HEADER OXIDOREDUCTASE 21-APR-03 1P45 TITLE TARGETING TUBERCULOSIS AND MALARIA THROUGH INHIBITION OF ENOYL TITLE 2 REDUCTASE: COMPOUND ACTIVITY AND STRUCTURAL DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NADH-DEPENDENT ENOYL-ACP REDUCTASE; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: INHA OR RV1484 OR MT1531 OR MTCY277.05; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHA, SHORT CHAIN DEHYDROGENASE REDUCTASE, TRICLOSAN, ROSSMANN FOLD, KEYWDS 2 ENOYL-ACP REDUCTASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.KUO,H.R.MORBIDONI,D.ALLAND,S.F.SNEDDON,B.B.GOURLIE,M.M.STAVESKI, AUTHOR 2 M.LEONARD,J.S.GREGORY,A.D.JANJIGIAN,C.YEE,J.M.MUSSER,B.N.KREISWIRTH, AUTHOR 3 H.IWAMOTO,R.PEROZZO,W.R.JACOBS JR.,J.C.SACCHETTINI,D.A.FIDOCK,TB AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 24-JUL-19 1P45 1 REMARK LINK REVDAT 4 13-JUL-11 1P45 1 VERSN REVDAT 3 24-FEB-09 1P45 1 VERSN REVDAT 2 01-FEB-05 1P45 1 AUTHOR KEYWDS REMARK REVDAT 1 16-SEP-03 1P45 0 JRNL AUTH M.R.KUO,H.R.MORBIDONI,D.ALLAND,S.F.SNEDDON,B.B.GOURLIE, JRNL AUTH 2 M.M.STAVESKI,M.LEONARD,J.S.GREGORY,A.D.JANJIGIAN,C.YEE, JRNL AUTH 3 J.M.MUSSER,B.KREISWIRTH,H.IWAMOTO,R.PEROZZO,W.R.JACOBS, JRNL AUTH 4 J.C.SACCHETTINI,D.A.FIDOCK JRNL TITL TARGETING TUBERCULOSIS AND MALARIA THROUGH INHIBITION OF JRNL TITL 2 ENOYL REDUCTASE: COMPOUND ACTIVITY AND STRUCTURAL DATA. JRNL REF J.BIOL.CHEM. V. 278 20851 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12606558 JRNL DOI 10.1074/JBC.M211968200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 26302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4130 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 5.74000 REMARK 3 B33 (A**2) : -5.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.400 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4213 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3878 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5738 ; 2.940 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8974 ; 1.341 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ;11.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4682 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 826 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1163 ; 0.265 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4703 ; 0.264 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2446 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 131 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2649 ; 1.080 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4217 ; 1.968 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 3.122 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1521 ; 4.978 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1P45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.41100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.87300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.87300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.41100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.41100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.06000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.87300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.06000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.41100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.87300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -245.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 52.06000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 THR B 2 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 118 O HOH B 523 2.10 REMARK 500 O GLY B 3 N ASP B 6 2.17 REMARK 500 ND2 ASN A 172 O HOH A 451 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 181 CD LYS A 181 CE 0.159 REMARK 500 GLN B 214 CB GLN B 214 CG 0.325 REMARK 500 GLN B 214 CG GLN B 214 CD 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 150 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 168 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 177 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 177 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 223 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU A 269 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 MET B 130 CG - SD - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 173 CG - CD - NE ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLN B 214 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B 225 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 248 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 250 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 172.70 -59.78 REMARK 500 ASP A 42 -10.54 -39.34 REMARK 500 PRO A 55 -80.27 -38.64 REMARK 500 LEU A 63 93.81 -174.72 REMARK 500 ALA A 84 141.83 -24.15 REMARK 500 PRO A 99 158.02 -48.41 REMARK 500 ASP A 150 103.38 -58.61 REMARK 500 ALA A 157 -63.54 84.84 REMARK 500 ASN A 159 -106.60 52.07 REMARK 500 GLU A 210 -43.24 -134.59 REMARK 500 ALA A 260 69.93 -102.39 REMARK 500 ASP A 261 29.13 -142.72 REMARK 500 LEU B 4 -30.90 -24.82 REMARK 500 LEU B 5 30.31 -97.45 REMARK 500 LYS B 8 140.61 -39.80 REMARK 500 ILE B 16 -16.33 -154.91 REMARK 500 SER B 20 135.51 -39.96 REMARK 500 GLU B 31 -27.84 -34.16 REMARK 500 ARG B 45 -86.62 -2.51 REMARK 500 PRO B 55 -112.35 -53.85 REMARK 500 ALA B 56 173.69 -37.70 REMARK 500 LEU B 74 -61.57 -29.70 REMARK 500 PHE B 97 146.58 -172.30 REMARK 500 GLN B 100 -33.82 -39.69 REMARK 500 ALA B 124 -85.87 -161.19 REMARK 500 ILE B 137 49.01 -107.16 REMARK 500 ALA B 157 -39.75 61.72 REMARK 500 ASN B 159 -120.38 29.97 REMARK 500 MET B 199 -52.94 -161.34 REMARK 500 ALA B 201 -88.81 -83.93 REMARK 500 ILE B 202 -54.09 21.32 REMARK 500 VAL B 203 -22.85 -143.54 REMARK 500 ALA B 206 11.23 43.18 REMARK 500 LEU B 207 82.42 -44.40 REMARK 500 GLU B 209 -37.69 63.42 REMARK 500 GLU B 210 -19.10 -44.33 REMARK 500 ALA B 213 -82.66 -26.35 REMARK 500 GLN B 214 19.96 -62.65 REMARK 500 ILE B 215 -51.00 -122.17 REMARK 500 ALA B 260 67.14 -101.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 3 LEU A 4 -135.65 REMARK 500 PHE A 41 ASP A 42 -130.24 REMARK 500 MET A 138 ASN A 139 -149.94 REMARK 500 THR B 2 GLY B 3 -142.74 REMARK 500 LEU B 44 ARG B 45 133.20 REMARK 500 SER B 123 ALA B 124 -148.23 REMARK 500 LEU B 197 ALA B 198 144.87 REMARK 500 SER B 200 ALA B 201 144.02 REMARK 500 VAL B 203 GLY B 204 48.69 REMARK 500 LEU B 207 GLY B 208 -149.87 REMARK 500 GLY B 208 GLU B 209 -143.31 REMARK 500 GLU B 209 GLU B 210 145.38 REMARK 500 LEU B 268 LEU B 269 140.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCL A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCL B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P44 RELATED DB: PDB REMARK 900 RELATED ID: RV1484 RELATED DB: TARGETDB DBREF 1P45 A 1 269 UNP P0A5Y6 INHA_MYCTU 1 269 DBREF 1P45 B 1 269 UNP P0A5Y6 INHA_MYCTU 1 269 SEQRES 1 A 269 MET THR GLY LEU LEU ASP GLY LYS ARG ILE LEU VAL SER SEQRES 2 A 269 GLY ILE ILE THR ASP SER SER ILE ALA PHE HIS ILE ALA SEQRES 3 A 269 ARG VAL ALA GLN GLU GLN GLY ALA GLN LEU VAL LEU THR SEQRES 4 A 269 GLY PHE ASP ARG LEU ARG LEU ILE GLN ARG ILE THR ASP SEQRES 5 A 269 ARG LEU PRO ALA LYS ALA PRO LEU LEU GLU LEU ASP VAL SEQRES 6 A 269 GLN ASN GLU GLU HIS LEU ALA SER LEU ALA GLY ARG VAL SEQRES 7 A 269 THR GLU ALA ILE GLY ALA GLY ASN LYS LEU ASP GLY VAL SEQRES 8 A 269 VAL HIS SER ILE GLY PHE MET PRO GLN THR GLY MET GLY SEQRES 9 A 269 ILE ASN PRO PHE PHE ASP ALA PRO TYR ALA ASP VAL SER SEQRES 10 A 269 LYS GLY ILE HIS ILE SER ALA TYR SER TYR ALA SER MET SEQRES 11 A 269 ALA LYS ALA LEU LEU PRO ILE MET ASN PRO GLY GLY SER SEQRES 12 A 269 ILE VAL GLY MET ASP PHE ASP PRO SER ARG ALA MET PRO SEQRES 13 A 269 ALA TYR ASN TRP MET THR VAL ALA LYS SER ALA LEU GLU SEQRES 14 A 269 SER VAL ASN ARG PHE VAL ALA ARG GLU ALA GLY LYS TYR SEQRES 15 A 269 GLY VAL ARG SER ASN LEU VAL ALA ALA GLY PRO ILE ARG SEQRES 16 A 269 THR LEU ALA MET SER ALA ILE VAL GLY GLY ALA LEU GLY SEQRES 17 A 269 GLU GLU ALA GLY ALA GLN ILE GLN LEU LEU GLU GLU GLY SEQRES 18 A 269 TRP ASP GLN ARG ALA PRO ILE GLY TRP ASN MET LYS ASP SEQRES 19 A 269 ALA THR PRO VAL ALA LYS THR VAL CYS ALA LEU LEU SER SEQRES 20 A 269 ASP TRP LEU PRO ALA THR THR GLY ASP ILE ILE TYR ALA SEQRES 21 A 269 ASP GLY GLY ALA HIS THR GLN LEU LEU SEQRES 1 B 269 MET THR GLY LEU LEU ASP GLY LYS ARG ILE LEU VAL SER SEQRES 2 B 269 GLY ILE ILE THR ASP SER SER ILE ALA PHE HIS ILE ALA SEQRES 3 B 269 ARG VAL ALA GLN GLU GLN GLY ALA GLN LEU VAL LEU THR SEQRES 4 B 269 GLY PHE ASP ARG LEU ARG LEU ILE GLN ARG ILE THR ASP SEQRES 5 B 269 ARG LEU PRO ALA LYS ALA PRO LEU LEU GLU LEU ASP VAL SEQRES 6 B 269 GLN ASN GLU GLU HIS LEU ALA SER LEU ALA GLY ARG VAL SEQRES 7 B 269 THR GLU ALA ILE GLY ALA GLY ASN LYS LEU ASP GLY VAL SEQRES 8 B 269 VAL HIS SER ILE GLY PHE MET PRO GLN THR GLY MET GLY SEQRES 9 B 269 ILE ASN PRO PHE PHE ASP ALA PRO TYR ALA ASP VAL SER SEQRES 10 B 269 LYS GLY ILE HIS ILE SER ALA TYR SER TYR ALA SER MET SEQRES 11 B 269 ALA LYS ALA LEU LEU PRO ILE MET ASN PRO GLY GLY SER SEQRES 12 B 269 ILE VAL GLY MET ASP PHE ASP PRO SER ARG ALA MET PRO SEQRES 13 B 269 ALA TYR ASN TRP MET THR VAL ALA LYS SER ALA LEU GLU SEQRES 14 B 269 SER VAL ASN ARG PHE VAL ALA ARG GLU ALA GLY LYS TYR SEQRES 15 B 269 GLY VAL ARG SER ASN LEU VAL ALA ALA GLY PRO ILE ARG SEQRES 16 B 269 THR LEU ALA MET SER ALA ILE VAL GLY GLY ALA LEU GLY SEQRES 17 B 269 GLU GLU ALA GLY ALA GLN ILE GLN LEU LEU GLU GLU GLY SEQRES 18 B 269 TRP ASP GLN ARG ALA PRO ILE GLY TRP ASN MET LYS ASP SEQRES 19 B 269 ALA THR PRO VAL ALA LYS THR VAL CYS ALA LEU LEU SER SEQRES 20 B 269 ASP TRP LEU PRO ALA THR THR GLY ASP ILE ILE TYR ALA SEQRES 21 B 269 ASP GLY GLY ALA HIS THR GLN LEU LEU HET NAD A 300 44 HET TCL A 400 17 HET TCL A 450 17 HET NAD B 350 44 HET TCL B 500 17 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM TCL TRICLOSAN FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 TCL 3(C12 H7 CL3 O2) FORMUL 8 HOH *45(H2 O) HELIX 1 1 SER A 20 GLN A 32 1 13 HELIX 2 2 ARG A 43 ARG A 53 1 11 HELIX 3 3 ASN A 67 GLY A 83 1 17 HELIX 4 4 PRO A 99 MET A 103 5 5 HELIX 5 5 PRO A 107 ALA A 111 5 5 HELIX 6 6 PRO A 112 ALA A 124 1 13 HELIX 7 7 ALA A 124 LEU A 135 1 12 HELIX 8 8 ASN A 159 GLY A 180 1 22 HELIX 9 9 THR A 196 GLY A 204 1 9 HELIX 10 10 GLU A 210 ALA A 226 1 17 HELIX 11 11 ALA A 235 SER A 247 1 13 HELIX 12 12 GLY A 263 GLN A 267 5 5 HELIX 13 13 SER B 20 GLN B 32 1 13 HELIX 14 14 ARG B 43 THR B 51 1 9 HELIX 15 15 ASN B 67 GLY B 83 1 17 HELIX 16 16 PRO B 99 MET B 103 5 5 HELIX 17 17 PRO B 107 ALA B 111 5 5 HELIX 18 18 PRO B 112 ALA B 124 1 13 HELIX 19 19 ALA B 124 LEU B 135 1 12 HELIX 20 20 TYR B 158 GLY B 180 1 23 HELIX 21 21 GLU B 209 ALA B 226 1 18 HELIX 22 22 ALA B 235 SER B 247 1 13 HELIX 23 23 GLY B 263 GLN B 267 5 5 SHEET 1 A 7 LEU A 60 GLU A 62 0 SHEET 2 A 7 ALA A 34 GLY A 40 1 N LEU A 38 O LEU A 61 SHEET 3 A 7 LYS A 8 VAL A 12 1 N LYS A 8 O GLN A 35 SHEET 4 A 7 LEU A 88 HIS A 93 1 O GLY A 90 N LEU A 11 SHEET 5 A 7 MET A 138 ASP A 148 1 O VAL A 145 N VAL A 91 SHEET 6 A 7 VAL A 184 ALA A 191 1 O ARG A 185 N ILE A 144 SHEET 7 A 7 ILE A 257 ALA A 260 1 O ILE A 258 N ALA A 190 SHEET 1 B 7 LEU B 60 GLU B 62 0 SHEET 2 B 7 GLN B 35 GLY B 40 1 N LEU B 38 O LEU B 61 SHEET 3 B 7 ARG B 9 VAL B 12 1 N VAL B 12 O VAL B 37 SHEET 4 B 7 LEU B 88 HIS B 93 1 O GLY B 90 N LEU B 11 SHEET 5 B 7 MET B 138 ASP B 148 1 O VAL B 145 N HIS B 93 SHEET 6 B 7 VAL B 184 ALA B 191 1 O VAL B 189 N ASP B 148 SHEET 7 B 7 ASP B 256 ALA B 260 1 O ASP B 256 N LEU B 188 LINK OG SER A 20 O2A NAD A 300 1555 1555 2.03 LINK O GLY B 14 O3B NAD B 350 1555 1555 1.89 CISPEP 1 GLY B 204 GLY B 205 0 -4.92 SITE 1 AC1 20 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC1 20 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC1 20 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC1 20 ILE A 122 MET A 147 ASP A 148 LYS A 165 SITE 5 AC1 20 PRO A 193 ILE A 194 THR A 196 TCL A 400 SITE 1 AC2 20 GLY B 14 ILE B 15 ILE B 16 SER B 20 SITE 2 AC2 20 ILE B 21 PHE B 41 LEU B 63 ASP B 64 SITE 3 AC2 20 VAL B 65 SER B 94 ILE B 95 GLY B 96 SITE 4 AC2 20 MET B 147 ASP B 148 LYS B 165 PRO B 193 SITE 5 AC2 20 ILE B 194 THR B 196 ALA B 198 TCL B 500 SITE 1 AC3 8 GLY A 96 MET A 98 MET A 103 PHE A 149 SITE 2 AC3 8 TYR A 158 MET A 199 NAD A 300 TCL A 450 SITE 1 AC4 8 GLN A 100 MET A 103 GLY A 104 TYR A 158 SITE 2 AC4 8 ILE A 202 ILE A 215 LEU A 218 TCL A 400 SITE 1 AC5 9 GLY B 96 MET B 98 MET B 103 PHE B 149 SITE 2 AC5 9 TYR B 158 MET B 161 ALA B 198 ILE B 202 SITE 3 AC5 9 NAD B 350 CRYST1 94.822 104.120 189.746 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005270 0.00000