HEADER DE NOVO PROTEIN 29-APR-03 1P68 TITLE SOLUTION STRUCTURE OF S-824, A DE NOVO DESIGNED FOUR HELIX BUNDLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PROTEIN S-824; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PROTEIN, FOUR HELIX BUNDLE, DE NOVO DESIGN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.WEI,S.KIM,D.FELA,J.BAUM,M.H.HECHT REVDAT 3 23-FEB-22 1P68 1 REMARK REVDAT 2 24-FEB-09 1P68 1 VERSN REVDAT 1 11-NOV-03 1P68 0 JRNL AUTH Y.WEI,S.KIM,D.FELA,J.BAUM,M.H.HECHT JRNL TITL SOLUTION STRUCTURE OF A DE NOVO PROTEIN FROM A DESIGNED JRNL TITL 2 COMBINATORIAL LIBRARY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 13270 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 14593201 JRNL DOI 10.1073/PNAS.1835644100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P68 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000019058. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50MM ACETATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 82 H GLU A 86 1.36 REMARK 500 O ILE A 85 H ILE A 89 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 22 19.93 -152.97 REMARK 500 1 HIS A 24 -52.42 -178.44 REMARK 500 1 HIS A 74 34.51 -155.38 REMARK 500 1 LEU A 75 90.34 -51.23 REMARK 500 1 GLN A 76 68.30 -65.64 REMARK 500 1 THR A 81 -74.16 -69.03 REMARK 500 2 TYR A 2 40.88 -96.96 REMARK 500 2 ASN A 22 10.84 -146.50 REMARK 500 2 HIS A 24 -51.78 -179.13 REMARK 500 2 VAL A 33 -60.25 -90.01 REMARK 500 2 HIS A 74 32.31 -154.97 REMARK 500 2 LEU A 75 88.31 -52.67 REMARK 500 2 GLN A 76 69.70 -67.97 REMARK 500 2 THR A 81 -74.41 -67.45 REMARK 500 2 LEU A 99 -67.20 -96.10 REMARK 500 3 HIS A 24 58.67 179.56 REMARK 500 3 HIS A 74 28.72 -153.82 REMARK 500 3 LEU A 75 85.30 -49.38 REMARK 500 3 THR A 81 -74.23 -69.93 REMARK 500 4 HIS A 24 47.18 179.04 REMARK 500 4 HIS A 74 26.97 -147.19 REMARK 500 4 LEU A 75 91.95 -49.50 REMARK 500 4 GLN A 76 68.23 -64.54 REMARK 500 4 THR A 81 -74.64 -69.69 REMARK 500 5 ASN A 22 12.63 -146.01 REMARK 500 5 HIS A 24 -51.18 -178.32 REMARK 500 5 HIS A 74 30.08 -156.33 REMARK 500 5 LEU A 75 85.25 -50.70 REMARK 500 5 THR A 81 -73.26 -68.67 REMARK 500 5 LEU A 99 -63.02 -100.81 REMARK 500 5 HIS A 101 33.63 -96.59 REMARK 500 6 HIS A 24 -52.65 -175.97 REMARK 500 6 HIS A 74 36.49 -150.92 REMARK 500 6 LEU A 75 85.35 -67.46 REMARK 500 6 GLN A 76 65.75 -68.03 REMARK 500 7 HIS A 24 -48.66 -175.20 REMARK 500 7 HIS A 74 32.71 -152.15 REMARK 500 7 LEU A 75 83.28 -54.65 REMARK 500 7 THR A 81 -74.40 -69.93 REMARK 500 8 ASN A 22 -20.12 -145.41 REMARK 500 8 HIS A 24 -53.13 -178.86 REMARK 500 8 SER A 53 -168.32 -64.59 REMARK 500 8 LEU A 75 92.08 -51.92 REMARK 500 8 GLN A 76 69.14 -64.30 REMARK 500 8 THR A 81 -74.56 -68.02 REMARK 500 9 TYR A 2 54.61 -99.32 REMARK 500 9 HIS A 24 57.60 179.39 REMARK 500 9 HIS A 74 32.03 -150.90 REMARK 500 9 LEU A 75 82.76 -50.27 REMARK 500 9 THR A 81 -74.15 -69.55 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5687 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENT OF S-824 DBREF 1P68 A 1 102 PDB 1P68 1P68 1 102 SEQRES 1 A 102 MET TYR GLY LYS LEU ASN ASP LEU LEU GLU ASP LEU GLN SEQRES 2 A 102 GLU VAL LEU LYS ASN LEU HIS LYS ASN TRP HIS GLY GLY SEQRES 3 A 102 LYS ASP ASN LEU HIS ASP VAL ASP ASN HIS LEU GLN ASN SEQRES 4 A 102 VAL ILE GLU ASP ILE HIS ASP PHE MET GLN GLY GLY GLY SEQRES 5 A 102 SER GLY GLY LYS LEU GLN GLU MET MET LYS GLU PHE GLN SEQRES 6 A 102 GLN VAL LEU ASP GLU LEU ASN ASN HIS LEU GLN GLY GLY SEQRES 7 A 102 LYS HIS THR VAL HIS HIS ILE GLU GLN ASN ILE LYS GLU SEQRES 8 A 102 ILE PHE HIS HIS LEU GLU GLU LEU VAL HIS ARG HELIX 1 1 LYS A 4 LYS A 21 1 18 HELIX 2 2 LEU A 30 ASP A 46 1 17 HELIX 3 3 GLY A 55 MET A 60 1 6 HELIX 4 4 MET A 60 ASN A 73 1 14 HELIX 5 5 GLY A 78 LYS A 90 1 13 HELIX 6 6 GLU A 91 HIS A 101 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1