data_1P5P # _entry.id 1P5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P5P pdb_00001p5p 10.2210/pdb1p5p/pdb RCSB RCSB019039 ? ? WWPDB D_1000019039 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-04 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P5P _pdbx_database_status.recvd_initial_deposition_date 2003-04-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lukavsky, P.J.' 1 'Kim, I.' 2 'Otto, G.A.' 3 'Puglisi, J.D.' 4 # _citation.id primary _citation.title 'Structure of HCV IRES domain II determined by NMR.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 1033 _citation.page_last 1038 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14578934 _citation.pdbx_database_id_DOI 10.1038/nsb1004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lukavsky, P.J.' 1 ? primary 'Kim, I.' 2 ? primary 'Otto, G.A.' 3 ? primary 'Puglisi, J.D.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 77-MER _entity.formula_weight 24776.691 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'HCV IRES domain II (residues 45-117)' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC _entity_poly.pdbx_seq_one_letter_code_can GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 G n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 A n 1 12 A n 1 13 C n 1 14 U n 1 15 A n 1 16 C n 1 17 U n 1 18 G n 1 19 U n 1 20 C n 1 21 U n 1 22 U n 1 23 C n 1 24 A n 1 25 C n 1 26 G n 1 27 C n 1 28 A n 1 29 G n 1 30 A n 1 31 A n 1 32 A n 1 33 G n 1 34 C n 1 35 G n 1 36 U n 1 37 C n 1 38 U n 1 39 A n 1 40 G n 1 41 C n 1 42 C n 1 43 A n 1 44 U n 1 45 G n 1 46 G n 1 47 C n 1 48 G n 1 49 U n 1 50 U n 1 51 A n 1 52 G n 1 53 U n 1 54 A n 1 55 U n 1 56 G n 1 57 A n 1 58 G n 1 59 U n 1 60 G n 1 61 U n 1 62 C n 1 63 G n 1 64 U n 1 65 G n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 C n 1 71 U n 1 72 C n 1 73 C n 1 74 A n 1 75 G n 1 76 C n 1 77 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized by in vitro transcription from linearized plasmid DNA using T7 RNA polymerase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 G 2 2 2 G GUA A . n A 1 3 C 3 3 3 C CYT A . n A 1 4 U 4 4 4 U URI A . n A 1 5 G 5 5 5 G GUA A . n A 1 6 U 6 6 6 U URI A . n A 1 7 G 7 7 7 G GUA A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 G 9 9 9 G GUA A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 A 11 11 11 A ADE A . n A 1 12 A 12 12 12 A ADE A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 U 14 14 14 U URI A . n A 1 15 A 15 15 15 A ADE A . n A 1 16 C 16 16 16 C CYT A . n A 1 17 U 17 17 17 U URI A . n A 1 18 G 18 18 18 G GUA A . n A 1 19 U 19 19 19 U URI A . n A 1 20 C 20 20 20 C CYT A . n A 1 21 U 21 21 21 U URI A . n A 1 22 U 22 22 22 U URI A . n A 1 23 C 23 23 23 C CYT A . n A 1 24 A 24 24 24 A ADE A . n A 1 25 C 25 25 25 C CYT A . n A 1 26 G 26 26 26 G GUA A . n A 1 27 C 27 27 27 C CYT A . n A 1 28 A 28 28 28 A ADE A . n A 1 29 G 29 29 29 G GUA A . n A 1 30 A 30 30 30 A ADE A . n A 1 31 A 31 31 31 A ADE A . n A 1 32 A 32 32 32 A ADE A . n A 1 33 G 33 33 33 G GUA A . n A 1 34 C 34 34 34 C CYT A . n A 1 35 G 35 35 35 G GUA A . n A 1 36 U 36 36 36 U URI A . n A 1 37 C 37 37 37 C CYT A . n A 1 38 U 38 38 38 U URI A . n A 1 39 A 39 39 39 A ADE A . n A 1 40 G 40 40 40 G GUA A . n A 1 41 C 41 41 41 C CYT A . n A 1 42 C 42 42 42 C CYT A . n A 1 43 A 43 43 43 A ADE A . n A 1 44 U 44 44 44 U URI A . n A 1 45 G 45 45 45 G GUA A . n A 1 46 G 46 46 46 G GUA A . n A 1 47 C 47 47 47 C CYT A . n A 1 48 G 48 48 48 G GUA A . n A 1 49 U 49 49 49 U URI A . n A 1 50 U 50 50 50 U URI A . n A 1 51 A 51 51 51 A ADE A . n A 1 52 G 52 52 52 G GUA A . n A 1 53 U 53 53 53 U URI A . n A 1 54 A 54 54 54 A ADE A . n A 1 55 U 55 55 55 U URI A . n A 1 56 G 56 56 56 G GUA A . n A 1 57 A 57 57 57 A ADE A . n A 1 58 G 58 58 58 G GUA A . n A 1 59 U 59 59 59 U URI A . n A 1 60 G 60 60 60 G GUA A . n A 1 61 U 61 61 61 U URI A . n A 1 62 C 62 62 62 C CYT A . n A 1 63 G 63 63 63 G GUA A . n A 1 64 U 64 64 64 U URI A . n A 1 65 G 65 65 65 G GUA A . n A 1 66 C 66 66 66 C CYT A . n A 1 67 A 67 67 67 A ADE A . n A 1 68 G 68 68 68 G GUA A . n A 1 69 C 69 69 69 C CYT A . n A 1 70 C 70 70 70 C CYT A . n A 1 71 U 71 71 71 U URI A . n A 1 72 C 72 72 72 C CYT A . n A 1 73 C 73 73 73 C CYT A . n A 1 74 A 74 74 74 A ADE A . n A 1 75 G 75 75 75 G GUA A . n A 1 76 C 76 76 76 C CYT A . n A 1 77 C 77 77 77 C CYT A . n # _exptl.entry_id 1P5P _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1P5P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1P5P _struct.title 'Solution Structure of HCV IRES Domain II (minimized average structure)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1P5P _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, tRNA, LOOP E MOTIF, HAIRPIN LOOP, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1P5P _struct_ref.pdbx_db_accession 1P5P _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1P5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1P5P _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 77 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 77 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 1 A C 77 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 76 N3 ? ? A G 2 A C 76 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog3 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 75 N1 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 75 O6 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 75 N2 ? ? A C 3 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 74 N1 ? ? A U 4 A A 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 74 N6 ? ? A U 4 A A 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 5 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 7 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 71 N3 ? ? A A 8 A U 71 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 9 A C 70 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog16 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 10 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 16 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 17 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 17 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 18 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 19 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 19 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A U 19 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 19 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 20 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 21 N3 ? ? ? 1_555 A C 62 N3 ? ? A U 21 A C 62 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog33 hydrog ? ? A U 21 O4 ? ? ? 1_555 A C 62 N4 ? ? A U 21 A C 62 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog34 hydrog ? ? A U 22 O4 ? ? ? 1_555 A U 61 N3 ? ? A U 22 A U 61 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog35 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 23 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 24 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 24 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 25 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 26 N7 ? ? ? 1_555 A A 57 N6 ? ? A G 26 A A 57 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 27 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 28 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 28 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 54 N7 ? ? A G 29 A A 54 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog50 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 29 A A 54 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog51 hydrog ? ? A G 29 N2 ? ? ? 1_555 A U 55 O4 ? ? A G 29 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog52 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 53 O2 ? ? A A 30 A U 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog53 hydrog ? ? A A 30 N7 ? ? ? 1_555 A U 53 N3 ? ? A A 30 A U 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog54 hydrog ? ? A A 31 N6 ? ? ? 1_555 A A 51 N7 ? ? A A 31 A A 51 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog55 hydrog ? ? A A 31 N7 ? ? ? 1_555 A A 51 N6 ? ? A A 31 A A 51 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog56 hydrog ? ? A A 32 N6 ? ? ? 1_555 A U 50 O2 ? ? A A 32 A U 50 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog57 hydrog ? ? A G 33 N1 ? ? ? 1_555 A U 49 O2 ? ? A G 33 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? A G 33 O6 ? ? ? 1_555 A U 49 N3 ? ? A G 33 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog59 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 34 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 36 O2 ? ? ? 1_555 A G 46 N2 ? ? A U 36 A G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog66 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 37 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 38 O2 ? ? ? 1_555 A A 43 N6 ? ? A U 38 A A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog70 hydrog ? ? A U 38 O2 ? ? ? 1_555 A G 45 N1 ? ? A U 38 A G 45 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog71 hydrog ? ? A G 52 N2 ? ? ? 1_555 A U 53 O4 ? ? A G 52 A U 53 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_nmr_ensemble.entry_id 1P5P _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'minimized average structure' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1P5P _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '96% D2O, 4% H2O' 2 ;0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '100% D2O' 3 ;0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '96% D2O, 4% H2O' 4 ;0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride ; '100% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K 2 298 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K 3 303 ambient 6.40 '100mM NaCl, 5mM MgCl2' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 2 '2D S-NOESY' 2 2 3 '2D NOESY' 3 2 3 DQF-COSY 4 2 3 '2D HP-COSY' 5 4 3 3D_13C-separated_NOESY 6 4 3 '3D HCP' 7 4 3 '3D HMQC-TOCSY' # _pdbx_nmr_details.entry_id 1P5P _pdbx_nmr_details.text ;The structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings ; # _pdbx_nmr_refine.entry_id 1P5P _pdbx_nmr_refine.method 'see reference above' _pdbx_nmr_refine.details 'see reference above' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1C processing Varian 1 Sparky 3 'data analysis' 'Goddard, T.D. & Kneller D.G.' 2 X-PLOR 3.1 refinement 'Brunger, A.T.' 3 CNS 1.1 refinement 'Brunger, A.T. et al' 4 PALES 1 refinement 'Zweckstetter, M. & Bax, A.' 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P5P 'double helix' 1P5P 'a-form double helix' 1P5P 'hairpin loop' 1P5P 'bulge loop' 1P5P 'mismatched base pair' 1P5P 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 77 1_555 0.657 -0.069 0.814 39.488 -39.066 -19.186 1 A_G1:C77_A A 1 ? A 77 ? ? ? 1 A G 2 1_555 A C 76 1_555 0.554 -0.119 0.390 19.262 -34.950 -16.123 2 A_G2:C76_A A 2 ? A 76 ? ? ? 1 A C 3 1_555 A G 75 1_555 -0.445 -0.117 0.273 11.056 -27.709 3.096 3 A_C3:G75_A A 3 ? A 75 ? 19 1 1 A U 4 1_555 A A 74 1_555 -0.104 -0.251 0.763 12.583 -16.746 2.342 4 A_U4:A74_A A 4 ? A 74 ? 20 1 1 A G 5 1_555 A C 73 1_555 0.193 -0.164 -0.284 -14.395 -18.852 3.521 5 A_G5:C73_A A 5 ? A 73 ? 19 1 1 A G 7 1_555 A C 72 1_555 0.447 -0.061 -0.099 -11.595 -14.621 -1.541 6 A_G7:C72_A A 7 ? A 72 ? 19 1 1 A A 8 1_555 A U 71 1_555 -0.449 -0.154 0.677 -3.116 -20.167 17.558 7 A_A8:U71_A A 8 ? A 71 ? ? 1 1 A G 9 1_555 A C 70 1_555 0.438 0.235 -0.095 -9.062 -36.805 25.873 8 A_G9:C70_A A 9 ? A 70 ? ? 1 1 A G 10 1_555 A C 69 1_555 0.455 -0.167 0.628 2.070 -13.000 -1.539 9 A_G10:C69_A A 10 ? A 69 ? 19 1 1 A C 16 1_555 A G 68 1_555 -0.365 0.010 -0.012 9.301 -21.289 6.308 10 A_C16:G68_A A 16 ? A 68 ? 19 1 1 A U 17 1_555 A A 67 1_555 0.624 -0.234 0.186 8.325 -20.389 9.713 11 A_U17:A67_A A 17 ? A 67 ? 20 1 1 A G 18 1_555 A C 66 1_555 0.239 -0.267 -0.180 4.299 -25.959 -4.614 12 A_G18:C66_A A 18 ? A 66 ? 19 1 1 A U 19 1_555 A G 65 1_555 2.166 -0.567 -0.345 -4.057 -14.071 -11.336 13 A_U19:G65_A A 19 ? A 65 ? 28 ? 1 A C 20 1_555 A G 63 1_555 -0.191 -0.219 -0.499 -6.764 -16.517 7.638 14 A_C20:G63_A A 20 ? A 63 ? 19 1 1 A U 21 1_555 A C 62 1_555 -0.171 -1.597 0.252 15.260 -16.444 19.310 15 A_U21:C62_A A 21 ? A 62 ? 18 1 1 A U 22 1_555 A U 61 1_555 -0.908 -1.542 -1.010 -3.296 -27.643 8.840 16 A_U22:U61_A A 22 ? A 61 ? ? ? 1 A C 23 1_555 A G 60 1_555 -0.401 -0.470 -1.087 -0.277 -19.702 5.609 17 A_C23:G60_A A 23 ? A 60 ? 19 1 1 A A 24 1_555 A U 59 1_555 -0.383 -0.365 -0.357 -5.220 -11.442 1.340 18 A_A24:U59_A A 24 ? A 59 ? 20 1 1 A C 25 1_555 A G 58 1_555 -0.300 -0.157 -0.442 14.771 -6.781 -2.653 19 A_C25:G58_A A 25 ? A 58 ? 19 1 1 A G 26 1_555 A A 57 1_555 1.375 -5.539 0.207 29.374 -3.590 64.796 20 A_G26:A57_A A 26 ? A 57 ? ? ? 1 A C 27 1_555 A G 56 1_555 -0.214 -0.280 -0.679 2.940 -22.949 -3.402 21 A_C27:G56_A A 27 ? A 56 ? 19 1 1 A A 28 1_555 A U 55 1_555 0.161 -0.100 -1.581 -38.622 4.736 -12.160 22 A_A28:U55_A A 28 ? A 55 ? 20 1 1 A G 29 1_555 A A 54 1_555 6.537 -3.362 -1.006 2.443 6.317 -9.546 23 A_G29:A54_A A 29 ? A 54 ? 11 9 1 A A 30 1_555 A U 53 1_555 -3.894 -1.488 -0.698 -2.163 -14.227 -105.300 24 A_A30:U53_A A 30 ? A 53 ? 24 4 1 A A 31 1_555 A A 51 1_555 -5.800 4.876 0.206 -17.440 0.952 -173.980 25 A_A31:A51_A A 31 ? A 51 ? 2 8 1 A A 32 1_555 A U 50 1_555 -6.782 -4.189 -0.806 14.652 -12.427 5.113 26 A_A32:U50_A A 32 ? A 50 ? ? 5 1 A G 33 1_555 A U 49 1_555 -2.258 -0.495 0.202 10.420 -6.232 -0.209 27 A_G33:U49_A A 33 ? A 49 ? 28 ? 1 A C 34 1_555 A G 48 1_555 -0.207 -0.133 -0.837 12.114 -16.144 6.155 28 A_C34:G48_A A 34 ? A 48 ? 19 1 1 A G 35 1_555 A C 47 1_555 0.350 -0.370 -1.269 -3.007 -8.029 1.783 29 A_G35:C47_A A 35 ? A 47 ? 19 1 1 A U 36 1_555 A G 46 1_555 0.827 0.089 -1.489 18.093 -7.453 4.881 30 A_U36:G46_A A 36 ? A 46 ? ? ? 1 A C 37 1_555 A G 45 1_555 -0.400 -0.100 -0.298 -7.565 -0.494 1.674 31 A_C37:G45_A A 37 ? A 45 ? 19 1 1 A U 38 1_555 A A 43 1_555 4.605 -4.624 -2.430 10.405 26.128 -37.530 32 A_U38:A43_A A 38 ? A 43 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 77 1_555 A G 2 1_555 A C 76 1_555 0.727 -0.865 3.852 5.099 12.005 34.859 -3.206 -0.355 3.448 19.226 -8.167 37.148 1 AA_G1G2:C76C77_AA A 1 ? A 77 ? A 2 ? A 76 ? 1 A G 2 1_555 A C 76 1_555 A C 3 1_555 A G 75 1_555 1.825 -1.125 3.054 5.063 -7.957 38.933 -0.730 -2.084 3.412 -11.729 -7.464 40.016 2 AA_G2C3:G75C76_AA A 2 ? A 76 ? A 3 ? A 75 ? 1 A C 3 1_555 A G 75 1_555 A U 4 1_555 A A 74 1_555 0.425 -1.279 3.193 -6.324 0.948 32.337 -2.410 -1.782 3.020 1.682 11.217 32.946 3 AA_C3U4:A74G75_AA A 3 ? A 75 ? A 4 ? A 74 ? 1 A U 4 1_555 A A 74 1_555 A G 5 1_555 A C 73 1_555 -0.206 -1.618 4.288 5.327 0.172 31.408 -2.989 1.644 4.188 0.315 -9.753 31.846 4 AA_U4G5:C73A74_AA A 4 ? A 74 ? A 5 ? A 73 ? 1 A G 5 1_555 A C 73 1_555 A G 7 1_555 A C 72 1_555 -0.963 -1.210 3.227 1.785 5.078 33.631 -2.836 1.916 2.964 8.706 -3.061 34.047 5 AA_G5G7:C72C73_AA A 5 ? A 73 ? A 7 ? A 72 ? 1 A G 7 1_555 A C 72 1_555 A A 8 1_555 A U 71 1_555 0.662 -1.152 2.854 -2.198 -1.649 33.672 -1.749 -1.451 2.858 -2.841 3.787 33.780 6 AA_G7A8:U71C72_AA A 7 ? A 72 ? A 8 ? A 71 ? 1 A A 8 1_555 A U 71 1_555 A G 9 1_555 A C 70 1_555 -0.063 -0.229 3.323 7.096 12.257 35.590 -1.905 0.996 3.019 19.144 -11.083 38.219 7 AA_A8G9:C70U71_AA A 8 ? A 71 ? A 9 ? A 70 ? 1 A G 9 1_555 A C 70 1_555 A G 10 1_555 A C 69 1_555 -0.587 -0.769 2.669 -8.476 10.417 31.113 -2.675 -0.092 2.373 18.384 14.959 33.822 8 AA_G9G10:C69C70_AA A 9 ? A 70 ? A 10 ? A 69 ? 1 A C 16 1_555 A G 68 1_555 A U 17 1_555 A A 67 1_555 -0.299 -0.949 3.185 -2.394 15.819 36.040 -3.145 0.182 2.577 24.156 3.656 39.324 9 AA_C16U17:A67G68_AA A 16 ? A 68 ? A 17 ? A 67 ? 1 A U 17 1_555 A A 67 1_555 A G 18 1_555 A C 66 1_555 -0.921 -0.719 3.201 3.767 14.693 31.105 -3.305 2.089 2.495 25.581 -6.559 34.524 10 AA_U17G18:C66A67_AA A 17 ? A 67 ? A 18 ? A 66 ? 1 A G 18 1_555 A C 66 1_555 A U 19 1_555 A G 65 1_555 0.551 -0.839 3.274 2.917 -2.812 49.687 -0.788 -0.439 3.339 -3.340 -3.465 49.841 11 AA_G18U19:G65C66_AA A 18 ? A 66 ? A 19 ? A 65 ? 1 A U 19 1_555 A G 65 1_555 A C 20 1_555 A G 63 1_555 0.181 -1.542 3.146 3.732 11.232 17.643 -8.068 0.797 1.842 32.318 -10.738 21.219 12 AA_U19C20:G63G65_AA A 19 ? A 65 ? A 20 ? A 63 ? 1 A C 20 1_555 A G 63 1_555 A U 21 1_555 A C 62 1_555 0.580 0.772 2.734 -9.571 15.354 29.685 -0.760 -2.255 2.529 27.039 16.855 34.658 13 AA_C20U21:C62G63_AA A 20 ? A 63 ? A 21 ? A 62 ? 1 A U 21 1_555 A C 62 1_555 A U 22 1_555 A U 61 1_555 -0.583 -0.413 4.142 8.276 10.687 39.809 -1.954 1.881 3.728 15.174 -11.751 41.953 14 AA_U21U22:U61C62_AA A 21 ? A 62 ? A 22 ? A 61 ? 1 A U 22 1_555 A U 61 1_555 A C 23 1_555 A G 60 1_555 -0.893 -0.495 2.988 -1.344 10.677 33.720 -2.231 1.292 2.742 17.850 2.246 35.348 15 AA_U22C23:G60U61_AA A 22 ? A 61 ? A 23 ? A 60 ? 1 A C 23 1_555 A G 60 1_555 A A 24 1_555 A U 59 1_555 -0.166 0.342 3.571 -5.309 21.098 25.912 -3.339 -0.703 2.997 39.373 9.907 33.714 16 AA_C23A24:U59G60_AA A 23 ? A 60 ? A 24 ? A 59 ? 1 A A 24 1_555 A U 59 1_555 A C 25 1_555 A G 58 1_555 0.433 -1.085 2.782 0.166 -2.292 38.458 -1.400 -0.638 2.841 -3.476 -0.252 38.524 17 AA_A24C25:G58U59_AA A 24 ? A 59 ? A 25 ? A 58 ? 1 A C 25 1_555 A G 58 1_555 A G 26 1_555 A A 57 1_555 2.216 -3.856 0.116 -161.908 2.347 151.561 -1.929 -1.089 -0.439 1.177 81.227 175.578 18 AA_C25G26:A57G58_AA A 25 ? A 58 ? A 26 ? A 57 ? 1 A G 26 1_555 A A 57 1_555 A C 27 1_555 A G 56 1_555 0.505 -4.364 -2.846 140.014 -95.173 147.569 -2.373 -0.533 -1.935 -47.706 -70.182 177.015 19 AA_G26C27:G56A57_AA A 26 ? A 57 ? A 27 ? A 56 ? 1 A C 27 1_555 A G 56 1_555 A A 28 1_555 A U 55 1_555 0.006 -1.768 5.617 3.021 4.460 27.570 -5.402 1.178 5.242 9.247 -6.263 28.081 20 AA_C27A28:U55G56_AA A 27 ? A 56 ? A 28 ? A 55 ? 1 A A 28 1_555 A U 55 1_555 A G 29 1_555 A A 54 1_555 -0.319 0.133 2.279 -3.745 -7.015 65.471 0.321 0.188 2.270 -6.461 3.450 65.899 21 AA_A28G29:A54U55_AA A 28 ? A 55 ? A 29 ? A 54 ? 1 A G 29 1_555 A A 54 1_555 A A 30 1_555 A U 53 1_555 -4.296 -1.450 3.399 1.673 13.359 -3.334 -13.705 -15.324 2.733 -75.565 9.465 -13.868 22 AA_G29A30:U53A54_AA A 29 ? A 54 ? A 30 ? A 53 ? 1 A A 30 1_555 A U 53 1_555 A A 31 1_555 A A 51 1_555 1.738 -1.154 3.170 0.072 -12.288 84.085 -0.573 -1.287 3.285 -9.132 -0.053 84.812 23 AA_A30A31:A51U53_AA A 30 ? A 53 ? A 31 ? A 51 ? 1 A A 31 1_555 A A 51 1_555 A A 32 1_555 A U 50 1_555 -1.201 1.316 2.889 -1.877 6.480 -58.757 -1.618 -1.300 2.707 -6.580 -1.906 -59.108 24 AA_A31A32:U50A51_AA A 31 ? A 51 ? A 32 ? A 50 ? 1 A A 32 1_555 A U 50 1_555 A G 33 1_555 A U 49 1_555 0.392 -0.651 3.528 -12.399 0.890 56.276 -0.728 -1.124 3.372 0.931 12.970 57.523 25 AA_A32G33:U49U50_AA A 32 ? A 50 ? A 33 ? A 49 ? 1 A G 33 1_555 A U 49 1_555 A C 34 1_555 A G 48 1_555 0.030 -1.442 3.162 6.225 1.263 38.674 -2.296 0.671 3.083 1.892 -9.322 39.172 26 AA_G33C34:G48U49_AA A 33 ? A 49 ? A 34 ? A 48 ? 1 A C 34 1_555 A G 48 1_555 A G 35 1_555 A C 47 1_555 -0.367 -0.666 4.041 0.978 18.617 30.210 -4.351 0.776 3.113 32.161 -1.690 35.384 27 AA_C34G35:C47G48_AA A 34 ? A 48 ? A 35 ? A 47 ? 1 A G 35 1_555 A C 47 1_555 A U 36 1_555 A G 46 1_555 0.488 -1.134 2.891 0.631 -4.020 34.037 -1.353 -0.739 3.009 -6.837 -1.073 34.272 28 AA_G35U36:G46C47_AA A 35 ? A 47 ? A 36 ? A 46 ? 1 A U 36 1_555 A G 46 1_555 A C 37 1_555 A G 45 1_555 0.052 -2.330 4.283 -5.823 3.392 30.436 -5.159 -1.508 3.929 6.364 10.925 31.156 29 AA_U36C37:G45G46_AA A 36 ? A 46 ? A 37 ? A 45 ? 1 A C 37 1_555 A G 45 1_555 A U 38 1_555 A A 43 1_555 0.347 -0.595 3.034 14.726 -9.579 71.981 -0.206 0.156 3.096 -8.033 -12.349 73.811 30 AA_C37U38:A43G45_AA A 37 ? A 45 ? A 38 ? A 43 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 800 # _atom_sites.entry_id 1P5P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_