HEADER TRANSFERASE 27-APR-03 1P5H TITLE CRYSTAL STRUCTURE OF FORMYL-COA TRANSFERASE (APOENZYME) FROM TITLE 2 OXALOBACTER FORMIGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMYL-COENZYME A TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORMYL-COA TRANSFERASE; COMPND 5 EC: 2.8.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OXALOBACTER FORMIGENES; SOURCE 3 ORGANISM_TAXID: 847; SOURCE 4 GENE: FRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9A KEYWDS COA-TRANSFERASE, OXALATE, OXALATE DEGRADATION, INTERTWINED, KNOTTED KEYWDS 2 FOLD, CAIB-BAIF FAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RICAGNO,S.JONSSON,N.RICHARDS,Y.LINDQVIST REVDAT 4 14-FEB-24 1P5H 1 REMARK REVDAT 3 13-JUL-11 1P5H 1 VERSN REVDAT 2 24-FEB-09 1P5H 1 VERSN REVDAT 1 29-JUL-03 1P5H 0 JRNL AUTH S.RICAGNO,S.JONSSON,N.RICHARDS,Y.LINDQVIST JRNL TITL FORMYL-COA TRANSFERASE ENCLOSES THE COA BINDING SITE AT THE JRNL TITL 2 INTERFACE OF AN INTERLOCKED DIMER JRNL REF EMBO J. V. 22 3210 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12839984 JRNL DOI 10.1093/EMBOJ/CDG333 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2870 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6767 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 6063 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9150 ; 1.297 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14170 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 850 ; 6.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 980 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7594 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1320 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1412 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7032 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3840 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 423 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.083 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4223 ; 0.719 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6772 ; 1.349 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2544 ; 1.822 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2378 ; 3.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 428 REMARK 3 ORIGIN FOR THE GROUP (A): -36.5120 21.9400 8.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0665 REMARK 3 T33: 0.0423 T12: 0.0424 REMARK 3 T13: 0.0222 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8176 L22: 0.4666 REMARK 3 L33: 0.6963 L12: -0.0260 REMARK 3 L13: -0.3103 L23: -0.1397 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0307 S13: -0.0370 REMARK 3 S21: 0.1225 S22: 0.0323 S23: 0.0826 REMARK 3 S31: -0.0389 S32: -0.1117 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 428 REMARK 3 ORIGIN FOR THE GROUP (A): -34.4100 17.6720 0.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0300 REMARK 3 T33: 0.0378 T12: 0.0283 REMARK 3 T13: 0.0128 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.5235 L22: 0.6932 REMARK 3 L33: 1.0154 L12: -0.1102 REMARK 3 L13: -0.0354 L23: 0.3338 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.0182 S13: -0.0020 REMARK 3 S21: -0.0014 S22: 0.0272 S23: 0.0942 REMARK 3 S31: -0.0549 S32: -0.1204 S33: -0.0365 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1P5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000019031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-01; 08-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : ID14-1; BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933; 0.9790 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE (220); DOUBLE REMARK 200 CRYSTAL FOCUSSING MONOCHROMATOR REMARK 200 OPTICS : NULL; PREMIRROR, DOUBLE CRYSTAL REMARK 200 FOCUSSING MONOCHROMATOR, BENT REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23600 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CLORIDE, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.74500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 75.72000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 75.72000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.74500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 75.72000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 75.72000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 237 O ASP B 239 2.06 REMARK 500 O HOH A 1000 O HOH A 1159 2.08 REMARK 500 O HOH B 1062 O HOH B 1350 2.12 REMARK 500 NE2 GLN B 392 O HOH B 1237 2.13 REMARK 500 OD1 ASN B 9 O HOH B 1099 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1329 O HOH B 1087 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 428 C VAL A 428 O -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 169 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 202 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 428 CA - C - O ANGL. DEV. = 31.5 DEGREES REMARK 500 ASP B 275 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 -121.81 83.58 REMARK 500 SER A 41 -60.66 -96.83 REMARK 500 PRO A 99 -75.73 -35.07 REMARK 500 ASP A 169 -73.98 -85.64 REMARK 500 LYS A 316 10.19 -152.73 REMARK 500 LYS A 333 -58.47 -29.55 REMARK 500 LEU A 414 134.27 -36.48 REMARK 500 LYS B 3 100.49 103.12 REMARK 500 VAL B 16 -120.80 73.27 REMARK 500 SER B 41 -63.83 -98.58 REMARK 500 ASN B 96 44.57 -143.78 REMARK 500 GLU B 140 -73.27 -15.24 REMARK 500 ASP B 169 -75.54 -95.57 REMARK 500 ASN B 233 70.91 23.81 REMARK 500 ASP B 237 -89.82 -69.19 REMARK 500 ARG B 238 -43.27 -142.37 REMARK 500 ASN B 247 -2.89 72.30 REMARK 500 ASP B 304 111.72 -165.53 REMARK 500 LYS B 316 35.06 -148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P5R RELATED DB: PDB DBREF 1P5H A 1 428 UNP O06644 FCTA_OXAFO 0 427 DBREF 1P5H B 1 428 UNP O06644 FCTA_OXAFO 0 427 SEQRES 1 A 428 MET THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE SEQRES 2 A 428 THR HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET SEQRES 3 A 428 GLY PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG SEQRES 4 A 428 GLY SER GLY ASP MET THR ARG GLY TRP LEU GLN ASP LYS SEQRES 5 A 428 PRO ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS SEQRES 6 A 428 ASN LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU SEQRES 7 A 428 GLY LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP SEQRES 8 A 428 VAL MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG SEQRES 9 A 428 MET GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO SEQRES 10 A 428 ARG VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY SEQRES 11 A 428 HIS ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA SEQRES 12 A 428 GLN CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP SEQRES 13 A 428 ASP GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY ASP SEQRES 14 A 428 SER ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA SEQRES 15 A 428 ALA LEU GLU MET ARG HIS LYS THR GLY ARG GLY GLN LYS SEQRES 16 A 428 VAL ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL SEQRES 17 A 428 ARG ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR SEQRES 18 A 428 GLY ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE SEQRES 19 A 428 ALA PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN SEQRES 20 A 428 ILE THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY SEQRES 21 A 428 GLY GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU SEQRES 22 A 428 THR ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA SEQRES 23 A 428 ASN MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO SEQRES 24 A 428 GLU TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY SEQRES 25 A 428 ARG VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU SEQRES 26 A 428 THR LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU SEQRES 27 A 428 TRP ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SEQRES 28 A 428 SER MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS SEQRES 29 A 428 VAL GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY SEQRES 30 A 428 ASN HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY SEQRES 31 A 428 PHE GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU SEQRES 32 A 428 HIS THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP SEQRES 33 A 428 ALA LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL SEQRES 1 B 428 MET THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE SEQRES 2 B 428 THR HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET SEQRES 3 B 428 GLY PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG SEQRES 4 B 428 GLY SER GLY ASP MET THR ARG GLY TRP LEU GLN ASP LYS SEQRES 5 B 428 PRO ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS SEQRES 6 B 428 ASN LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU SEQRES 7 B 428 GLY LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP SEQRES 8 B 428 VAL MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG SEQRES 9 B 428 MET GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO SEQRES 10 B 428 ARG VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY SEQRES 11 B 428 HIS ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA SEQRES 12 B 428 GLN CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP SEQRES 13 B 428 ASP GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY ASP SEQRES 14 B 428 SER ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA SEQRES 15 B 428 ALA LEU GLU MET ARG HIS LYS THR GLY ARG GLY GLN LYS SEQRES 16 B 428 VAL ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL SEQRES 17 B 428 ARG ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR SEQRES 18 B 428 GLY ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE SEQRES 19 B 428 ALA PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN SEQRES 20 B 428 ILE THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY SEQRES 21 B 428 GLY GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU SEQRES 22 B 428 THR ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA SEQRES 23 B 428 ASN MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO SEQRES 24 B 428 GLU TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY SEQRES 25 B 428 ARG VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU SEQRES 26 B 428 THR LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU SEQRES 27 B 428 TRP ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SEQRES 28 B 428 SER MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS SEQRES 29 B 428 VAL GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY SEQRES 30 B 428 ASN HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY SEQRES 31 B 428 PHE GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU SEQRES 32 B 428 HIS THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP SEQRES 33 B 428 ALA LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL FORMUL 3 HOH *530(H2 O) HELIX 1 1 GLN A 17 LEU A 29 1 13 HELIX 2 2 ASP A 43 TRP A 48 5 6 HELIX 3 3 SER A 57 MET A 62 1 6 HELIX 4 4 THR A 76 ALA A 90 1 15 HELIX 5 5 GLY A 100 MET A 105 1 6 HELIX 6 6 THR A 108 ASN A 116 1 9 HELIX 7 7 TYR A 139 GLY A 147 1 9 HELIX 8 8 ALA A 149 THR A 153 5 5 HELIX 9 9 GLY A 168 GLY A 191 1 24 HELIX 10 10 MET A 200 VAL A 208 1 9 HELIX 11 11 VAL A 208 GLY A 222 1 15 HELIX 12 12 TYR A 227 GLN A 231 5 5 HELIX 13 13 ALA A 285 ASN A 287 5 3 HELIX 14 14 MET A 288 ILE A 296 1 9 HELIX 15 15 LYS A 298 LYS A 302 5 5 HELIX 16 16 THR A 309 VAL A 314 1 6 HELIX 17 17 LYS A 316 LYS A 327 1 12 HELIX 18 18 ASP A 332 GLN A 342 1 11 HELIX 19 19 SER A 352 ASP A 359 1 8 HELIX 20 20 ASP A 359 VAL A 365 1 7 HELIX 21 21 HIS A 404 GLY A 413 1 10 HELIX 22 22 ASP A 415 LYS A 425 1 11 HELIX 23 23 GLN B 17 LEU B 29 1 13 HELIX 24 24 SER B 57 MET B 62 1 6 HELIX 25 25 THR B 76 ALA B 90 1 15 HELIX 26 26 GLY B 100 MET B 105 1 6 HELIX 27 27 THR B 108 ASN B 116 1 9 HELIX 28 28 TYR B 139 GLY B 147 1 9 HELIX 29 29 ASP B 169 GLY B 191 1 23 HELIX 30 30 MET B 200 VAL B 208 1 9 HELIX 31 31 VAL B 208 GLY B 222 1 15 HELIX 32 32 TYR B 227 GLN B 231 5 5 HELIX 33 33 ALA B 285 ASN B 287 5 3 HELIX 34 34 MET B 288 ILE B 296 1 9 HELIX 35 35 LYS B 298 LYS B 302 5 5 HELIX 36 36 THR B 309 VAL B 314 1 6 HELIX 37 37 LYS B 316 LYS B 327 1 12 HELIX 38 38 ASP B 332 GLN B 342 1 11 HELIX 39 39 SER B 352 HIS B 358 1 7 HELIX 40 40 ASP B 359 VAL B 365 1 7 HELIX 41 41 HIS B 404 GLY B 413 1 10 HELIX 42 42 ASP B 415 LYS B 425 1 11 SHEET 1 A 7 ARG A 68 GLU A 71 0 SHEET 2 A 7 ASN A 32 GLU A 37 1 N LYS A 35 O ARG A 68 SHEET 3 A 7 ASN A 9 ASP A 12 1 N VAL A 10 O ASN A 32 SHEET 4 A 7 VAL A 92 GLU A 95 1 O VAL A 92 N LEU A 11 SHEET 5 A 7 ILE A 120 LYS A 125 1 O ALA A 122 N MET A 93 SHEET 6 A 7 LYS A 195 ALA A 199 1 O VAL A 196 N LEU A 121 SHEET 7 A 7 PHE B 386 PHE B 388 -1 O LYS B 387 N ALA A 197 SHEET 1 B 3 GLY A 264 LYS A 268 0 SHEET 2 B 3 TYR A 279 THR A 283 -1 O VAL A 280 N LEU A 267 SHEET 3 B 3 CYS A 347 PRO A 349 -1 O GLY A 348 N TYR A 281 SHEET 1 C 2 VAL A 368 VAL A 371 0 SHEET 2 C 2 HIS A 379 VAL A 382 -1 O THR A 381 N VAL A 369 SHEET 1 D 7 PHE A 386 PHE A 388 0 SHEET 2 D 7 LYS B 195 ALA B 199 -1 O ALA B 197 N LYS A 387 SHEET 3 D 7 ILE B 120 LYS B 125 1 N LEU B 121 O VAL B 196 SHEET 4 D 7 VAL B 92 GLU B 95 1 N MET B 93 O ILE B 120 SHEET 5 D 7 ASN B 9 ASP B 12 1 N LEU B 11 O VAL B 92 SHEET 6 D 7 ASN B 32 GLU B 37 1 O ILE B 34 N VAL B 10 SHEET 7 D 7 ARG B 68 GLU B 71 1 O ARG B 68 N LYS B 35 SHEET 1 E 3 GLY B 264 LYS B 268 0 SHEET 2 E 3 TYR B 279 THR B 283 -1 O VAL B 280 N LEU B 267 SHEET 3 E 3 CYS B 347 PRO B 349 -1 O GLY B 348 N TYR B 281 SHEET 1 F 2 VAL B 368 VAL B 371 0 SHEET 2 F 2 HIS B 379 VAL B 382 -1 O HIS B 379 N VAL B 371 CRYST1 151.440 151.440 99.490 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010051 0.00000