data_1P5O # _entry.id 1P5O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P5O pdb_00001p5o 10.2210/pdb1p5o/pdb RCSB RCSB019038 ? ? WWPDB D_1000019038 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P5O _pdbx_database_status.recvd_initial_deposition_date 2003-04-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lukavsky, P.J.' 1 'Kim, I.' 2 'Otto, G.A.' 3 'Puglisi, J.D.' 4 # _citation.id primary _citation.title 'Structure of HCV IRES domain II determined by NMR.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 1033 _citation.page_last 1038 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14578934 _citation.pdbx_database_id_DOI 10.1038/nsb1004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lukavsky, P.J.' 1 ? primary 'Kim, I.' 2 ? primary 'Otto, G.A.' 3 ? primary 'Puglisi, J.D.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 77-MER _entity.formula_weight 24776.691 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'HCV IRES domain II (residues 45-117)' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC _entity_poly.pdbx_seq_one_letter_code_can GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 G n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 A n 1 12 A n 1 13 C n 1 14 U n 1 15 A n 1 16 C n 1 17 U n 1 18 G n 1 19 U n 1 20 C n 1 21 U n 1 22 U n 1 23 C n 1 24 A n 1 25 C n 1 26 G n 1 27 C n 1 28 A n 1 29 G n 1 30 A n 1 31 A n 1 32 A n 1 33 G n 1 34 C n 1 35 G n 1 36 U n 1 37 C n 1 38 U n 1 39 A n 1 40 G n 1 41 C n 1 42 C n 1 43 A n 1 44 U n 1 45 G n 1 46 G n 1 47 C n 1 48 G n 1 49 U n 1 50 U n 1 51 A n 1 52 G n 1 53 U n 1 54 A n 1 55 U n 1 56 G n 1 57 A n 1 58 G n 1 59 U n 1 60 G n 1 61 U n 1 62 C n 1 63 G n 1 64 U n 1 65 G n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 C n 1 71 U n 1 72 C n 1 73 C n 1 74 A n 1 75 G n 1 76 C n 1 77 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized by in vitro transcription from linearized plasmid DNA using T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1P5O _struct_ref.pdbx_db_accession 1P5O _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1P5O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1P5O _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 77 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 77 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 2 '2D S-NOESY' 2 2 3 '2D NOESY' 3 2 3 DQF-COSY 4 2 3 '2D HP-COSY' 5 4 3 3D_13C-separated_NOESY 6 4 3 '3D HCP' 7 4 3 '3D HMQC TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K 2 298 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K 3 303 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '96% D2O, 4% H2O' 2 ;0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '100% D2O' 3 ;0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '96% D2O, 4% H2O' 4 ;0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 800 # _pdbx_nmr_refine.entry_id 1P5O _pdbx_nmr_refine.method 'see reference above' _pdbx_nmr_refine.details 'see reference above' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1P5O _pdbx_nmr_details.text ;The structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings ; # _pdbx_nmr_ensemble.entry_id 1P5O _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'lowest restraint violation and total energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1P5O _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1C processing Varian 1 Sparky 3 'data analysis' 'Goddard, T.D. & Kneller D.G.' 2 X-PLOR 3.1 refinement 'Brunger, A.T.' 3 CNS 1.1 refinement 'Brunger, A.T. et al' 4 PALES 1 refinement 'Zweckstetter, M. & Bax, A.' 5 # _exptl.entry_id 1P5O _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1P5O _struct.title 'Solution Structure of HCV IRES Domain II' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P5O _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, tRNA, LOOP E MOTIF, HAIRPIN LOOP, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 1 A C 77 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A G 75 N1 ? ? A G 2 A G 75 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 76 N3 ? ? A G 2 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 76 O2 ? ? A G 2 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 76 N4 ? ? A G 2 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 75 N1 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 75 O6 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 75 N2 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 74 N1 ? ? A U 4 A A 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 74 N6 ? ? A U 4 A A 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 5 A C 72 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 71 N3 ? ? A A 8 A U 71 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 9 A C 69 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 9 A C 70 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 17 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 17 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 19 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 19 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A U 19 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 19 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 21 N3 ? ? ? 1_555 A C 62 N3 ? ? A U 21 A C 62 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog38 hydrog ? ? A U 21 O4 ? ? ? 1_555 A C 62 N4 ? ? A U 21 A C 62 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog39 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 24 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 24 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 26 N7 ? ? ? 1_555 A A 57 N6 ? ? A G 26 A A 57 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 28 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 28 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 54 N7 ? ? A G 29 A A 54 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 29 A A 54 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A G 29 N2 ? ? ? 1_555 A U 55 O4 ? ? A G 29 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog56 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 53 O2 ? ? A A 30 A U 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? A A 30 N7 ? ? ? 1_555 A U 53 N3 ? ? A A 30 A U 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? A A 31 N6 ? ? ? 1_555 A A 51 N7 ? ? A A 31 A A 51 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog59 hydrog ? ? A A 31 N7 ? ? ? 1_555 A A 51 N6 ? ? A A 31 A A 51 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog60 hydrog ? ? A G 33 N1 ? ? ? 1_555 A U 49 O2 ? ? A G 33 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A G 33 O6 ? ? ? 1_555 A U 49 N3 ? ? A G 33 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 36 O2 ? ? ? 1_555 A G 46 N1 ? ? A U 36 A G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 39 N3 ? ? ? 1_555 A A 43 N6 ? ? A A 39 A A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog73 hydrog ? ? A G 52 N2 ? ? ? 1_555 A U 53 O4 ? ? A G 52 A U 53 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1P5O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1P5O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 G 2 2 2 G GUA A . n A 1 3 C 3 3 3 C CYT A . n A 1 4 U 4 4 4 U URI A . n A 1 5 G 5 5 5 G GUA A . n A 1 6 U 6 6 6 U URI A . n A 1 7 G 7 7 7 G GUA A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 G 9 9 9 G GUA A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 A 11 11 11 A ADE A . n A 1 12 A 12 12 12 A ADE A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 U 14 14 14 U URI A . n A 1 15 A 15 15 15 A ADE A . n A 1 16 C 16 16 16 C CYT A . n A 1 17 U 17 17 17 U URI A . n A 1 18 G 18 18 18 G GUA A . n A 1 19 U 19 19 19 U URI A . n A 1 20 C 20 20 20 C CYT A . n A 1 21 U 21 21 21 U URI A . n A 1 22 U 22 22 22 U URI A . n A 1 23 C 23 23 23 C CYT A . n A 1 24 A 24 24 24 A ADE A . n A 1 25 C 25 25 25 C CYT A . n A 1 26 G 26 26 26 G GUA A . n A 1 27 C 27 27 27 C CYT A . n A 1 28 A 28 28 28 A ADE A . n A 1 29 G 29 29 29 G GUA A . n A 1 30 A 30 30 30 A ADE A . n A 1 31 A 31 31 31 A ADE A . n A 1 32 A 32 32 32 A ADE A . n A 1 33 G 33 33 33 G GUA A . n A 1 34 C 34 34 34 C CYT A . n A 1 35 G 35 35 35 G GUA A . n A 1 36 U 36 36 36 U URI A . n A 1 37 C 37 37 37 C CYT A . n A 1 38 U 38 38 38 U URI A . n A 1 39 A 39 39 39 A ADE A . n A 1 40 G 40 40 40 G GUA A . n A 1 41 C 41 41 41 C CYT A . n A 1 42 C 42 42 42 C CYT A . n A 1 43 A 43 43 43 A ADE A . n A 1 44 U 44 44 44 U URI A . n A 1 45 G 45 45 45 G GUA A . n A 1 46 G 46 46 46 G GUA A . n A 1 47 C 47 47 47 C CYT A . n A 1 48 G 48 48 48 G GUA A . n A 1 49 U 49 49 49 U URI A . n A 1 50 U 50 50 50 U URI A . n A 1 51 A 51 51 51 A ADE A . n A 1 52 G 52 52 52 G GUA A . n A 1 53 U 53 53 53 U URI A . n A 1 54 A 54 54 54 A ADE A . n A 1 55 U 55 55 55 U URI A . n A 1 56 G 56 56 56 G GUA A . n A 1 57 A 57 57 57 A ADE A . n A 1 58 G 58 58 58 G GUA A . n A 1 59 U 59 59 59 U URI A . n A 1 60 G 60 60 60 G GUA A . n A 1 61 U 61 61 61 U URI A . n A 1 62 C 62 62 62 C CYT A . n A 1 63 G 63 63 63 G GUA A . n A 1 64 U 64 64 64 U URI A . n A 1 65 G 65 65 65 G GUA A . n A 1 66 C 66 66 66 C CYT A . n A 1 67 A 67 67 67 A ADE A . n A 1 68 G 68 68 68 G GUA A . n A 1 69 C 69 69 69 C CYT A . n A 1 70 C 70 70 70 C CYT A . n A 1 71 U 71 71 71 U URI A . n A 1 72 C 72 72 72 C CYT A . n A 1 73 C 73 73 73 C CYT A . n A 1 74 A 74 74 74 A ADE A . n A 1 75 G 75 75 75 G GUA A . n A 1 76 C 76 76 76 C CYT A . n A 1 77 C 77 77 77 C CYT A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-04 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 "O2'" A A 39 ? ? H61 A A 43 ? ? 1.58 2 3 O6 A G 29 ? ? "HO2'" A G 52 ? ? 1.58 3 4 O6 A G 29 ? ? "HO2'" A G 52 ? ? 1.50 4 6 O6 A G 29 ? ? "HO2'" A G 52 ? ? 1.57 5 7 H61 A A 32 ? ? "O2'" A U 50 ? ? 1.60 6 8 O6 A G 29 ? ? "HO2'" A G 52 ? ? 1.46 7 8 O6 A G 18 ? ? H41 A C 66 ? ? 1.59 8 10 "O2'" A A 39 ? ? H61 A A 43 ? ? 1.59 9 11 H61 A A 28 ? ? O4 A U 55 ? ? 1.51 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 2 _pdbx_validate_planes.auth_comp_id C _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 76 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.059 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P5O 'double helix' 1P5O 'a-form double helix' 1P5O 'hairpin loop' 1P5O 'bulge loop' 1P5O 'mismatched base pair' 1P5O 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 77 1_555 0.287 -0.167 -0.065 37.750 -49.321 -5.915 1 A_G1:C77_A A 1 ? A 77 ? ? ? 1 A G 2 1_555 A C 76 1_555 0.597 -0.157 0.691 14.192 -28.496 -13.190 2 A_G2:C76_A A 2 ? A 76 ? 19 1 1 A C 3 1_555 A G 75 1_555 -0.605 -0.153 0.676 10.777 -24.492 -0.714 3 A_C3:G75_A A 3 ? A 75 ? 19 1 1 A U 4 1_555 A A 74 1_555 -0.647 -0.060 0.399 21.002 -19.806 -3.318 4 A_U4:A74_A A 4 ? A 74 ? 20 1 1 A G 5 1_555 A C 73 1_555 0.453 -0.240 0.714 -1.969 -22.296 -0.909 5 A_G5:C73_A A 5 ? A 73 ? 19 1 1 A G 7 1_555 A C 72 1_555 0.550 -0.084 0.385 -6.945 -26.203 1.399 6 A_G7:C72_A A 7 ? A 72 ? 19 1 1 A A 8 1_555 A U 71 1_555 -0.485 -0.208 1.047 -3.011 -25.743 15.469 7 A_A8:U71_A A 8 ? A 71 ? ? 1 1 A G 9 1_555 A C 70 1_555 0.823 -0.036 0.549 -11.469 -32.916 6.844 8 A_G9:C70_A A 9 ? A 70 ? ? 1 1 A G 10 1_555 A C 69 1_555 0.509 -0.214 0.883 11.191 -8.360 -8.464 9 A_G10:C69_A A 10 ? A 69 ? 19 1 1 A C 16 1_555 A G 68 1_555 -0.399 0.017 0.168 10.768 -31.070 7.648 10 A_C16:G68_A A 16 ? A 68 ? 19 1 1 A U 17 1_555 A A 67 1_555 0.414 -0.218 0.627 10.354 -24.568 9.023 11 A_U17:A67_A A 17 ? A 67 ? 20 1 1 A G 18 1_555 A C 66 1_555 0.308 -0.181 -0.017 3.030 -27.521 -5.779 12 A_G18:C66_A A 18 ? A 66 ? 19 1 1 A U 19 1_555 A G 65 1_555 2.160 -0.516 -0.030 -5.956 -15.813 -12.433 13 A_U19:G65_A A 19 ? A 65 ? 28 ? 1 A C 20 1_555 A G 63 1_555 -0.171 -0.246 -0.378 -6.053 -16.924 5.770 14 A_C20:G63_A A 20 ? A 63 ? 19 1 1 A U 21 1_555 A C 62 1_555 -0.720 -1.613 0.377 15.335 -15.699 19.808 15 A_U21:C62_A A 21 ? A 62 ? 18 1 1 A C 23 1_555 A G 60 1_555 -0.429 -0.502 -1.125 0.111 -21.759 9.262 16 A_C23:G60_A A 23 ? A 60 ? 19 1 1 A A 24 1_555 A U 59 1_555 -0.430 -0.350 -0.421 -6.557 -11.161 1.574 17 A_A24:U59_A A 24 ? A 59 ? 20 1 1 A C 25 1_555 A G 58 1_555 -0.307 -0.121 -0.342 15.028 -12.435 -1.463 18 A_C25:G58_A A 25 ? A 58 ? 19 1 1 A G 26 1_555 A A 57 1_555 1.038 -5.516 0.350 25.173 0.678 60.971 19 A_G26:A57_A A 26 ? A 57 ? ? ? 1 A C 27 1_555 A G 56 1_555 -0.243 -0.254 -0.479 -3.555 -15.708 0.046 20 A_C27:G56_A A 27 ? A 56 ? 19 1 1 A A 28 1_555 A U 55 1_555 0.150 -0.121 -1.605 -38.591 5.863 -10.970 21 A_A28:U55_A A 28 ? A 55 ? 20 1 1 A G 29 1_555 A A 54 1_555 6.524 -3.301 -0.927 2.182 6.289 -9.278 22 A_G29:A54_A A 29 ? A 54 ? 11 9 1 A A 30 1_555 A U 53 1_555 -3.946 -1.384 -1.065 -0.789 -15.655 -108.942 23 A_A30:U53_A A 30 ? A 53 ? 24 4 1 A A 31 1_555 A A 51 1_555 -5.742 4.547 -0.629 -31.405 -16.420 -178.955 24 A_A31:A51_A A 31 ? A 51 ? 2 8 1 A G 33 1_555 A U 49 1_555 -2.437 -0.409 -0.002 6.537 -30.013 6.891 25 A_G33:U49_A A 33 ? A 49 ? 28 ? 1 A C 34 1_555 A G 48 1_555 -0.251 -0.142 -0.769 8.877 -15.995 4.299 26 A_C34:G48_A A 34 ? A 48 ? 19 1 1 A G 35 1_555 A C 47 1_555 0.161 -0.623 -2.010 -19.445 -11.155 8.040 27 A_G35:C47_A A 35 ? A 47 ? 19 1 1 A U 36 1_555 A G 46 1_555 1.145 0.082 -1.374 2.808 6.407 7.656 28 A_U36:G46_A A 36 ? A 46 ? ? 1 1 A C 37 1_555 A G 45 1_555 -0.391 -0.101 0.093 -0.132 -4.452 -1.972 29 A_C37:G45_A A 37 ? A 45 ? 19 1 1 A A 39 1_555 A A 43 1_555 4.857 -4.511 -1.893 2.296 64.486 -20.301 30 A_A39:A43_A A 39 ? A 43 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 77 1_555 A G 2 1_555 A C 76 1_555 -0.175 -0.534 3.975 -4.964 16.594 37.116 -2.944 -0.401 3.438 24.502 7.329 40.830 1 AA_G1G2:C76C77_AA A 1 ? A 77 ? A 2 ? A 76 ? 1 A G 2 1_555 A C 76 1_555 A C 3 1_555 A G 75 1_555 1.576 -1.252 3.002 4.143 -8.182 35.821 -0.886 -1.936 3.354 -13.041 -6.603 36.939 2 AA_G2C3:G75C76_AA A 2 ? A 76 ? A 3 ? A 75 ? 1 A C 3 1_555 A G 75 1_555 A U 4 1_555 A A 74 1_555 0.132 -1.176 3.087 0.080 -8.868 30.255 -0.520 -0.228 3.292 -16.548 -0.150 31.499 3 AA_C3U4:A74G75_AA A 3 ? A 75 ? A 4 ? A 74 ? 1 A U 4 1_555 A A 74 1_555 A G 5 1_555 A C 73 1_555 0.124 -1.712 3.612 -2.701 3.600 34.622 -3.441 -0.647 3.403 6.017 4.515 34.904 4 AA_U4G5:C73A74_AA A 4 ? A 74 ? A 5 ? A 73 ? 1 A G 5 1_555 A C 73 1_555 A G 7 1_555 A C 72 1_555 -0.721 -1.014 3.125 2.822 3.405 37.337 -1.988 1.462 2.964 5.295 -4.389 37.588 5 AA_G5G7:C72C73_AA A 5 ? A 73 ? A 7 ? A 72 ? 1 A G 7 1_555 A C 72 1_555 A A 8 1_555 A U 71 1_555 0.324 -0.899 2.614 -3.492 3.778 36.709 -1.810 -0.876 2.472 5.963 5.512 37.056 6 AA_G7A8:U71C72_AA A 7 ? A 72 ? A 8 ? A 71 ? 1 A A 8 1_555 A U 71 1_555 A G 9 1_555 A C 70 1_555 -0.633 -0.764 3.214 3.354 8.817 40.247 -1.986 1.241 2.931 12.605 -4.795 41.293 7 AA_A8G9:C70U71_AA A 8 ? A 71 ? A 9 ? A 70 ? 1 A G 9 1_555 A C 70 1_555 A G 10 1_555 A C 69 1_555 -0.397 -0.784 2.450 -4.078 -1.705 31.004 -1.207 0.148 2.519 -3.169 7.580 31.309 8 AA_G9G10:C69C70_AA A 9 ? A 70 ? A 10 ? A 69 ? 1 A C 16 1_555 A G 68 1_555 A U 17 1_555 A A 67 1_555 -0.007 -0.657 3.174 -4.833 15.067 35.554 -2.710 -0.542 2.671 23.304 7.476 38.811 9 AA_C16U17:A67G68_AA A 16 ? A 68 ? A 17 ? A 67 ? 1 A U 17 1_555 A A 67 1_555 A G 18 1_555 A C 66 1_555 -0.784 -0.838 3.116 4.821 14.304 34.697 -2.945 1.768 2.467 22.703 -7.652 37.745 10 AA_U17G18:C66A67_AA A 17 ? A 67 ? A 18 ? A 66 ? 1 A G 18 1_555 A C 66 1_555 A U 19 1_555 A G 65 1_555 0.608 -0.935 3.240 2.400 -3.191 49.330 -0.880 -0.548 3.315 -3.816 -2.870 49.481 11 AA_G18U19:G65C66_AA A 18 ? A 66 ? A 19 ? A 65 ? 1 A U 19 1_555 A G 65 1_555 A C 20 1_555 A G 63 1_555 0.238 -1.487 3.015 4.508 8.778 19.020 -6.981 0.889 2.128 24.541 -12.602 21.407 12 AA_U19C20:G63G65_AA A 19 ? A 65 ? A 20 ? A 63 ? 1 A C 20 1_555 A G 63 1_555 A U 21 1_555 A C 62 1_555 0.913 0.852 2.713 -9.302 15.121 26.899 -0.786 -3.079 2.414 28.858 17.751 32.139 13 AA_C20U21:C62G63_AA A 20 ? A 63 ? A 21 ? A 62 ? 1 A U 21 1_555 A C 62 1_555 A C 23 1_555 A G 60 1_555 -1.285 -1.846 6.483 8.103 19.432 76.638 -2.468 1.434 5.821 15.398 -6.421 79.047 14 AA_U21C23:G60C62_AA A 21 ? A 62 ? A 23 ? A 60 ? 1 A C 23 1_555 A G 60 1_555 A A 24 1_555 A U 59 1_555 -0.266 0.400 3.611 -6.174 21.905 26.224 -3.280 -0.666 3.051 40.020 11.280 34.591 15 AA_C23A24:U59G60_AA A 23 ? A 60 ? A 24 ? A 59 ? 1 A A 24 1_555 A U 59 1_555 A C 25 1_555 A G 58 1_555 0.593 -1.088 2.660 -0.530 -1.917 36.699 -1.511 -1.000 2.703 -3.041 0.841 36.751 16 AA_A24C25:G58U59_AA A 24 ? A 59 ? A 25 ? A 58 ? 1 A C 25 1_555 A G 58 1_555 A G 26 1_555 A A 57 1_555 2.328 -3.929 -0.058 -164.941 -1.606 147.192 -1.966 -1.111 -0.697 -0.806 82.773 175.761 17 AA_C25G26:A57G58_AA A 25 ? A 58 ? A 26 ? A 57 ? 1 A G 26 1_555 A A 57 1_555 A C 27 1_555 A G 56 1_555 -0.631 -3.924 -3.802 147.276 -92.783 93.061 -2.547 -0.610 -1.690 -46.825 -74.326 175.919 18 AA_G26C27:G56A57_AA A 26 ? A 57 ? A 27 ? A 56 ? 1 A C 27 1_555 A G 56 1_555 A A 28 1_555 A U 55 1_555 -0.141 -2.021 5.341 4.423 3.298 26.033 -5.770 2.156 4.959 7.219 -9.682 26.601 19 AA_C27A28:U55G56_AA A 27 ? A 56 ? A 28 ? A 55 ? 1 A A 28 1_555 A U 55 1_555 A G 29 1_555 A A 54 1_555 -0.373 0.109 2.319 -4.393 -7.547 64.848 0.322 0.216 2.314 -7.005 4.077 65.370 20 AA_A28G29:A54U55_AA A 28 ? A 55 ? A 29 ? A 54 ? 1 A G 29 1_555 A A 54 1_555 A A 30 1_555 A U 53 1_555 -4.546 -1.376 3.386 1.523 14.238 -4.018 -12.393 -15.673 2.699 -73.984 7.914 -14.869 21 AA_G29A30:U53A54_AA A 29 ? A 54 ? A 30 ? A 53 ? 1 A A 30 1_555 A U 53 1_555 A A 31 1_555 A A 51 1_555 1.406 -0.789 2.886 -1.477 -3.552 84.405 -0.514 -1.076 2.891 -2.643 1.099 84.477 22 AA_A30A31:A51U53_AA A 30 ? A 53 ? A 31 ? A 51 ? 1 A A 31 1_555 A A 51 1_555 A G 33 1_555 A U 49 1_555 -0.276 1.054 6.729 -11.720 11.148 -6.657 -16.270 -14.365 1.715 -46.713 -49.107 -17.483 23 AA_A31G33:U49A51_AA A 31 ? A 51 ? A 33 ? A 49 ? 1 A G 33 1_555 A U 49 1_555 A C 34 1_555 A G 48 1_555 -0.213 -0.943 3.437 -0.141 -8.979 44.495 -0.364 0.263 3.553 -11.716 0.183 45.347 24 AA_G33C34:G48U49_AA A 33 ? A 49 ? A 34 ? A 48 ? 1 A C 34 1_555 A G 48 1_555 A G 35 1_555 A C 47 1_555 0.228 -0.720 4.583 3.814 17.798 30.288 -4.781 0.392 3.626 30.817 -6.604 35.227 25 AA_C34G35:C47G48_AA A 34 ? A 48 ? A 35 ? A 47 ? 1 A G 35 1_555 A C 47 1_555 A U 36 1_555 A G 46 1_555 0.071 -0.916 2.743 -5.101 5.217 32.876 -2.277 -0.803 2.533 9.079 8.878 33.654 26 AA_G35U36:G46C47_AA A 35 ? A 47 ? A 36 ? A 46 ? 1 A U 36 1_555 A G 46 1_555 A C 37 1_555 A G 45 1_555 -0.582 -2.122 3.734 -4.479 -2.241 24.058 -4.166 -0.271 3.953 -5.304 10.598 24.566 27 AA_U36C37:G45G46_AA A 36 ? A 46 ? A 37 ? A 45 ? 1 A C 37 1_555 A G 45 1_555 A A 39 1_555 A A 43 1_555 0.449 0.175 5.512 36.505 -15.527 90.844 0.576 0.783 5.337 -10.512 -24.715 97.363 28 AA_C37A39:A43G45_AA A 37 ? A 45 ? A 39 ? A 43 ? #