HEADER CYTOKINE 28-APR-03 1P5S TITLE STRUCTURE AND FUNCTION OF THE CALPONIN-HOMOLOGY DOMAIN OF AN IQGAP TITLE 2 PROTEIN FROM SCHIZOSACCHAROMYCES POMBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING-LIKE PROTEIN RNG2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CALPONIN-HOMOLOGY DOMAIN; COMPND 5 SYNONYM: RING ASSEMBLY PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: RNG2 OR SPAC4F8.13C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS ALPHA-HELICAL BUNDLE, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.WANG,M.K.BALASUBRAMANIAN,T.DOKLAND REVDAT 4 14-FEB-24 1P5S 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1P5S 1 VERSN REVDAT 2 27-JUL-04 1P5S 1 JRNL REVDAT 1 11-MAY-04 1P5S 0 JRNL AUTH C.H.WANG,M.K.BALASUBRAMANIAN,T.DOKLAND JRNL TITL STRUCTURE, CRYSTAL PACKING AND MOLECULAR DYNAMICS OF THE JRNL TITL 2 CALPONIN-HOMOLOGY DOMAIN OF SCHIZOSACCHAROMYCES POMBE RNG2. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1396 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15272162 JRNL DOI 10.1107/S0907444904012983 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 6571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.570 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1276 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1682 ; 1.107 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 1.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 184 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 908 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 3 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 718 ; 0.351 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 753 ; 2.573 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1194 ; 3.663 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 523 ; 4.052 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 488 ; 5.881 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000019042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.653 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 20.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 16.45 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.72 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SULFUR SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.33300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 PRO A -10 REMARK 465 GLY A -9 REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 GLN A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 VAL A 18 REMARK 465 GLY A 19 REMARK 465 THR A 20 REMARK 465 LYS A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 THR A 25 REMARK 465 ARG A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 GLN A 31 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 37 CB REMARK 480 ASP A 39 CB REMARK 480 GLY A 56 N O REMARK 480 THR A 57 C O REMARK 480 VAL A 79 CB REMARK 480 GLN A 80 CA REMARK 480 LYS A 89 CA CB REMARK 480 TYR A 92 CB REMARK 480 GLU A 95 O REMARK 480 HIS A 100 CB REMARK 480 SER A 101 O REMARK 480 ASN A 105 CA CB REMARK 480 ILE A 111 O REMARK 480 GLY A 115 CA REMARK 480 HIS A 121 CA REMARK 480 ASP A 126 CB REMARK 480 GLY A 130 CA REMARK 480 ASN A 132 CB REMARK 480 PRO A 154 O REMARK 480 ASN A 162 O REMARK 480 LEU A 163 O REMARK 480 PHE A 165 CB REMARK 480 ASP A 167 CB REMARK 480 ASP A 169 CB REMARK 480 VAL A 170 CB REMARK 480 SER A 180 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 92 23.10 -157.96 REMARK 500 ASN A 132 62.90 -155.56 REMARK 500 ASP A 151 50.41 39.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 193 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 38 O REMARK 620 2 CYS A 42 SG 82.0 REMARK 620 3 HOH A 228 O 124.2 142.3 REMARK 620 4 HOH A 244 O 137.7 120.2 60.8 REMARK 620 5 HOH A 246 O 91.5 171.0 46.7 61.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 192 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 50 O REMARK 620 2 TRP A 50 NE1 96.3 REMARK 620 3 GLU A 53 OE2 95.5 96.8 REMARK 620 4 CYS A 54 SG 89.7 95.5 166.0 REMARK 620 5 CYS A 54 N 57.6 151.4 97.1 74.8 REMARK 620 6 HOH A 263 O 113.5 149.9 76.7 89.3 58.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 194 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HOH A 260 O 109.7 REMARK 620 3 HOH A 282 O 107.7 141.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 191 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 120 O REMARK 620 2 HIS A 121 ND1 78.3 REMARK 620 3 CYS A 139 SG 87.5 109.0 REMARK 620 4 CYS A 139 O 91.6 167.3 77.8 REMARK 620 5 HOH A 236 O 106.3 83.3 163.5 92.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P2X RELATED DB: PDB REMARK 900 COMPARISON OF CLASS I ALDOLASE BINDING SITE ARCHITECTURE BASED ON REMARK 900 THE CRYSTAL STRUCTURE OF 2-DEOXYRIBOSE-5-PHOSPHATE ALDOLASE REMARK 900 DETERMINED AT 0.99 ANGSTROM RESOLUTION DBREF 1P5S A 1 190 UNP O14188 RNG2_SCHPO 1 190 SEQADV 1P5S GLY A -12 UNP O14188 CLONING ARTIFACT SEQADV 1P5S SER A -11 UNP O14188 CLONING ARTIFACT SEQADV 1P5S PRO A -10 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -9 UNP O14188 CLONING ARTIFACT SEQADV 1P5S ILE A -8 UNP O14188 CLONING ARTIFACT SEQADV 1P5S SER A -7 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -6 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -5 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -4 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -3 UNP O14188 CLONING ARTIFACT SEQADV 1P5S GLY A -2 UNP O14188 CLONING ARTIFACT SEQADV 1P5S ILE A -1 UNP O14188 CLONING ARTIFACT SEQADV 1P5S LEU A 0 UNP O14188 CLONING ARTIFACT SEQRES 1 A 203 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE LEU SEQRES 2 A 203 MET ASP VAL ASN VAL GLY LEU SER ARG LEU GLN SER GLN SEQRES 3 A 203 ALA GLY ALA PRO VAL GLY THR LYS GLY SER ASN THR ARG SEQRES 4 A 203 LEU ALA ALA LYS GLN ARG GLU THR LEU GLN ALA TYR ASP SEQRES 5 A 203 TYR LEU CYS ARG VAL ASP GLU ALA LYS LYS TRP ILE GLU SEQRES 6 A 203 GLU CYS LEU GLY THR ASP LEU GLY PRO THR SER THR PHE SEQRES 7 A 203 GLU GLN SER LEU ARG ASN GLY VAL VAL LEU ALA LEU LEU SEQRES 8 A 203 VAL GLN LYS PHE GLN PRO ASP LYS LEU ILE LYS ILE PHE SEQRES 9 A 203 TYR SER ASN GLU LEU GLN PHE ARG HIS SER ASP ASN ILE SEQRES 10 A 203 ASN LYS PHE LEU ASP PHE ILE HIS GLY ILE GLY LEU PRO SEQRES 11 A 203 GLU ILE PHE HIS PHE GLU LEU THR ASP ILE TYR GLU GLY SEQRES 12 A 203 LYS ASN LEU PRO LYS VAL ILE TYR CYS ILE HIS ALA LEU SEQRES 13 A 203 SER TYR PHE LEU SER MET GLN ASP LEU ALA PRO PRO LEU SEQRES 14 A 203 ILE LYS SER ASP GLU ASN LEU SER PHE THR ASP GLU ASP SEQRES 15 A 203 VAL SER ILE ILE VAL ARG ARG LEU ARG GLN SER ASN VAL SEQRES 16 A 203 ILE LEU PRO ASN PHE LYS ALA LEU HET HG A 191 1 HET HG A 192 1 HET HG A 193 1 HET HG A 194 1 HETNAM HG MERCURY (II) ION FORMUL 2 HG 4(HG 2+) FORMUL 6 HOH *145(H2 O) HELIX 1 1 ARG A 32 GLY A 56 1 25 HELIX 2 2 PRO A 61 SER A 63 5 3 HELIX 3 3 THR A 64 ARG A 70 1 7 HELIX 4 4 GLY A 72 GLN A 83 1 12 HELIX 5 5 ARG A 99 ILE A 114 1 16 HELIX 6 6 PRO A 117 HIS A 121 5 5 HELIX 7 7 GLU A 123 GLU A 129 1 7 HELIX 8 8 ASN A 132 GLN A 150 1 19 HELIX 9 9 THR A 166 SER A 180 1 15 LINK O TYR A 38 HG HG A 193 1555 1555 3.41 LINK SG CYS A 42 HG HG A 193 1555 1555 2.48 LINK O TRP A 50 HG HG A 192 1555 1555 2.71 LINK NE1 TRP A 50 HG HG A 192 1555 1555 3.04 LINK OE2 GLU A 53 HG HG A 192 1555 1555 2.21 LINK SG CYS A 54 HG HG A 192 1555 1555 2.17 LINK N CYS A 54 HG HG A 192 1555 1555 3.30 LINK NE2 HIS A 100 HG HG A 194 1555 1555 3.38 LINK O PHE A 120 HG HG A 191 1555 1555 2.68 LINK ND1 HIS A 121 HG HG A 191 1555 1555 3.17 LINK SG CYS A 139 HG HG A 191 1555 1555 2.35 LINK O CYS A 139 HG HG A 191 1555 1555 3.05 LINK HG HG A 191 O HOH A 236 1555 1555 2.25 LINK HG HG A 192 O HOH A 263 1555 1555 3.17 LINK HG HG A 193 O HOH A 228 1555 1555 3.47 LINK HG HG A 193 O HOH A 244 1555 1555 2.90 LINK HG HG A 193 O HOH A 246 1555 1555 2.60 LINK HG HG A 194 O HOH A 260 1555 1555 2.62 LINK HG HG A 194 O HOH A 282 1555 1555 2.59 SITE 1 AC1 4 PHE A 120 HIS A 121 CYS A 139 HOH A 236 SITE 1 AC2 3 TRP A 50 GLU A 53 CYS A 54 SITE 1 AC3 4 TYR A 38 CYS A 42 HOH A 244 HOH A 246 SITE 1 AC4 4 PHE A 98 HIS A 100 HOH A 260 HOH A 282 CRYST1 30.884 68.666 35.309 90.00 102.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032379 0.000000 0.007184 0.00000 SCALE2 0.000000 0.014563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029010 0.00000