HEADER CHAPERONE, STRUCTURAL PROTEIN 28-APR-03 1P5V TITLE X-RAY STRUCTURE OF THE CAF1M:CAF1 CHAPERONE:SUBUNIT PREASSEMBLY TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN CAF1M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-258 OF SWS P26926; COMPND 5 SYNONYM: CAF1M CHAPERONE; CAF1M; CAPSULE PROTEIN FRACTION 1; F1 COMPND 6 CHAPERONE PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: F1 CAPSULE ANTIGEN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 35-170 OF SWS P26948; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: HIS-TAGGED FRAGMENT OF F1 CAPSULE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 STRAIN: KIM5; SOURCE 5 GENE: CAF1M; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFM-1-6H; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 13 ORGANISM_TAXID: 632; SOURCE 14 STRAIN: KIM5; SOURCE 15 GENE: CAF1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFM-1-6H KEYWDS CHAPERONE, CHAPERONE-TARGET COMPLEX, CHAPERONE-SUBUNIT COMPLEX, KEYWDS 2 PROTEIN FIBER, DONOR STRAND COMPLEMENTATION, DONOR STRAND EXCHANGE, KEYWDS 3 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.V.ZAVIALOV,J.BERGLUND,A.F.PUDNEY,L.J.FOOKS,T.M.IBRAHIM,S.MACINTYRE, AUTHOR 2 S.D.KNIGHT REVDAT 3 07-MAR-18 1P5V 1 REMARK REVDAT 2 24-FEB-09 1P5V 1 VERSN REVDAT 1 24-JUN-03 1P5V 0 JRNL AUTH A.V.ZAVIALOV,J.BERGLUND,A.F.PUDNEY,L.J.FOOKS,T.M.IBRAHIM, JRNL AUTH 2 S.MACINTYRE,S.D.KNIGHT JRNL TITL STRUCTURE AND BIOGENESIS OF THE CAPSULAR F1 ANTIGEN FROM JRNL TITL 2 YERSINIA PESTIS. PRESERVED FOLDING ENERGY DRIVES FIBER JRNL TITL 3 FORMATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 113 587 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12787500 JRNL DOI 10.1016/S0092-8674(03)00351-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ZAVIALOV,J.BERGLUND,S.D.KNIGHT REMARK 1 TITL OVEREXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF THE F1 ANTIGEN REMARK 1 TITL 3 CAF1MCAF1 CHAPERONESUBUNIT PRE-ASSEMBLY COMPLEX FROM REMARK 1 TITL 4 YERSINIA PESTIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 359 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444902021054 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.V.ZAVIALOV,J.KERSLEY,T.KORPELA,V.P.ZAV'YALOV,S.MACINTYRE, REMARK 1 AUTH 2 S.D.KNIGHT REMARK 1 TITL DONOR STRAND COMPLEMENTATION MECHANISM IN THE BIOGENESIS OF REMARK 1 TITL 2 NON-PILUS SYSTEMS REMARK 1 REF MOL.MICROBIOL. V. 45 983 2002 REMARK 1 REFN ISSN 0950-382X REMARK 1 DOI 10.1046/J.1365-2958.2002.03066.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 32386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1857 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -1.85000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.085 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2569 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2312 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3494 ; 2.218 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5393 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 7.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2885 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 394 ; 0.255 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2624 ; 0.257 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1608 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.263 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 1.324 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2663 ; 2.171 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 922 ; 3.034 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 831 ; 4.621 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 145 REMARK 3 RESIDUE RANGE : B 14 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1677 35.1586 4.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: 0.1071 REMARK 3 T33: 0.0832 T12: -0.0013 REMARK 3 T13: 0.0036 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.7872 L22: 2.4153 REMARK 3 L33: 1.7971 L12: 0.0728 REMARK 3 L13: -0.0506 L23: -1.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0029 S13: 0.0635 REMARK 3 S21: 0.1072 S22: -0.0258 S23: -0.0257 REMARK 3 S31: -0.0976 S32: -0.0103 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5839 47.6792 27.4215 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.1954 REMARK 3 T33: 0.1718 T12: -0.0182 REMARK 3 T13: -0.0434 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.1529 L22: 8.2842 REMARK 3 L33: 2.2161 L12: -0.7653 REMARK 3 L13: -0.2806 L23: 1.9303 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.2845 S13: 0.3711 REMARK 3 S21: 0.8105 S22: 0.0685 S23: -0.3304 REMARK 3 S31: -0.2349 S32: 0.0628 S33: -0.0828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1P5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-01; 06-DEC-01; 16-NOV-01; REMARK 200 02-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF; ESRF; MAX II REMARK 200 BEAMLINE : ID14-2; ID14-4; ID29; I711 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933; 0.9798, 0.9801; 0.9798, REMARK 200 0.9801; 1.076 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220); DOUBLE REMARK 200 CRYSTAL, SI(111) OR SI(311); REMARK 200 SI(311), SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4; REMARK 200 ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; MAD; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS-HCL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 ASN A 52 REMARK 465 LYS A 53 REMARK 465 GLU A 54 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 SER A 57 REMARK 465 GLU A 58 REMARK 465 PRO A 104 REMARK 465 LYS A 105 REMARK 465 ASP A 106 REMARK 465 GLU A 107 REMARK 465 ASP A 108 REMARK 465 ILE A 109 REMARK 465 TRP A 110 REMARK 465 VAL A 111 REMARK 465 ASP A 112 REMARK 465 ASP A 113 REMARK 465 ALA A 114 REMARK 465 THR A 115 REMARK 465 ASN A 116 REMARK 465 LYS A 117 REMARK 465 GLN A 118 REMARK 465 LYS A 119 REMARK 465 PHE A 120 REMARK 465 ASN A 121 REMARK 465 PRO A 122 REMARK 465 ASP A 123 REMARK 465 LYS A 206 REMARK 465 GLY A 207 REMARK 465 LEU A 208 REMARK 465 ALA A 209 REMARK 465 GLY A 210 REMARK 465 ALA A 211 REMARK 465 ARG A 212 REMARK 465 THR A 234 REMARK 465 LEU A 235 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ALA A 83 CB REMARK 470 VAL A 86 CB CG1 CG2 REMARK 470 ARG A 89 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A 90 CB CG OD1 OD2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 GLN A 131 NE2 REMARK 470 LYS A 148 CB CG CD CE NZ REMARK 470 ASP B 33 CB CG OD1 OD2 REMARK 470 ASP B 110 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 32 CB VAL A 32 CG1 -0.135 REMARK 500 ARG A 89 N ARG A 89 CA 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 163 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 70 -13.25 84.38 REMARK 500 ILE B 126 -77.43 -109.23 REMARK 500 LYS B 132 107.71 -15.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 131 LYS B 132 -139.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P5U RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE TERNARY CAF1M:CAF1:CAF1 CHAPERONE:SUBUNIT: REMARK 900 SUBUNIT COMPLEX DBREF 1P5V A 1 235 UNP P26926 CAF1M_YERPE 24 258 DBREF 1P5V B 14 149 UNP P26948 CAF1_YERPE 35 170 SEQADV 1P5V ALA B 3 UNP P26948 EXPRESSION TAG SEQADV 1P5V ASP B 4 UNP P26948 EXPRESSION TAG SEQADV 1P5V LEU B 5 UNP P26948 EXPRESSION TAG SEQADV 1P5V THR B 6 UNP P26948 EXPRESSION TAG SEQADV 1P5V SER B 7 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 8 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 9 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 10 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 11 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 12 UNP P26948 EXPRESSION TAG SEQADV 1P5V HIS B 13 UNP P26948 EXPRESSION TAG SEQRES 1 A 235 ALA GLN PRO ASP ILE LYS PHE ALA SER LYS GLU TYR GLY SEQRES 2 A 235 VAL THR ILE GLY GLU SER ARG ILE ILE TYR PRO LEU ASP SEQRES 3 A 235 ALA ALA GLY VAL MET VAL SER VAL LYS ASN THR GLN ASP SEQRES 4 A 235 TYR PRO VAL LEU ILE GLN SER ARG ILE TYR ASP GLU ASN SEQRES 5 A 235 LYS GLU LYS GLU SER GLU ASP PRO PHE VAL VAL THR PRO SEQRES 6 A 235 PRO LEU PHE ARG LEU ASP ALA LYS GLN GLN ASN SER LEU SEQRES 7 A 235 ARG ILE ALA GLN ALA GLY GLY VAL PHE PRO ARG ASP LYS SEQRES 8 A 235 GLU SER LEU LYS TRP LEU CYS VAL LYS GLY ILE PRO PRO SEQRES 9 A 235 LYS ASP GLU ASP ILE TRP VAL ASP ASP ALA THR ASN LYS SEQRES 10 A 235 GLN LYS PHE ASN PRO ASP LYS ASP VAL GLY VAL PHE VAL SEQRES 11 A 235 GLN PHE ALA ILE ASN ASN CYS ILE LYS LEU LEU VAL ARG SEQRES 12 A 235 PRO ASN GLU LEU LYS GLY THR PRO ILE GLN PHE ALA GLU SEQRES 13 A 235 ASN LEU SER TRP LYS VAL ASP GLY GLY LYS LEU ILE ALA SEQRES 14 A 235 GLU ASN PRO SER PRO PHE TYR MET ASN ILE GLY GLU LEU SEQRES 15 A 235 THR PHE GLY GLY LYS SER ILE PRO SER HIS TYR ILE PRO SEQRES 16 A 235 PRO LYS SER THR TRP ALA PHE ASP LEU PRO LYS GLY LEU SEQRES 17 A 235 ALA GLY ALA ARG ASN VAL SER TRP ARG ILE ILE ASN ASP SEQRES 18 A 235 GLN GLY GLY LEU ASP ARG LEU TYR SER LYS ASN VAL THR SEQRES 19 A 235 LEU SEQRES 1 B 147 ALA ASP LEU THR SER HIS HIS HIS HIS HIS HIS VAL GLU SEQRES 2 B 147 PRO ALA ARG ILE THR LEU THR TYR LYS GLU GLY ALA PRO SEQRES 3 B 147 ILE THR ILE MET ASP ASN GLY ASN ILE ASP THR GLU LEU SEQRES 4 B 147 LEU VAL GLY THR LEU THR LEU GLY GLY TYR LYS THR GLY SEQRES 5 B 147 THR THR SER THR SER VAL ASN PHE THR ASP ALA ALA GLY SEQRES 6 B 147 ASP PRO MET TYR LEU THR PHE THR SER GLN ASP GLY ASN SEQRES 7 B 147 ASN HIS GLN PHE THR THR LYS VAL ILE GLY LYS ASP SER SEQRES 8 B 147 ARG ASP PHE ASP ILE SER PRO LYS VAL ASN GLY GLU ASN SEQRES 9 B 147 LEU VAL GLY ASP ASP VAL VAL LEU ALA THR GLY SER GLN SEQRES 10 B 147 ASP PHE PHE VAL ARG SER ILE GLY SER LYS GLY GLY LYS SEQRES 11 B 147 LEU ALA ALA GLY LYS TYR THR ASP ALA VAL THR VAL THR SEQRES 12 B 147 VAL SER ASN GLN FORMUL 3 HOH *138(H2 O) HELIX 1 1 THR A 150 LEU A 158 5 9 HELIX 2 2 THR B 56 THR B 58 5 3 SHEET 1 525 GLN A 75 GLN A 82 0 SHEET 2 525 VAL A 30 ASN A 36 -1 O VAL A 30 N ILE A 80 SHEET 3 525 SER A 9 ILE A 16 -1 N THR A 15 O LYS A 35 SHEET 4 525 ALA B 17 GLU B 25 -1 N ALA B 17 O ILE A 16 SHEET 5 525 LEU B 42 GLY B 49 -1 O THR B 45 N LYS B 24 SHEET 6 525 SER B 118 GLY B 127 -1 O GLN B 119 N LEU B 48 SHEET 7 525 GLN B 83 LYS B 91 -1 N THR B 85 O GLY B 127 SHEET 8 525 ASP B 97 ILE B 98 -1 O ILE B 98 N GLY B 90 SHEET 9 525 GLN B 83 LYS B 91 -1 N GLY B 90 O ILE B 98 SHEET 10 525 LEU B 72 SER B 76 -1 N LEU B 72 O THR B 86 SHEET 11 525 GLY B 136 SER B 147 -1 N THR B 139 O THR B 75 SHEET 12 525 VAL B 60 THR B 63 -1 O ASN B 61 N THR B 145 SHEET 13 525 LYS B 101 VAL B 102 1 O LYS B 101 N PHE B 62 SHEET 14 525 VAL B 60 THR B 63 1 O VAL B 60 N LYS B 101 SHEET 15 525 GLY B 136 SER B 147 -1 N THR B 143 O THR B 63 SHEET 16 525 ASP A 125 ARG A 143 1 O ASP A 125 N GLY B 136 SHEET 17 525 ARG A 20 PRO A 24 1 O ILE A 21 N LEU A 141 SHEET 18 525 ASP A 125 ARG A 143 1 O LYS A 139 N ILE A 21 SHEET 19 525 SER A 93 ILE A 102 -1 O SER A 93 N VAL A 142 SHEET 20 525 VAL A 42 TYR A 49 -1 O LEU A 43 N ILE A 102 SHEET 21 525 LEU A 67 LEU A 70 -1 O PHE A 68 N ILE A 44 SHEET 22 525 VAL A 42 TYR A 49 -1 O VAL A 42 N LEU A 70 SHEET 23 525 SER A 93 ILE A 102 -1 O TRP A 96 N TYR A 49 SHEET 24 525 ASP A 125 ARG A 143 -1 O ILE A 134 N GLY A 101 SHEET 25 525 ILE B 29 THR B 30 -1 O ILE B 29 N VAL A 126 SHEET 1 10 2 LYS A 166 ASN A 171 0 SHEET 2 10 2 SER A 198 ASP A 203 -1 O SER A 198 N ASN A 171 SHEET 1 13 5 MET A 177 PHE A 184 0 SHEET 2 13 5 TYR A 193 ILE A 194 -1 N ILE A 194 O MET A 177 SHEET 3 13 5 MET A 177 PHE A 184 -1 N MET A 177 O ILE A 194 SHEET 4 13 5 VAL A 214 ILE A 218 -1 O SER A 215 N THR A 183 SHEET 5 13 5 TYR A 229 LYS A 231 -1 N TYR A 229 O TRP A 216 SSBOND 1 CYS A 98 CYS A 137 1555 1555 2.27 CISPEP 1 THR A 64 PRO A 65 0 -8.13 CRYST1 36.000 69.230 69.110 90.00 92.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027778 0.000000 0.001436 0.00000 SCALE2 0.000000 0.014445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014489 0.00000