULLY ASSEMBLED SUBSTRATE- AND JRNL TITL 2 PRODUCT-BOUND COMPLEXES OF UDP-N-ACETYLMURAMIC JRNL TITL 3 ACID:L-ALANINE LIGASE (MURC) FROM HAEMOPHILUS INFLUENZAE. JRNL REF J.BACTERIOL. V. 185 4152 2003 JRNL REFN ISSN 0021-9193 JRNL PMID 12837790 JRNL DOI 10.1128/JB.185.14.4152-4162.2003 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 107740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 378 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 791 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : 1.40000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7390 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10034 ; 1.129 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 921 ; 5.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1148 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5515 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3777 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 796 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4578 ; 0.333 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7360 ; 0.642 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2812 ; 1.377 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2674 ; 2.107 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6560 -1.4440 61.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.3012 REMARK 3 T33: 0.1396 T12: 0.0098 REMARK 3 T13: -0.0016 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.2953 L22: 1.8397 REMARK 3 L33: 2.4143 L12: -0.6477 REMARK 3 L13: 0.0878 L23: -0.4081 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.3535 S13: 0.0190 REMARK 3 S21: 0.1329 S22: -0.0302 S23: -0.2661 REMARK 3 S31: 0.0336 S32: 0.5105 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5250 3.8440 37.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.0842 REMARK 3 T33: 0.0893 T12: 0.0023 REMARK 3 T13: -0.0042 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.4192 L22: 1.1248 REMARK 3 L33: 2.5431 L12: 0.1827 REMARK 3 L13: 0.0815 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.0915 S13: 0.0440 REMARK 3 S21: -0.2509 S22: 0.0336 S23: 0.1047 REMARK 3 S31: -0.1728 S32: 0.0185 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 473 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6760 -4.9970 28.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.5276 REMARK 3 T33: 0.1669 T12: -0.0081 REMARK 3 T13: 0.0800 T23: -0.1347 REMARK 3 L TENSOR REMARK 3 L11: 2.6549 L22: 2.6922 REMARK 3 L33: 3.1698 L12: -0.1888 REMARK 3 L13: 0.0242 L23: 0.3755 REMARK 3 S TENSOR REMARK 3 S11: 0.1298 S12: 0.5243 S13: -0.0560 REMARK 3 S21: -0.2645 S22: 0.1374 S23: -0.3661 REMARK 3 S31: -0.2085 S32: 0.9315 S33: -0.2673 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5430 89.2940 54.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.1922 REMARK 3 T33: 0.1826 T12: 0.0280 REMARK 3 T13: -0.0107 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 5.1881 L22: 2.1870 REMARK 3 L33: 2.1658 L12: 0.4720 REMARK 3 L13: 0.3410 L23: -0.3233 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.5250 S13: 0.1779 REMARK 3 S21: -0.2225 S22: 0.0976 S23: 0.3875 REMARK 3 S31: -0.0236 S32: -0.3295 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 324 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4180 83.4800 77.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0379 REMARK 3 T33: 0.1110 T12: 0.0162 REMARK 3 T13: 0.0208 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.4338 L22: 0.8487 REMARK 3 L33: 1.7714 L12: -0.0022 REMARK 3 L13: -0.5376 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.1185 S13: -0.0871 REMARK 3 S21: 0.1368 S22: -0.0224 S23: -0.0120 REMARK 3 S31: 0.0641 S32: 0.2765 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 325 B 473 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4390 74.3390 83.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.0026 REMARK 3 T33: 0.2094 T12: 0.0193 REMARK 3 T13: 0.0808 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.0368 L22: 2.4521 REMARK 3 L33: 1.6864 L12: 0.6370 REMARK 3 L13: -0.7308 L23: -0.0807 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.0219 S13: 0.1884 REMARK 3 S21: 0.1370 S22: -0.0365 S23: 0.3507 REMARK 3 S31: -0.0155 S32: -0.1446 S33: -0.0357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.310 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P31 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ISOPROPANOL, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.66400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 474 REMARK 465 ASN A 475 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 ILE B 11 REMARK 465 ILE B 12 REMARK 465 PRO B 13 REMARK 465 LYS B 474 REMARK 465 ASN B 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 368 CZ ARG A 368 NH2 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 386 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 415 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 344 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 327 57.71 38.21 REMARK 500 ARG A 377 141.21 78.45 REMARK 500 ALA B 179 15.65 58.98 REMARK 500 PHE B 327 61.01 38.14 REMARK 500 ARG B 377 140.87 79.25 REMARK 500 LYS B 428 -116.04 -104.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 605 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 130 OG1 REMARK 620 2 GLU A 173 OE2 90.8 REMARK 620 3 ANP A 603 O1B 86.1 95.1 REMARK 620 4 ANP A 603 O1G 173.6 93.2 88.6 REMARK 620 5 HOH A 983 O 88.4 178.0 86.8 87.7 REMARK 620 6 HOH A 984 O 85.7 90.4 170.2 99.3 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 198 NE2 REMARK 620 2 ANP A 603 O3G 175.6 REMARK 620 3 HOH A 978 O 94.4 87.9 REMARK 620 4 HOH A 979 O 87.5 88.6 95.7 REMARK 620 5 HOH A 980 O 88.8 89.6 170.5 93.5 REMARK 620 6 HOH A 981 O 95.1 88.9 84.0 177.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1605 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 130 OG1 REMARK 620 2 GLU B 173 OE2 91.4 REMARK 620 3 HOH B 976 O 90.2 176.9 REMARK 620 4 HOH B 977 O 87.3 95.1 82.5 REMARK 620 5 ANP B1603 O1B 88.4 94.5 88.1 169.6 REMARK 620 6 ANP B1603 O1G 175.3 92.6 85.8 94.7 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 198 NE2 REMARK 620 2 HOH B 972 O 87.6 REMARK 620 3 HOH B 973 O 91.4 87.1 REMARK 620 4 HOH B 974 O 96.0 167.5 80.9 REMARK 620 5 UMA B1602 O18 87.3 98.7 174.0 93.4 REMARK 620 6 ANP B1603 O3G 177.9 91.3 90.3 85.4 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMA B 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P31 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UDP-N-ACETYLMURAMIC ACID:L-ALANINE LIGASE REMARK 900 (MURC) IN COMPLEX WITH UNAM DBREF 1P3D A 1 475 UNP P45066 MURC_HAEIN 1 475 DBREF 1P3D B 1 475 UNP P45066 MURC_HAEIN 1 475 SEQADV 1P3D MSE A 1 UNP P45066 MET 1 MODIFIED RESIDUE SEQADV 1P3D MSE A 15 UNP P45066 MET 15 MODIFIED RESIDUE SEQADV 1P3D MSE A 31 UNP P45066 MET 31 MODIFIED RESIDUE SEQADV 1P3D MSE A 110 UNP P45066 MET 110 MODIFIED RESIDUE SEQADV 1P3D MSE A 115 UNP P45066 MET 115 MODIFIED RESIDUE SEQADV 1P3D MSE A 135 UNP P45066 MET 135 MODIFIED RESIDUE SEQADV 1P3D MSE A 138 UNP P45066 MET 138 MODIFIED RESIDUE SEQADV 1P3D MSE A 187 UNP P45066 MET 187 MODIFIED RESIDUE SEQADV 1P3D MSE A 194 UNP P45066 MET 194 MODIFIED RESIDUE SEQADV 1P3D MSE A 199 UNP P45066 MET 199 MODIFIED RESIDUE SEQADV 1P3D MSE A 209 UNP P45066 MET 209 MODIFIED RESIDUE SEQADV 1P3D MSE A 228 UNP P45066 MET 228 MODIFIED RESIDUE SEQADV 1P3D MSE A 236 UNP P45066 MET 236 MODIFIED RESIDUE SEQADV 1P3D MSE A 371 UNP P45066 MET 371 MODIFIED RESIDUE SEQADV 1P3D MSE A 400 UNP P45066 MET 400 MODIFIED RESIDUE SEQADV 1P3D MSE B 1 UNP P45066 MET 1 MODIFIED RESIDUE SEQADV 1P3D MSE B 15 UNP P45066 MET 15 MODIFIED RESIDUE SEQADV 1P3D MSE B 31 UNP P45066 MET 31 MODIFIED RESIDUE SEQADV 1P3D MSE B 110 UNP P45066 MET 110 MODIFIED RESIDUE SEQADV 1P3D MSE B 115 UNP P45066 MET 115 MODIFIED RESIDUE SEQADV 1P3D MSE B 135 UNP P45066 MET 135 MODIFIED RESIDUE SEQADV 1P3D MSE B 138 UNP P45066 MET 138 MODIFIED RESIDUE SEQADV 1P3D MSE B 187 UNP P45066 MET 187 MODIFIED RESIDUE SEQADV 1P3D MSE B 194 UNP P45066 MET 194 MODIFIED RESIDUE SEQADV 1P3D MSE B 199 UNP P45066 MET 199 MODIFIED RESIDUE SEQADV 1P3D MSE B 209 UNP P45066 MET 209 MODIFIED RESIDUE SEQADV 1P3D MSE B 228 UNP P45066 MET 228 MODIFIED RESIDUE SEQADV 1P3D MSE B 236 UNP P45066 MET 236 MODIFIED RESIDUE SEQADV 1P3D MSE B 371 UNP P45066 MET 371 MODIFIED RESIDUE SEQADV 1P3D MSE B 400 UNP P45066 MET 400 MODIFIED RESIDUE SEQRES 1 A 475 MSE LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 A 475 GLU MSE ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 A 475 GLY GLY ALA GLY MSE SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 A 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 A 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 A 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 A 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 A 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 A 475 ILE GLN ARG ALA GLN MSE LEU ALA GLU ILE MSE ARG PHE SEQRES 10 A 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 A 475 THR THR THR ALA MSE ILE SER MSE ILE TYR THR GLN ALA SEQRES 12 A 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 A 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 A 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 A 475 HIS LEU GLN PRO MSE VAL SER VAL VAL THR ASN MSE GLU SEQRES 16 A 475 PRO ASP HIS MSE ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 A 475 MSE LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 A 475 PHE TYR GLY LEU ALA VAL MSE CYS ALA ASP ASP PRO VAL SEQRES 19 A 475 LEU MSE GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 A 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 A 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 A 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 A 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 A 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 A 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 A 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 A 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 A 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 A 475 GLY ASP LYS ARG ILE VAL MSE ILE PHE GLN PRO HIS ARG SEQRES 30 A 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 A 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MSE LEU ASP VAL SEQRES 32 A 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 A 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 A 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 A 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 A 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 A 475 LEU ALA GLU SER TRP LYS ASN SEQRES 1 B 475 MSE LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 B 475 GLU MSE ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 B 475 GLY GLY ALA GLY MSE SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 B 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 B 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 B 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 B 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 B 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 B 475 ILE GLN ARG ALA GLN MSE LEU ALA GLU ILE MSE ARG PHE SEQRES 10 B 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 B 475 THR THR THR ALA MSE ILE SER MSE ILE TYR THR GLN ALA SEQRES 12 B 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 B 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 B 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 B 475 HIS LEU GLN PRO MSE VAL SER VAL VAL THR ASN MSE GLU SEQRES 16 B 475 PRO ASP HIS MSE ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 B 475 MSE LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 B 475 PHE TYR GLY LEU ALA VAL MSE CYS ALA ASP ASP PRO VAL SEQRES 19 B 475 LEU MSE GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 B 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 B 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 B 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 B 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 B 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 B 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 B 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 B 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 B 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 B 475 GLY ASP LYS ARG ILE VAL MSE ILE PHE GLN PRO HIS ARG SEQRES 30 B 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 B 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MSE LEU ASP VAL SEQRES 32 B 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 B 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 B 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 B 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 B 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 B 475 LEU ALA GLU SER TRP LYS ASN MODRES 1P3D MSE A 15 MET SELENOMETHIONINE MODRES 1P3D MSE A 31 MET SELENOMETHIONINE MODRES 1P3D MSE A 110 MET SELENOMETHIONINE MODRES 1P3D MSE A 115 MET SELENOMETHIONINE MODRES 1P3D MSE A 135 MET SELENOMETHIONINE MODRES 1P3D MSE A 138 MET SELENOMETHIONINE MODRES 1P3D MSE A 187 MET SELENOMETHIONINE MODRES 1P3D MSE A 194 MET SELENOMETHIONINE MODRES 1P3D MSE A 199 MET SELENOMETHIONINE MODRES 1P3D MSE A 209 MET SELENOMETHIONINE MODRES 1P3D MSE A 228 MET SELENOMETHIONINE MODRES 1P3D MSE A 236 MET SELENOMETHIONINE MODRES 1P3D MSE A 371 MET SELENOMETHIONINE MODRES 1P3D MSE A 400 MET SELENOMETHIONINE MODRES 1P3D MSE B 15 MET SELENOMETHIONINE MODRES 1P3D MSE B 31 MET SELENOMETHIONINE MODRES 1P3D MSE B 110 MET SELENOMETHIONINE MODRES 1P3D MSE B 115 MET SELENOMETHIONINE MODRES 1P3D MSE B 135 MET SELENOMETHIONINE MODRES 1P3D MSE B 138 MET SELENOMETHIONINE MODRES 1P3D MSE B 187 MET SELENOMETHIONINE MODRES 1P3D MSE B 194 MET SELENOMETHIONINE MODRES 1P3D MSE B 199 MET SELENOMETHIONINE MODRES 1P3D MSE B 209 MET SELENOMETHIONINE MODRES 1P3D MSE B 228 MET SELENOMETHIONINE MODRES 1P3D MSE B 236 MET SELENOMETHIONINE MODRES 1P3D MSE B 371 MET SELENOMETHIONINE MODRES 1P3D MSE B 400 MET SELENOMETHIONINE HET MSE A 15 8 HET MSE A 31 8 HET MSE A 110 8 HET MSE A 115 8 HET MSE A 135 8 HET MSE A 138 8 HET MSE A 187 8 HET MSE A 194 8 HET MSE A 199 8 HET MSE A 209 8 HET MSE A 228 8 HET MSE A 236 8 HET MSE A 371 8 HET MSE A 400 8 HET MSE B 15 8 HET MSE B 31 8 HET MSE B 110 8 HET MSE B 115 8 HET MSE B 135 8 HET MSE B 138 8 HET MSE B 187 8 HET MSE B 194 8 HET MSE B 199 8 HET MSE B 209 8 HET MSE B 228 8 HET MSE B 236 8 HET MSE B 371 8 HET MSE B 400 8 HET MN A 604 1 HET MN A 605 1 HET UMA A 602 49 HET ANP A 603 31 HET MN B1604 1 HET MN B1605 1 HET UMA B1602 49 HET ANP B1603 31 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM UMA URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 1 MSE 28(C5 H11 N O2 SE) FORMUL 3 MN 4(MN 2+) FORMUL 5 UMA 2(C23 H36 N4 O20 P2) FORMUL 6 ANP 2(C10 H17 N6 O12 P3) FORMUL 11 HOH *791(H2 O) HELIX 1 1 GLY A 30 GLY A 42 1 13 HELIX 2 2 GLY A 53 ALA A 62 1 10 HELIX 3 3 ALA A 71 GLU A 76 5 6 HELIX 4 4 ASN A 91 LYS A 100 1 10 HELIX 5 5 ARG A 107 PHE A 117 1 11 HELIX 6 6 GLY A 128 ALA A 143 1 16 HELIX 7 7 ALA A 179 LEU A 184 5 6 HELIX 8 8 HIS A 198 GLU A 203 5 6 HELIX 9 9 ASP A 205 HIS A 218 1 14 HELIX 10 10 ASP A 232 GLY A 243 1 12 HELIX 11 11 GLY A 289 GLU A 306 1 18 HELIX 12 12 ALA A 309 ASP A 319 1 11 HELIX 13 13 HIS A 349 GLY A 365 1 17 HELIX 14 14 ARG A 377 LEU A 384 1 8 HELIX 15 15 LEU A 384 SER A 393 1 10 HELIX 16 16 ASP A 415 GLY A 427 1 13 HELIX 17 17 ASP A 436 SER A 438 5 3 HELIX 18 18 GLN A 439 ILE A 448 1 10 HELIX 19 19 SER A 461 TRP A 473 1 13 HELIX 20 20 GLY B 28 GLU B 41 1 14 HELIX 21 21 GLY B 53 ALA B 62 1 10 HELIX 22 22 ALA B 71 GLU B 76 5 6 HELIX 23 23 ASN B 91 LYS B 100 1 10 HELIX 24 24 ARG B 107 PHE B 117 1 11 HELIX 25 25 GLY B 128 ALA B 143 1 16 HELIX 26 26 ALA B 179 LEU B 184 5 6 HELIX 27 27 ASP B 205 HIS B 218 1 14 HELIX 28 28 ASP B 232 GLY B 243 1 12 HELIX 29 29 GLY B 289 GLU B 306 1 18 HELIX 30 30 ALA B 309 ASP B 319 1 11 HELIX 31 31 HIS B 349 TRP B 364 1 16 HELIX 32 32 ARG B 377 LEU B 384 1 8 HELIX 33 33 LEU B 384 SER B 393 1 10 HELIX 34 34 ASP B 415 ASN B 425 1 11 HELIX 35 35 ASP B 436 SER B 438 5 3 HELIX 36 36 GLN B 439 ILE B 448 1 10 HELIX 37 37 SER B 461 TRP B 473 1 13 SHEET 1 A 5 LYS A 65 ILE A 68 0 SHEET 2 A 5 GLN A 44 ASP A 49 1 N GLY A 47 O TYR A 67 SHEET 3 A 5 GLN A 20 ILE A 24 1 N PHE A 23 O SER A 48 SHEET 4 A 5 VAL A 80 VAL A 83 1 O VAL A 82 N HIS A 22 SHEET 5 A 5 VAL A 104 GLN A 106 1 O ILE A 105 N VAL A 81 SHEET 1 B10 ALA A 162 HIS A 163 0 SHEET 2 B10 THR A 148 VAL A 150 -1 N PHE A 149 O HIS A 163 SHEET 3 B10 TYR A 169 GLU A 173 1 O ILE A 171 N VAL A 150 SHEET 4 B10 HIS A 119 ALA A 124 1 N ILE A 121 O LEU A 170 SHEET 5 B10 VAL A 188 VAL A 191 1 O VAL A 190 N ALA A 122 SHEET 6 B10 LEU A 225 CYS A 229 1 O VAL A 227 N SER A 189 SHEET 7 B10 GLN A 245 GLY A 250 1 O ILE A 247 N ALA A 226 SHEET 8 B10 TYR A 257 THR A 265 1 O ILE A 259 N GLY A 250 SHEET 9 B10 GLN A 268 ILE A 274 -1 O ILE A 274 N ARG A 258 SHEET 10 B10 ARG A 280 LEU A 285 -1 O VAL A 283 N TYR A 271 SHEET 1 C 6 ASP A 328 ARG A 335 0 SHEET 2 C 6 GLY A 338 ASP A 345 -1 O VAL A 340 N PHE A 333 SHEET 3 C 6 LEU A 453 GLN A 457 1 O ILE A 454 N ARG A 341 SHEET 4 C 6 ILE A 369 PHE A 373 1 N VAL A 370 O LEU A 455 SHEET 5 C 6 ALA A 397 LEU A 401 1 O ILE A 399 N MSE A 371 SHEET 6 C 6 ILE A 432 VAL A 434 1 O VAL A 434 N MSE A 400 SHEET 1 D 5 LYS B 65 ILE B 68 0 SHEET 2 D 5 GLN B 44 ASP B 49 1 N GLY B 47 O TYR B 67 SHEET 3 D 5 GLN B 20 ILE B 24 1 N ILE B 21 O GLN B 44 SHEET 4 D 5 VAL B 80 VAL B 83 1 O VAL B 82 N HIS B 22 SHEET 5 D 5 VAL B 104 GLN B 106 1 O ILE B 105 N VAL B 81 SHEET 1 E10 ALA B 162 HIS B 163 0 SHEET 2 E10 THR B 148 VAL B 150 -1 N PHE B 149 O HIS B 163 SHEET 3 E10 TYR B 169 GLU B 173 1 O TYR B 169 N THR B 148 SHEET 4 E10 HIS B 119 ALA B 124 1 N ILE B 121 O LEU B 170 SHEET 5 E10 VAL B 188 VAL B 191 1 O VAL B 190 N ALA B 122 SHEET 6 E10 LEU B 225 CYS B 229 1 O VAL B 227 N SER B 189 SHEET 7 E10 GLN B 245 GLY B 250 1 O ILE B 247 N ALA B 226 SHEET 8 E10 TYR B 257 THR B 265 1 O ILE B 259 N GLY B 250 SHEET 9 E10 GLN B 268 ILE B 274 -1 O THR B 272 N GLU B 260 SHEET 10 E10 ARG B 280 LEU B 285 -1 O VAL B 283 N TYR B 271 SHEET 1 F 6 ASP B 328 ARG B 335 0 SHEET 2 F 6 GLY B 338 ASP B 345 -1 O VAL B 340 N PHE B 333 SHEET 3 F 6 LEU B 453 GLN B 457 1 O ILE B 454 N ARG B 341 SHEET 4 F 6 ILE B 369 PHE B 373 1 N VAL B 370 O LEU B 453 SHEET 5 F 6 ALA B 397 LEU B 401 1 O ILE B 399 N MSE B 371 SHEET 6 F 6 ILE B 432 VAL B 434 1 O VAL B 434 N MSE B 400 LINK C GLU A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N ARG A 16 1555 1555 1.33 LINK C GLY A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N SER A 32 1555 1555 1.33 LINK C GLN A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LEU A 111 1555 1555 1.33 LINK C ILE A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N ARG A 116 1555 1555 1.33 LINK C ALA A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ILE A 136 1555 1555 1.33 LINK C SER A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ILE A 139 1555 1555 1.34 LINK C PRO A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N VAL A 188 1555 1555 1.33 LINK C ASN A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N GLU A 195 1555 1555 1.33 LINK C HIS A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N ASP A 200 1555 1555 1.33 LINK C LYS A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N LYS A 210 1555 1555 1.33 LINK C VAL A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N CYS A 229 1555 1555 1.33 LINK C LEU A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N GLU A 237 1555 1555 1.33 LINK C VAL A 370 N MSE A 371 1555 1555 1.33 LINK C MSE A 371 N ILE A 372 1555 1555 1.33 LINK C ILE A 399 N MSE A 400 1555 1555 1.33 LINK C MSE A 400 N LEU A 401 1555 1555 1.33 LINK C GLU B 14 N MSE B 15 1555 1555 1.33 LINK C MSE B 15 N ARG B 16 1555 1555 1.33 LINK C GLY B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N SER B 32 1555 1555 1.33 LINK C GLN B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N LEU B 111 1555 1555 1.34 LINK C ILE B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N ARG B 116 1555 1555 1.33 LINK C ALA B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N ILE B 136 1555 1555 1.33 LINK C SER B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N ILE B 139 1555 1555 1.34 LINK C PRO B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N VAL B 188 1555 1555 1.33 LINK C ASN B 193 N MSE B 194 1555 1555 1.33 LINK C MSE B 194 N GLU B 195 1555 1555 1.33 LINK C HIS B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N ASP B 200 1555 1555 1.34 LINK C LYS B 208 N MSE B 209 1555 1555 1.33 LINK C MSE B 209 N LYS B 210 1555 1555 1.33 LINK C VAL B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N CYS B 229 1555 1555 1.33 LINK C LEU B 235 N MSE B 236 1555 1555 1.33 LINK C MSE B 236 N GLU B 237 1555 1555 1.33 LINK C VAL B 370 N MSE B 371 1555 1555 1.33 LINK C MSE B 371 N ILE B 372 1555 1555 1.33 LINK C ILE B 399 N MSE B 400 1555 1555 1.32 LINK C MSE B 400 N LEU B 401 1555 1555 1.33 LINK OG1 THR A 130 MN MN A 605 1555 1555 2.18 LINK OE2 GLU A 173 MN MN A 605 1555 1555 2.08 LINK NE2 HIS A 198 MN MN A 604 1555 1555 2.23 LINK O3G ANP A 603 MN MN A 604 1555 1555 2.05 LINK O1B ANP A 603 MN MN A 605 1555 1555 2.16 LINK O1G ANP A 603 MN MN A 605 1555 1555 2.12 LINK MN MN A 604 O HOH A 978 1555 1555 2.20 LINK MN MN A 604 O HOH A 979 1555 1555 2.06 LINK MN MN A 604 O HOH A 980 1555 1555 2.28 LINK MN MN A 604 O HOH A 981 1555 1555 2.16 LINK MN MN A 605 O HOH A 983 1555 1555 2.24 LINK MN MN A 605 O HOH A 984 1555 1555 2.10 LINK OG1 THR B 130 MN MN B1605 1555 1555 2.21 LINK OE2 GLU B 173 MN MN B1605 1555 1555 2.08 LINK NE2 HIS B 198 MN MN B1604 1555 1555 2.25 LINK O HOH B 972 MN MN B1604 1555 1555 2.21 LINK O HOH B 973 MN MN B1604 1555 1555 2.16 LINK O HOH B 974 MN MN B1604 1555 1555 2.20 LINK O HOH B 976 MN MN B1605 1555 1555 2.19 LINK O HOH B 977 MN MN B1605 1555 1555 2.11 LINK O18 UMA B1602 MN MN B1604 1555 1555 2.16 LINK O3G ANP B1603 MN MN B1604 1555 1555 2.06 LINK O1B ANP B1603 MN MN B1605 1555 1555 2.03 LINK O1G ANP B1603 MN MN B1605 1555 1555 2.10 SITE 1 AC1 6 HIS A 198 ANP A 603 HOH A 978 HOH A 979 SITE 2 AC1 6 HOH A 980 HOH A 981 SITE 1 AC2 5 THR A 130 GLU A 173 ANP A 603 HOH A 983 SITE 2 AC2 5 HOH A 984 SITE 1 AC3 6 HIS B 198 HOH B 972 HOH B 973 HOH B 974 SITE 2 AC3 6 UMA B1602 ANP B1603 SITE 1 AC4 5 THR B 130 GLU B 173 HOH B 976 HOH B 977 SITE 2 AC4 5 ANP B1603 SITE 1 AC5 37 GLY A 25 GLY A 27 GLY A 28 ALA A 29 SITE 2 AC5 37 GLY A 30 MSE A 31 ASP A 49 ILE A 50 SITE 3 AC5 37 HIS A 70 SER A 84 SER A 85 ALA A 86 SITE 4 AC5 37 ILE A 87 ARG A 107 ASP A 175 TYR A 346 SITE 5 AC5 37 HIS A 348 HIS A 376 ARG A 377 ARG A 380 SITE 6 AC5 37 HOH A 606 HOH A 635 HOH A 730 HOH A 763 SITE 7 AC5 37 HOH A 779 HOH A 887 HOH A 906 HOH A 984 SITE 8 AC5 37 HOH A1021 HOH A1048 HOH A1082 HOH A1095 SITE 9 AC5 37 HOH A1165 HOH A1319 HOH A1392 HOH A1415 SITE 10 AC5 37 HOH A1417 SITE 1 AC6 28 THR A 126 HIS A 127 GLY A 128 LYS A 129 SITE 2 AC6 28 THR A 130 THR A 131 GLU A 173 HIS A 291 SITE 3 AC6 28 ASN A 295 ARG A 326 ASP A 345 TYR A 346 SITE 4 AC6 28 GLY A 347 HIS A 348 GLU A 352 VAL A 355 SITE 5 AC6 28 THR A 356 MN A 604 MN A 605 HOH A 730 SITE 6 AC6 28 HOH A 978 HOH A 979 HOH A 980 HOH A 981 SITE 7 AC6 28 HOH A 982 HOH A 983 HOH A1001 HOH A1165 SITE 1 AC7 36 GLY B 25 GLY B 27 GLY B 28 ALA B 29 SITE 2 AC7 36 GLY B 30 MSE B 31 ASP B 49 ILE B 50 SITE 3 AC7 36 HIS B 70 SER B 84 SER B 85 ALA B 86 SITE 4 AC7 36 ILE B 87 ARG B 107 GLU B 173 ASP B 175 SITE 5 AC7 36 SER B 177 HIS B 198 TYR B 346 HIS B 348 SITE 6 AC7 36 HIS B 376 ARG B 377 ARG B 380 HOH B 612 SITE 7 AC7 36 HOH B 621 HOH B 667 HOH B 705 HOH B 850 SITE 8 AC7 36 HOH B 905 HOH B 938 HOH B 977 HOH B 985 SITE 9 AC7 36 HOH B1019 HOH B1080 ANP B1603 MN B1604 SITE 1 AC8 30 THR B 126 HIS B 127 GLY B 128 LYS B 129 SITE 2 AC8 30 THR B 130 THR B 131 GLU B 173 ASN B 193 SITE 3 AC8 30 HIS B 291 ASN B 295 ARG B 326 ASP B 345 SITE 4 AC8 30 TYR B 346 GLY B 347 HIS B 348 GLU B 352 SITE 5 AC8 30 VAL B 355 THR B 356 HOH B 850 HOH B 972 SITE 6 AC8 30 HOH B 973 HOH B 974 HOH B 975 HOH B 976 SITE 7 AC8 30 HOH B 977 HOH B 985 HOH B 993 UMA B1602 SITE 8 AC8 30 MN B1604 MN B1605 CRYST1 74.920 87.328 86.113 90.00 104.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013348 0.000000 0.003542 0.00000 SCALE2 0.000000 0.011451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012015 0.00000