data_1P6V # _entry.id 1P6V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P6V pdb_00001p6v 10.2210/pdb1p6v/pdb NDB PR0098 ? ? RCSB RCSB019081 ? ? WWPDB D_1000019081 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-12 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P6V _pdbx_database_status.recvd_initial_deposition_date 2003-04-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gutmann, S.' 1 'Haebel, P.W.' 2 'Metzinger, L.' 3 'Sutter, M.' 4 'Felden, B.' 5 'Ban, N.' 6 # _citation.id primary _citation.title 'Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB' _citation.journal_abbrev Nature _citation.journal_volume 424 _citation.page_first 699 _citation.page_last 703 _citation.year 2003 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12904796 _citation.pdbx_database_id_DOI 10.1038/nature01831 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gutmann, S.' 1 ? primary 'Haebel, P.W.' 2 ? primary 'Metzinger, L.' 3 ? primary 'Sutter, M.' 4 ? primary 'Felden, B.' 5 ? primary 'Ban, N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 45-MER 21959.070 2 ? ? ? ? 2 polymer man 'SsrA-binding protein' 18440.818 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA B,D ? 2 'polypeptide(L)' no no ;GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL ; ;GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL ; A,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 G n 1 6 C n 1 7 G n 1 8 G n 1 9 A n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 A n 1 15 U n 1 16 U n 1 17 C n 1 18 G n 1 19 A n 1 20 C n 1 21 G n 1 22 G n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 U n 1 28 U n 1 29 C n 1 30 G n 1 31 G n 1 32 U n 1 33 C n 1 34 C n 1 35 U n 1 36 C n 1 37 G n 1 38 G n 1 39 A n 1 40 C n 1 41 G n 1 42 C n 1 43 G n 1 44 G n 1 45 G n 1 46 U n 1 47 U n 1 48 C n 1 49 G n 1 50 A n 1 51 U n 1 52 U n 1 53 C n 1 54 C n 1 55 C n 1 56 G n 1 57 C n 1 58 C n 1 59 G n 1 60 C n 1 61 C n 1 62 U n 1 63 C n 1 64 C n 1 65 A n 1 66 C n 1 67 C n 1 68 A n 2 1 GLY n 2 2 LYS n 2 3 SER n 2 4 ASP n 2 5 LYS n 2 6 ILE n 2 7 ILE n 2 8 PRO n 2 9 ILE n 2 10 ALA n 2 11 GLU n 2 12 ASN n 2 13 LYS n 2 14 GLU n 2 15 ALA n 2 16 LYS n 2 17 ALA n 2 18 LYS n 2 19 TYR n 2 20 ASP n 2 21 ILE n 2 22 LEU n 2 23 GLU n 2 24 THR n 2 25 TYR n 2 26 GLU n 2 27 ALA n 2 28 GLY n 2 29 ILE n 2 30 VAL n 2 31 LEU n 2 32 LYS n 2 33 GLY n 2 34 SER n 2 35 GLU n 2 36 VAL n 2 37 LYS n 2 38 SER n 2 39 LEU n 2 40 ARG n 2 41 GLU n 2 42 LYS n 2 43 GLY n 2 44 THR n 2 45 VAL n 2 46 SER n 2 47 PHE n 2 48 LYS n 2 49 ASP n 2 50 SER n 2 51 PHE n 2 52 VAL n 2 53 ARG n 2 54 ILE n 2 55 GLU n 2 56 ASN n 2 57 GLY n 2 58 GLU n 2 59 ALA n 2 60 TRP n 2 61 LEU n 2 62 TYR n 2 63 ASN n 2 64 LEU n 2 65 TYR n 2 66 ILE n 2 67 ALA n 2 68 PRO n 2 69 TYR n 2 70 LYS n 2 71 HIS n 2 72 ALA n 2 73 THR n 2 74 ILE n 2 75 GLU n 2 76 ASN n 2 77 HIS n 2 78 ASP n 2 79 PRO n 2 80 LEU n 2 81 ARG n 2 82 LYS n 2 83 ARG n 2 84 LYS n 2 85 LEU n 2 86 LEU n 2 87 LEU n 2 88 HIS n 2 89 LYS n 2 90 ARG n 2 91 GLU n 2 92 ILE n 2 93 MET n 2 94 ARG n 2 95 LEU n 2 96 TYR n 2 97 GLY n 2 98 LYS n 2 99 VAL n 2 100 GLN n 2 101 GLU n 2 102 LYS n 2 103 GLY n 2 104 TYR n 2 105 THR n 2 106 ILE n 2 107 ILE n 2 108 PRO n 2 109 LEU n 2 110 LYS n 2 111 LEU n 2 112 TYR n 2 113 TRP n 2 114 LYS n 2 115 ASN n 2 116 ASN n 2 117 LYS n 2 118 VAL n 2 119 LYS n 2 120 VAL n 2 121 LEU n 2 122 ILE n 2 123 ALA n 2 124 LEU n 2 125 ALA n 2 126 LYS n 2 127 GLY n 2 128 LYS n 2 129 LYS n 2 130 LEU n 2 131 TYR n 2 132 ASP n 2 133 ARG n 2 134 ARG n 2 135 ARG n 2 136 GLU n 2 137 LEU n 2 138 LYS n 2 139 GLU n 2 140 LYS n 2 141 ALA n 2 142 MET n 2 143 LYS n 2 144 ARG n 2 145 GLU n 2 146 LEU n 2 147 GLU n 2 148 ARG n 2 149 GLU n 2 150 PHE n 2 151 LYS n 2 152 GLY n 2 153 LYS n 2 154 ILE n 2 155 HIS n 2 156 LEU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aquifex _entity_src_gen.pdbx_gene_src_gene SMPB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63363 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcription of Aquifex aeolicus tmRNA[delta]' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 ? ? ? B . n A 1 2 G 2 2 ? ? ? B . n A 1 3 G 3 3 ? ? ? B . n A 1 4 G 4 4 ? ? ? B . n A 1 5 G 5 5 ? ? ? B . n A 1 6 C 6 6 ? ? ? B . n A 1 7 G 7 7 ? ? ? B . n A 1 8 G 8 8 ? ? ? B . n A 1 9 A 9 9 ? ? ? B . n A 1 10 A 10 10 ? ? ? B . n A 1 11 A 11 11 ? ? ? B . n A 1 12 G 12 12 ? ? ? B . n A 1 13 G 13 13 13 G G B . n A 1 14 A 14 14 14 A A B . n A 1 15 U 15 15 15 U U B . n A 1 16 U 16 16 16 U U B . n A 1 17 C 17 17 17 C C B . n A 1 18 G 18 18 18 G G B . n A 1 19 A 19 19 19 A A B . n A 1 20 C 20 20 20 C C B . n A 1 21 G 21 21 21 G G B . n A 1 22 G 22 22 22 G G B . n A 1 23 G 23 23 23 G G B . n A 1 24 G 24 24 24 G G B . n A 1 25 A 25 25 25 A A B . n A 1 26 C 26 26 26 C C B . n A 1 27 U 27 27 27 U U B . n A 1 28 U 28 28 28 U U B . n A 1 29 C 29 29 29 C C B . n A 1 30 G 30 30 30 G G B . n A 1 31 G 31 31 31 G G B . n A 1 32 U 32 32 32 U U B . n A 1 33 C 33 33 33 C C B . n A 1 34 C 34 34 34 C C B . n A 1 35 U 35 35 35 U U B . n A 1 36 C 36 36 36 C C B . n A 1 37 G 37 37 37 G G B . n A 1 38 G 38 38 38 G G B . n A 1 39 A 39 39 39 A A B . n A 1 40 C 40 40 40 C C B . n A 1 41 G 41 41 41 G G B . n A 1 42 C 42 42 42 C C B . n A 1 43 G 43 43 43 G G B . n A 1 44 G 44 44 44 G G B . n A 1 45 G 45 45 45 G G B . n A 1 46 U 46 46 46 U U B . n A 1 47 U 47 47 47 U U B . n A 1 48 C 48 48 48 C C B . n A 1 49 G 49 49 49 G G B . n A 1 50 A 50 50 50 A A B . n A 1 51 U 51 51 51 U U B . n A 1 52 U 52 52 52 U U B . n A 1 53 C 53 53 53 C C B . n A 1 54 C 54 54 54 C C B . n A 1 55 C 55 55 55 C C B . n A 1 56 G 56 56 56 G G B . n A 1 57 C 57 57 57 C C B . n A 1 58 C 58 58 ? ? ? B . n A 1 59 G 59 59 ? ? ? B . n A 1 60 C 60 60 ? ? ? B . n A 1 61 C 61 61 ? ? ? B . n A 1 62 U 62 62 ? ? ? B . n A 1 63 C 63 63 ? ? ? B . n A 1 64 C 64 64 ? ? ? B . n A 1 65 A 65 65 ? ? ? B . n A 1 66 C 66 66 ? ? ? B . n A 1 67 C 67 67 ? ? ? B . n A 1 68 A 68 68 ? ? ? B . n B 1 1 G 1 1 ? ? ? D . n B 1 2 G 2 2 ? ? ? D . n B 1 3 G 3 3 ? ? ? D . n B 1 4 G 4 4 ? ? ? D . n B 1 5 G 5 5 ? ? ? D . n B 1 6 C 6 6 ? ? ? D . n B 1 7 G 7 7 ? ? ? D . n B 1 8 G 8 8 ? ? ? D . n B 1 9 A 9 9 ? ? ? D . n B 1 10 A 10 10 ? ? ? D . n B 1 11 A 11 11 ? ? ? D . n B 1 12 G 12 12 ? ? ? D . n B 1 13 G 13 13 ? ? ? D . n B 1 14 A 14 14 ? ? ? D . n B 1 15 U 15 15 ? ? ? D . n B 1 16 U 16 16 16 U U D . n B 1 17 C 17 17 17 C C D . n B 1 18 G 18 18 18 G G D . n B 1 19 A 19 19 19 A A D . n B 1 20 C 20 20 20 C C D . n B 1 21 G 21 21 21 G G D . n B 1 22 G 22 22 22 G G D . n B 1 23 G 23 23 23 G G D . n B 1 24 G 24 24 24 G G D . n B 1 25 A 25 25 25 A A D . n B 1 26 C 26 26 26 C C D . n B 1 27 U 27 27 27 U U D . n B 1 28 U 28 28 28 U U D . n B 1 29 C 29 29 29 C C D . n B 1 30 G 30 30 30 G G D . n B 1 31 G 31 31 31 G G D . n B 1 32 U 32 32 32 U U D . n B 1 33 C 33 33 33 C C D . n B 1 34 C 34 34 34 C C D . n B 1 35 U 35 35 35 U U D . n B 1 36 C 36 36 36 C C D . n B 1 37 G 37 37 37 G G D . n B 1 38 G 38 38 38 G G D . n B 1 39 A 39 39 39 A A D . n B 1 40 C 40 40 ? ? ? D . n B 1 41 G 41 41 ? ? ? D . n B 1 42 C 42 42 ? ? ? D . n B 1 43 G 43 43 ? ? ? D . n B 1 44 G 44 44 ? ? ? D . n B 1 45 G 45 45 ? ? ? D . n B 1 46 U 46 46 ? ? ? D . n B 1 47 U 47 47 ? ? ? D . n B 1 48 C 48 48 ? ? ? D . n B 1 49 G 49 49 ? ? ? D . n B 1 50 A 50 50 ? ? ? D . n B 1 51 U 51 51 ? ? ? D . n B 1 52 U 52 52 ? ? ? D . n B 1 53 C 53 53 ? ? ? D . n B 1 54 C 54 54 ? ? ? D . n B 1 55 C 55 55 ? ? ? D . n B 1 56 G 56 56 ? ? ? D . n B 1 57 C 57 57 ? ? ? D . n B 1 58 C 58 58 ? ? ? D . n B 1 59 G 59 59 ? ? ? D . n B 1 60 C 60 60 ? ? ? D . n B 1 61 C 61 61 ? ? ? D . n B 1 62 U 62 62 ? ? ? D . n B 1 63 C 63 63 ? ? ? D . n B 1 64 C 64 64 ? ? ? D . n B 1 65 A 65 65 ? ? ? D . n B 1 66 C 66 66 ? ? ? D . n B 1 67 C 67 67 ? ? ? D . n B 1 68 A 68 68 ? ? ? D . n C 2 1 GLY 1 1 ? ? ? A . n C 2 2 LYS 2 2 ? ? ? A . n C 2 3 SER 3 3 3 SER SER A . n C 2 4 ASP 4 4 4 ASP ASP A . n C 2 5 LYS 5 5 5 LYS LYS A . n C 2 6 ILE 6 6 6 ILE ILE A . n C 2 7 ILE 7 7 7 ILE ILE A . n C 2 8 PRO 8 8 8 PRO PRO A . n C 2 9 ILE 9 9 9 ILE ILE A . n C 2 10 ALA 10 10 10 ALA ALA A . n C 2 11 GLU 11 11 11 GLU GLU A . n C 2 12 ASN 12 12 12 ASN ASN A . n C 2 13 LYS 13 13 13 LYS LYS A . n C 2 14 GLU 14 14 14 GLU GLU A . n C 2 15 ALA 15 15 15 ALA ALA A . n C 2 16 LYS 16 16 16 LYS LYS A . n C 2 17 ALA 17 17 17 ALA ALA A . n C 2 18 LYS 18 18 18 LYS LYS A . n C 2 19 TYR 19 19 19 TYR TYR A . n C 2 20 ASP 20 20 20 ASP ASP A . n C 2 21 ILE 21 21 21 ILE ILE A . n C 2 22 LEU 22 22 22 LEU LEU A . n C 2 23 GLU 23 23 23 GLU GLU A . n C 2 24 THR 24 24 24 THR THR A . n C 2 25 TYR 25 25 25 TYR TYR A . n C 2 26 GLU 26 26 26 GLU GLU A . n C 2 27 ALA 27 27 27 ALA ALA A . n C 2 28 GLY 28 28 28 GLY GLY A . n C 2 29 ILE 29 29 29 ILE ILE A . n C 2 30 VAL 30 30 30 VAL VAL A . n C 2 31 LEU 31 31 31 LEU LEU A . n C 2 32 LYS 32 32 32 LYS LYS A . n C 2 33 GLY 33 33 33 GLY GLY A . n C 2 34 SER 34 34 34 SER SER A . n C 2 35 GLU 35 35 35 GLU GLU A . n C 2 36 VAL 36 36 36 VAL VAL A . n C 2 37 LYS 37 37 37 LYS LYS A . n C 2 38 SER 38 38 38 SER SER A . n C 2 39 LEU 39 39 39 LEU LEU A . n C 2 40 ARG 40 40 40 ARG ARG A . n C 2 41 GLU 41 41 41 GLU GLU A . n C 2 42 LYS 42 42 42 LYS LYS A . n C 2 43 GLY 43 43 43 GLY GLY A . n C 2 44 THR 44 44 44 THR THR A . n C 2 45 VAL 45 45 45 VAL VAL A . n C 2 46 SER 46 46 46 SER SER A . n C 2 47 PHE 47 47 47 PHE PHE A . n C 2 48 LYS 48 48 48 LYS LYS A . n C 2 49 ASP 49 49 49 ASP ASP A . n C 2 50 SER 50 50 50 SER SER A . n C 2 51 PHE 51 51 51 PHE PHE A . n C 2 52 VAL 52 52 52 VAL VAL A . n C 2 53 ARG 53 53 53 ARG ARG A . n C 2 54 ILE 54 54 54 ILE ILE A . n C 2 55 GLU 55 55 55 GLU GLU A . n C 2 56 ASN 56 56 56 ASN ASN A . n C 2 57 GLY 57 57 57 GLY GLY A . n C 2 58 GLU 58 58 58 GLU GLU A . n C 2 59 ALA 59 59 59 ALA ALA A . n C 2 60 TRP 60 60 60 TRP TRP A . n C 2 61 LEU 61 61 61 LEU LEU A . n C 2 62 TYR 62 62 62 TYR TYR A . n C 2 63 ASN 63 63 63 ASN ASN A . n C 2 64 LEU 64 64 64 LEU LEU A . n C 2 65 TYR 65 65 65 TYR TYR A . n C 2 66 ILE 66 66 66 ILE ILE A . n C 2 67 ALA 67 67 67 ALA ALA A . n C 2 68 PRO 68 68 68 PRO PRO A . n C 2 69 TYR 69 69 69 TYR TYR A . n C 2 70 LYS 70 70 70 LYS LYS A . n C 2 71 HIS 71 71 71 HIS HIS A . n C 2 72 ALA 72 72 72 ALA ALA A . n C 2 73 THR 73 73 ? ? ? A . n C 2 74 ILE 74 74 ? ? ? A . n C 2 75 GLU 75 75 ? ? ? A . n C 2 76 ASN 76 76 76 ASN ASN A . n C 2 77 HIS 77 77 77 HIS HIS A . n C 2 78 ASP 78 78 78 ASP ASP A . n C 2 79 PRO 79 79 79 PRO PRO A . n C 2 80 LEU 80 80 80 LEU LEU A . n C 2 81 ARG 81 81 81 ARG ARG A . n C 2 82 LYS 82 82 82 LYS LYS A . n C 2 83 ARG 83 83 83 ARG ARG A . n C 2 84 LYS 84 84 84 LYS LYS A . n C 2 85 LEU 85 85 85 LEU LEU A . n C 2 86 LEU 86 86 86 LEU LEU A . n C 2 87 LEU 87 87 87 LEU LEU A . n C 2 88 HIS 88 88 88 HIS HIS A . n C 2 89 LYS 89 89 89 LYS LYS A . n C 2 90 ARG 90 90 90 ARG ARG A . n C 2 91 GLU 91 91 91 GLU GLU A . n C 2 92 ILE 92 92 92 ILE ILE A . n C 2 93 MET 93 93 93 MET MET A . n C 2 94 ARG 94 94 94 ARG ARG A . n C 2 95 LEU 95 95 95 LEU LEU A . n C 2 96 TYR 96 96 96 TYR TYR A . n C 2 97 GLY 97 97 97 GLY GLY A . n C 2 98 LYS 98 98 98 LYS LYS A . n C 2 99 VAL 99 99 99 VAL VAL A . n C 2 100 GLN 100 100 100 GLN GLN A . n C 2 101 GLU 101 101 101 GLU GLU A . n C 2 102 LYS 102 102 102 LYS LYS A . n C 2 103 GLY 103 103 103 GLY GLY A . n C 2 104 TYR 104 104 104 TYR TYR A . n C 2 105 THR 105 105 105 THR THR A . n C 2 106 ILE 106 106 106 ILE ILE A . n C 2 107 ILE 107 107 107 ILE ILE A . n C 2 108 PRO 108 108 108 PRO PRO A . n C 2 109 LEU 109 109 109 LEU LEU A . n C 2 110 LYS 110 110 110 LYS LYS A . n C 2 111 LEU 111 111 111 LEU LEU A . n C 2 112 TYR 112 112 112 TYR TYR A . n C 2 113 TRP 113 113 113 TRP TRP A . n C 2 114 LYS 114 114 114 LYS LYS A . n C 2 115 ASN 115 115 115 ASN ASN A . n C 2 116 ASN 116 116 116 ASN ASN A . n C 2 117 LYS 117 117 117 LYS LYS A . n C 2 118 VAL 118 118 118 VAL VAL A . n C 2 119 LYS 119 119 119 LYS LYS A . n C 2 120 VAL 120 120 120 VAL VAL A . n C 2 121 LEU 121 121 121 LEU LEU A . n C 2 122 ILE 122 122 122 ILE ILE A . n C 2 123 ALA 123 123 123 ALA ALA A . n C 2 124 LEU 124 124 124 LEU LEU A . n C 2 125 ALA 125 125 125 ALA ALA A . n C 2 126 LYS 126 126 126 LYS LYS A . n C 2 127 GLY 127 127 127 GLY GLY A . n C 2 128 LYS 128 128 128 LYS LYS A . n C 2 129 LYS 129 129 129 LYS LYS A . n C 2 130 LEU 130 130 130 LEU LEU A . n C 2 131 TYR 131 131 ? ? ? A . n C 2 132 ASP 132 132 ? ? ? A . n C 2 133 ARG 133 133 ? ? ? A . n C 2 134 ARG 134 134 ? ? ? A . n C 2 135 ARG 135 135 ? ? ? A . n C 2 136 GLU 136 136 ? ? ? A . n C 2 137 LEU 137 137 ? ? ? A . n C 2 138 LYS 138 138 ? ? ? A . n C 2 139 GLU 139 139 ? ? ? A . n C 2 140 LYS 140 140 ? ? ? A . n C 2 141 ALA 141 141 ? ? ? A . n C 2 142 MET 142 142 ? ? ? A . n C 2 143 LYS 143 143 ? ? ? A . n C 2 144 ARG 144 144 ? ? ? A . n C 2 145 GLU 145 145 ? ? ? A . n C 2 146 LEU 146 146 ? ? ? A . n C 2 147 GLU 147 147 ? ? ? A . n C 2 148 ARG 148 148 ? ? ? A . n C 2 149 GLU 149 149 ? ? ? A . n C 2 150 PHE 150 150 ? ? ? A . n C 2 151 LYS 151 151 ? ? ? A . n C 2 152 GLY 152 152 ? ? ? A . n C 2 153 LYS 153 153 ? ? ? A . n C 2 154 ILE 154 154 ? ? ? A . n C 2 155 HIS 155 155 ? ? ? A . n C 2 156 LEU 156 156 ? ? ? A . n D 2 1 GLY 1 1 ? ? ? C . n D 2 2 LYS 2 2 ? ? ? C . n D 2 3 SER 3 3 3 SER SER C . n D 2 4 ASP 4 4 4 ASP ASP C . n D 2 5 LYS 5 5 5 LYS LYS C . n D 2 6 ILE 6 6 6 ILE ILE C . n D 2 7 ILE 7 7 7 ILE ILE C . n D 2 8 PRO 8 8 8 PRO PRO C . n D 2 9 ILE 9 9 9 ILE ILE C . n D 2 10 ALA 10 10 10 ALA ALA C . n D 2 11 GLU 11 11 11 GLU GLU C . n D 2 12 ASN 12 12 12 ASN ASN C . n D 2 13 LYS 13 13 13 LYS LYS C . n D 2 14 GLU 14 14 14 GLU GLU C . n D 2 15 ALA 15 15 15 ALA ALA C . n D 2 16 LYS 16 16 16 LYS LYS C . n D 2 17 ALA 17 17 17 ALA ALA C . n D 2 18 LYS 18 18 18 LYS LYS C . n D 2 19 TYR 19 19 19 TYR TYR C . n D 2 20 ASP 20 20 20 ASP ASP C . n D 2 21 ILE 21 21 21 ILE ILE C . n D 2 22 LEU 22 22 22 LEU LEU C . n D 2 23 GLU 23 23 23 GLU GLU C . n D 2 24 THR 24 24 24 THR THR C . n D 2 25 TYR 25 25 25 TYR TYR C . n D 2 26 GLU 26 26 26 GLU GLU C . n D 2 27 ALA 27 27 27 ALA ALA C . n D 2 28 GLY 28 28 28 GLY GLY C . n D 2 29 ILE 29 29 29 ILE ILE C . n D 2 30 VAL 30 30 30 VAL VAL C . n D 2 31 LEU 31 31 31 LEU LEU C . n D 2 32 LYS 32 32 32 LYS LYS C . n D 2 33 GLY 33 33 33 GLY GLY C . n D 2 34 SER 34 34 34 SER SER C . n D 2 35 GLU 35 35 35 GLU GLU C . n D 2 36 VAL 36 36 36 VAL VAL C . n D 2 37 LYS 37 37 37 LYS LYS C . n D 2 38 SER 38 38 38 SER SER C . n D 2 39 LEU 39 39 39 LEU LEU C . n D 2 40 ARG 40 40 40 ARG ARG C . n D 2 41 GLU 41 41 41 GLU GLU C . n D 2 42 LYS 42 42 42 LYS LYS C . n D 2 43 GLY 43 43 43 GLY GLY C . n D 2 44 THR 44 44 44 THR THR C . n D 2 45 VAL 45 45 45 VAL VAL C . n D 2 46 SER 46 46 46 SER SER C . n D 2 47 PHE 47 47 47 PHE PHE C . n D 2 48 LYS 48 48 48 LYS LYS C . n D 2 49 ASP 49 49 49 ASP ASP C . n D 2 50 SER 50 50 50 SER SER C . n D 2 51 PHE 51 51 51 PHE PHE C . n D 2 52 VAL 52 52 52 VAL VAL C . n D 2 53 ARG 53 53 53 ARG ARG C . n D 2 54 ILE 54 54 54 ILE ILE C . n D 2 55 GLU 55 55 55 GLU GLU C . n D 2 56 ASN 56 56 56 ASN ASN C . n D 2 57 GLY 57 57 57 GLY GLY C . n D 2 58 GLU 58 58 58 GLU GLU C . n D 2 59 ALA 59 59 59 ALA ALA C . n D 2 60 TRP 60 60 60 TRP TRP C . n D 2 61 LEU 61 61 61 LEU LEU C . n D 2 62 TYR 62 62 62 TYR TYR C . n D 2 63 ASN 63 63 63 ASN ASN C . n D 2 64 LEU 64 64 64 LEU LEU C . n D 2 65 TYR 65 65 65 TYR TYR C . n D 2 66 ILE 66 66 66 ILE ILE C . n D 2 67 ALA 67 67 67 ALA ALA C . n D 2 68 PRO 68 68 68 PRO PRO C . n D 2 69 TYR 69 69 69 TYR TYR C . n D 2 70 LYS 70 70 70 LYS LYS C . n D 2 71 HIS 71 71 71 HIS HIS C . n D 2 72 ALA 72 72 72 ALA ALA C . n D 2 73 THR 73 73 ? ? ? C . n D 2 74 ILE 74 74 ? ? ? C . n D 2 75 GLU 75 75 ? ? ? C . n D 2 76 ASN 76 76 76 ASN ASN C . n D 2 77 HIS 77 77 77 HIS HIS C . n D 2 78 ASP 78 78 78 ASP ASP C . n D 2 79 PRO 79 79 79 PRO PRO C . n D 2 80 LEU 80 80 80 LEU LEU C . n D 2 81 ARG 81 81 81 ARG ARG C . n D 2 82 LYS 82 82 82 LYS LYS C . n D 2 83 ARG 83 83 83 ARG ARG C . n D 2 84 LYS 84 84 84 LYS LYS C . n D 2 85 LEU 85 85 85 LEU LEU C . n D 2 86 LEU 86 86 86 LEU LEU C . n D 2 87 LEU 87 87 87 LEU LEU C . n D 2 88 HIS 88 88 88 HIS HIS C . n D 2 89 LYS 89 89 89 LYS LYS C . n D 2 90 ARG 90 90 90 ARG ARG C . n D 2 91 GLU 91 91 91 GLU GLU C . n D 2 92 ILE 92 92 92 ILE ILE C . n D 2 93 MET 93 93 93 MET MET C . n D 2 94 ARG 94 94 94 ARG ARG C . n D 2 95 LEU 95 95 95 LEU LEU C . n D 2 96 TYR 96 96 96 TYR TYR C . n D 2 97 GLY 97 97 97 GLY GLY C . n D 2 98 LYS 98 98 98 LYS LYS C . n D 2 99 VAL 99 99 99 VAL VAL C . n D 2 100 GLN 100 100 100 GLN GLN C . n D 2 101 GLU 101 101 101 GLU GLU C . n D 2 102 LYS 102 102 102 LYS LYS C . n D 2 103 GLY 103 103 103 GLY GLY C . n D 2 104 TYR 104 104 104 TYR TYR C . n D 2 105 THR 105 105 105 THR THR C . n D 2 106 ILE 106 106 106 ILE ILE C . n D 2 107 ILE 107 107 107 ILE ILE C . n D 2 108 PRO 108 108 108 PRO PRO C . n D 2 109 LEU 109 109 109 LEU LEU C . n D 2 110 LYS 110 110 110 LYS LYS C . n D 2 111 LEU 111 111 111 LEU LEU C . n D 2 112 TYR 112 112 112 TYR TYR C . n D 2 113 TRP 113 113 113 TRP TRP C . n D 2 114 LYS 114 114 114 LYS LYS C . n D 2 115 ASN 115 115 115 ASN ASN C . n D 2 116 ASN 116 116 116 ASN ASN C . n D 2 117 LYS 117 117 117 LYS LYS C . n D 2 118 VAL 118 118 118 VAL VAL C . n D 2 119 LYS 119 119 119 LYS LYS C . n D 2 120 VAL 120 120 120 VAL VAL C . n D 2 121 LEU 121 121 121 LEU LEU C . n D 2 122 ILE 122 122 122 ILE ILE C . n D 2 123 ALA 123 123 123 ALA ALA C . n D 2 124 LEU 124 124 124 LEU LEU C . n D 2 125 ALA 125 125 125 ALA ALA C . n D 2 126 LYS 126 126 126 LYS LYS C . n D 2 127 GLY 127 127 127 GLY GLY C . n D 2 128 LYS 128 128 128 LYS LYS C . n D 2 129 LYS 129 129 129 LYS LYS C . n D 2 130 LEU 130 130 130 LEU LEU C . n D 2 131 TYR 131 131 ? ? ? C . n D 2 132 ASP 132 132 ? ? ? C . n D 2 133 ARG 133 133 ? ? ? C . n D 2 134 ARG 134 134 ? ? ? C . n D 2 135 ARG 135 135 ? ? ? C . n D 2 136 GLU 136 136 ? ? ? C . n D 2 137 LEU 137 137 ? ? ? C . n D 2 138 LYS 138 138 ? ? ? C . n D 2 139 GLU 139 139 ? ? ? C . n D 2 140 LYS 140 140 ? ? ? C . n D 2 141 ALA 141 141 ? ? ? C . n D 2 142 MET 142 142 ? ? ? C . n D 2 143 LYS 143 143 ? ? ? C . n D 2 144 ARG 144 144 ? ? ? C . n D 2 145 GLU 145 145 ? ? ? C . n D 2 146 LEU 146 146 ? ? ? C . n D 2 147 GLU 147 147 ? ? ? C . n D 2 148 ARG 148 148 ? ? ? C . n D 2 149 GLU 149 149 ? ? ? C . n D 2 150 PHE 150 150 ? ? ? C . n D 2 151 LYS 151 151 ? ? ? C . n D 2 152 GLY 152 152 ? ? ? C . n D 2 153 LYS 153 153 ? ? ? C . n D 2 154 ILE 154 154 ? ? ? C . n D 2 155 HIS 155 155 ? ? ? C . n D 2 156 LEU 156 156 ? ? ? C . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B G 13 ? P ? A G 13 P 2 1 Y 1 B G 13 ? OP1 ? A G 13 OP1 3 1 Y 1 B G 13 ? OP2 ? A G 13 OP2 4 1 Y 1 D U 16 ? P ? B U 16 P 5 1 Y 1 D U 16 ? OP1 ? B U 16 OP1 6 1 Y 1 D U 16 ? OP2 ? B U 16 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1P6V _cell.length_a 99.680 _cell.length_b 99.680 _cell.length_c 207.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P6V _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1P6V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.22 _exptl_crystal.density_percent_sol 76.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details ;Isopropanol, cacodylate, ammonium acetate, magnesium acetate, calcium acetate, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Isopropanol ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 'ammonium acetate' ? ? ? 1 4 1 'magnesium acetate' ? ? ? 1 5 1 'calcium acetate' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 cacodylate ? ? ? 1 8 2 'magnesium acetate' ? ? ? 1 9 2 'calcium acetate' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.008 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.008 # _reflns.entry_id 1P6V _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.2 _reflns.number_obs 17756 _reflns.number_all 17756 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 23.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.3 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.87 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1P6V _refine.ls_number_reflns_obs 16854 _refine.ls_number_reflns_all 18501 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.94 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 94.4 _refine.ls_R_factor_obs 0.302 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.302 _refine.ls_R_factor_R_free 0.36 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1647 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 108.4 _refine.aniso_B[1][1] 15.09 _refine.aniso_B[2][2] 15.09 _refine.aniso_B[3][3] -30.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.224974 _refine.solvent_model_param_bsol 90.774 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model 'GROUPED B-Factors' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1P6V _refine_analyze.Luzzati_coordinate_error_obs 0.54 _refine_analyze.Luzzati_sigma_a_obs 0.66 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.71 _refine_analyze.Luzzati_sigma_a_free 0.71 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2054 _refine_hist.pdbx_number_atoms_nucleic_acid 1465 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3519 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 19.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.36 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.40 _refine_ls_shell.number_reflns_R_work 2332 _refine_ls_shell.R_factor_R_work 0.413 _refine_ls_shell.percent_reflns_obs 87.9 _refine_ls_shell.R_factor_R_free 0.46 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free 8.3 _refine_ls_shell.number_reflns_R_free 212 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ? WATER.TOP 'X-RAY DIFFRACTION' 4 ? ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1P6V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1P6V _struct.title 'Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P6V _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'SmpB, tmRNA, trans-translation, protein-RNA complex, RNA BINDING PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP SSRP_AQUAE O66640 2 2 ? ? 2 PDB 1P6V 1P6V 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1P6V A 1 ? 156 ? O66640 2 ? 157 ? 1 156 2 1 1P6V C 1 ? 156 ? O66640 2 ? 157 ? 1 156 3 2 1P6V B 1 ? 68 ? 1P6V 1 ? 68 ? 1 68 4 2 1P6V D 1 ? 68 ? 1P6V 1 ? 68 ? 1 68 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'SmpB (chain A) and tmRNA[delta] (chain B) for the ribonucleoprotein complex' ? 2 'SmpB (chain C) and tmRNA[delta] (chain D) for the ribonucleoprotein complex; poorer defined in electron density' ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS C 32 ? GLU C 41 ? LYS A 32 GLU A 41 1 ? 10 HELX_P HELX_P2 2 HIS C 88 ? GLY C 103 ? HIS A 88 GLY A 103 1 ? 16 HELX_P HELX_P3 3 ASN D 12 ? ALA D 17 ? ASN C 12 ALA C 17 1 ? 6 HELX_P HELX_P4 4 LYS D 32 ? LYS D 42 ? LYS C 32 LYS C 42 1 ? 11 HELX_P HELX_P5 5 HIS D 88 ? LYS D 102 ? HIS C 88 LYS C 102 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 19 N1 ? ? ? 1_555 A G 38 N2 ? ? B A 19 B G 38 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 37 N1 ? ? B C 20 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 37 O6 ? ? B C 20 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 20 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 38 N2 ? ? B C 20 B G 38 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog6 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 22 N1 ? ? ? 1_555 A U 35 O2 ? ? B G 22 B U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 22 O6 ? ? ? 1_555 A U 35 N3 ? ? B G 22 B U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 34 N3 ? ? B G 23 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 34 O2 ? ? B G 23 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 34 N4 ? ? B G 23 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 24 B C 33 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog15 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 32 N3 ? ? B A 25 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 32 O4 ? ? B A 25 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 26 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 26 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 26 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 41 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 41 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 41 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 56 O6 ? ? B C 42 B G 56 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog24 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 55 N3 ? ? B G 43 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 55 O2 ? ? B G 43 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 55 N4 ? ? B G 43 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 54 N3 ? ? B G 44 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 54 O2 ? ? B G 44 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 54 N4 ? ? B G 44 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 53 N3 ? ? B G 45 B C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog31 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 50 N1 ? ? B U 46 B A 50 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog32 hydrog ? ? A A 50 N6 ? ? ? 1_555 A C 53 O2 ? ? B A 50 B C 53 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog33 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 38 N3 ? ? D A 19 D G 38 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog34 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 37 N1 ? ? D C 20 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 37 O6 ? ? D C 20 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 37 N2 ? ? D C 20 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 38 N2 ? ? D C 20 D G 38 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog38 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 36 N3 ? ? D G 21 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 36 O2 ? ? D G 21 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 36 N4 ? ? D G 21 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 22 N1 ? ? ? 1_555 B U 35 O2 ? ? D G 22 D U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? B G 22 O6 ? ? ? 1_555 B U 35 N3 ? ? D G 22 D U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog43 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 34 N3 ? ? D G 23 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 34 O2 ? ? D G 23 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 34 N4 ? ? D G 23 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 33 N3 ? ? D G 24 D C 33 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog47 hydrog ? ? B A 25 N1 ? ? ? 1_555 B U 32 N3 ? ? D A 25 D U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B A 25 N6 ? ? ? 1_555 B U 32 O4 ? ? D A 25 D U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 26 N3 ? ? ? 1_555 B G 31 N1 ? ? D C 26 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 26 N4 ? ? ? 1_555 B G 31 O6 ? ? D C 26 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 26 O2 ? ? ? 1_555 B G 31 N2 ? ? D C 26 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 4 ? E ? 2 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 6 ? GLU C 11 ? ILE A 6 GLU A 11 A 2 THR C 105 ? LYS C 114 ? THR A 105 LYS A 114 A 3 VAL C 118 ? ALA C 125 ? VAL A 118 ALA A 125 A 4 ILE C 21 ? GLU C 26 ? ILE A 21 GLU A 26 B 1 VAL C 45 ? SER C 46 ? VAL A 45 SER A 46 B 2 TYR C 65 ? ILE C 66 ? TYR A 65 ILE A 66 C 1 VAL C 52 ? ARG C 53 ? VAL A 52 ARG A 53 C 2 TRP C 60 ? LEU C 61 ? TRP A 60 LEU A 61 C 3 ARG C 83 ? LYS C 84 ? ARG A 83 LYS A 84 D 1 ILE D 6 ? PRO D 8 ? ILE C 6 PRO C 8 D 2 PRO D 108 ? LYS D 114 ? PRO C 108 LYS C 114 D 3 VAL D 118 ? ALA D 123 ? VAL C 118 ALA C 123 D 4 THR D 24 ? GLU D 26 ? THR C 24 GLU C 26 E 1 TYR D 19 ? ASP D 20 ? TYR C 19 ASP C 20 E 2 LYS D 126 ? GLY D 127 ? LYS C 126 GLY C 127 F 1 PHE D 51 ? ILE D 54 ? PHE C 51 ILE C 54 F 2 ALA D 59 ? TYR D 62 ? ALA C 59 TYR C 62 F 3 ARG D 83 ? LYS D 84 ? ARG C 83 LYS C 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 7 ? N ILE A 7 O TRP C 113 ? O TRP A 113 A 2 3 N THR C 105 ? N THR A 105 O ALA C 125 ? O ALA A 125 A 3 4 O ILE C 122 ? O ILE A 122 N TYR C 25 ? N TYR A 25 B 1 2 N SER C 46 ? N SER A 46 O TYR C 65 ? O TYR A 65 C 1 2 N ARG C 53 ? N ARG A 53 O TRP C 60 ? O TRP A 60 C 2 3 N LEU C 61 ? N LEU A 61 O ARG C 83 ? O ARG A 83 D 1 2 N ILE D 7 ? N ILE C 7 O TRP D 113 ? O TRP C 113 D 2 3 N TYR D 112 ? N TYR C 112 O LYS D 119 ? O LYS C 119 D 3 4 O ILE D 122 ? O ILE C 122 N TYR D 25 ? N TYR C 25 E 1 2 N ASP D 20 ? N ASP C 20 O LYS D 126 ? O LYS C 126 F 1 2 N ARG D 53 ? N ARG C 53 O TRP D 60 ? O TRP C 60 F 2 3 N LEU D 61 ? N LEU C 61 O ARG D 83 ? O ARG C 83 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B U 16 ? ? "C1'" B U 16 ? ? "C2'" B U 16 ? ? 122.48 114.00 8.48 1.30 N 2 1 "C2'" B G 18 ? ? "C3'" B G 18 ? ? "O3'" B G 18 ? ? 123.49 113.70 9.79 1.60 N 3 1 N1 B C 40 ? ? "C1'" B C 40 ? ? "C2'" B C 40 ? ? 122.62 114.00 8.62 1.30 N 4 1 N A TYR 62 ? ? CA A TYR 62 ? ? C A TYR 62 ? ? 128.04 111.00 17.04 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 9 ? ? -122.72 -50.49 2 1 GLU A 14 ? ? -64.97 47.58 3 1 ALA A 15 ? ? -165.91 -10.22 4 1 ASP A 20 ? ? 58.42 100.07 5 1 ALA A 27 ? ? -5.03 -136.79 6 1 SER A 34 ? ? -29.84 -51.65 7 1 GLU A 41 ? ? -61.31 0.98 8 1 LYS A 42 ? ? 101.75 -65.61 9 1 GLU A 55 ? ? -89.80 -129.80 10 1 ASN A 56 ? ? -61.40 89.45 11 1 LYS A 70 ? ? -55.92 77.55 12 1 HIS A 77 ? ? 68.66 72.13 13 1 PRO A 79 ? ? -49.55 -11.55 14 1 ARG A 81 ? ? 14.96 134.47 15 1 LEU A 87 ? ? -146.00 12.34 16 1 HIS A 88 ? ? 78.00 115.73 17 1 GLN A 100 ? ? -66.43 -100.89 18 1 GLU A 101 ? ? -1.21 -55.70 19 1 TYR A 104 ? ? -52.74 179.47 20 1 ASN A 116 ? ? 44.95 28.83 21 1 LYS A 126 ? ? -111.91 -167.41 22 1 LYS A 129 ? ? 77.48 -45.00 23 1 ILE C 9 ? ? -152.59 -66.47 24 1 ALA C 10 ? ? -80.51 -134.06 25 1 GLU C 11 ? ? 105.19 120.62 26 1 ILE C 21 ? ? -34.75 142.74 27 1 ALA C 27 ? ? -64.68 -77.48 28 1 LYS C 42 ? ? 133.77 -41.74 29 1 VAL C 45 ? ? -151.65 73.34 30 1 GLU C 55 ? ? -108.57 -132.57 31 1 ASN C 63 ? ? 69.71 61.90 32 1 LYS C 70 ? ? -49.82 82.09 33 1 HIS C 77 ? ? 76.76 103.45 34 1 PRO C 79 ? ? -16.94 -40.38 35 1 ARG C 81 ? ? -40.14 155.54 36 1 GLN C 100 ? ? -76.84 -79.19 37 1 GLU C 101 ? ? -31.03 -70.91 38 1 TYR C 104 ? ? -82.85 -142.58 39 1 LYS C 114 ? ? -156.69 86.26 40 1 ASN C 115 ? ? 66.82 60.28 41 1 LYS C 126 ? ? -115.55 -159.92 42 1 LYS C 129 ? ? -54.34 -94.58 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U B 16 ? ? 0.099 'SIDE CHAIN' 2 1 U B 28 ? ? 0.067 'SIDE CHAIN' 3 1 C B 40 ? ? 0.097 'SIDE CHAIN' 4 1 U D 28 ? ? 0.072 'SIDE CHAIN' 5 1 U D 32 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B G 1 ? A G 1 2 1 Y 1 B G 2 ? A G 2 3 1 Y 1 B G 3 ? A G 3 4 1 Y 1 B G 4 ? A G 4 5 1 Y 1 B G 5 ? A G 5 6 1 Y 1 B C 6 ? A C 6 7 1 Y 1 B G 7 ? A G 7 8 1 Y 1 B G 8 ? A G 8 9 1 Y 1 B A 9 ? A A 9 10 1 Y 1 B A 10 ? A A 10 11 1 Y 1 B A 11 ? A A 11 12 1 Y 1 B G 12 ? A G 12 13 1 Y 1 B C 58 ? A C 58 14 1 Y 1 B G 59 ? A G 59 15 1 Y 1 B C 60 ? A C 60 16 1 Y 1 B C 61 ? A C 61 17 1 Y 1 B U 62 ? A U 62 18 1 Y 1 B C 63 ? A C 63 19 1 Y 1 B C 64 ? A C 64 20 1 Y 1 B A 65 ? A A 65 21 1 Y 1 B C 66 ? A C 66 22 1 Y 1 B C 67 ? A C 67 23 1 Y 1 B A 68 ? A A 68 24 1 Y 1 D G 1 ? B G 1 25 1 Y 1 D G 2 ? B G 2 26 1 Y 1 D G 3 ? B G 3 27 1 Y 1 D G 4 ? B G 4 28 1 Y 1 D G 5 ? B G 5 29 1 Y 1 D C 6 ? B C 6 30 1 Y 1 D G 7 ? B G 7 31 1 Y 1 D G 8 ? B G 8 32 1 Y 1 D A 9 ? B A 9 33 1 Y 1 D A 10 ? B A 10 34 1 Y 1 D A 11 ? B A 11 35 1 Y 1 D G 12 ? B G 12 36 1 Y 1 D G 13 ? B G 13 37 1 Y 1 D A 14 ? B A 14 38 1 Y 1 D U 15 ? B U 15 39 1 Y 1 D C 40 ? B C 40 40 1 Y 1 D G 41 ? B G 41 41 1 Y 1 D C 42 ? B C 42 42 1 Y 1 D G 43 ? B G 43 43 1 Y 1 D G 44 ? B G 44 44 1 Y 1 D G 45 ? B G 45 45 1 Y 1 D U 46 ? B U 46 46 1 Y 1 D U 47 ? B U 47 47 1 Y 1 D C 48 ? B C 48 48 1 Y 1 D G 49 ? B G 49 49 1 Y 1 D A 50 ? B A 50 50 1 Y 1 D U 51 ? B U 51 51 1 Y 1 D U 52 ? B U 52 52 1 Y 1 D C 53 ? B C 53 53 1 Y 1 D C 54 ? B C 54 54 1 Y 1 D C 55 ? B C 55 55 1 Y 1 D G 56 ? B G 56 56 1 Y 1 D C 57 ? B C 57 57 1 Y 1 D C 58 ? B C 58 58 1 Y 1 D G 59 ? B G 59 59 1 Y 1 D C 60 ? B C 60 60 1 Y 1 D C 61 ? B C 61 61 1 Y 1 D U 62 ? B U 62 62 1 Y 1 D C 63 ? B C 63 63 1 Y 1 D C 64 ? B C 64 64 1 Y 1 D A 65 ? B A 65 65 1 Y 1 D C 66 ? B C 66 66 1 Y 1 D C 67 ? B C 67 67 1 Y 1 D A 68 ? B A 68 68 1 Y 1 A GLY 1 ? C GLY 1 69 1 Y 1 A LYS 2 ? C LYS 2 70 1 Y 1 A THR 73 ? C THR 73 71 1 Y 1 A ILE 74 ? C ILE 74 72 1 Y 1 A GLU 75 ? C GLU 75 73 1 Y 1 A TYR 131 ? C TYR 131 74 1 Y 1 A ASP 132 ? C ASP 132 75 1 Y 1 A ARG 133 ? C ARG 133 76 1 Y 1 A ARG 134 ? C ARG 134 77 1 Y 1 A ARG 135 ? C ARG 135 78 1 Y 1 A GLU 136 ? C GLU 136 79 1 Y 1 A LEU 137 ? C LEU 137 80 1 Y 1 A LYS 138 ? C LYS 138 81 1 Y 1 A GLU 139 ? C GLU 139 82 1 Y 1 A LYS 140 ? C LYS 140 83 1 Y 1 A ALA 141 ? C ALA 141 84 1 Y 1 A MET 142 ? C MET 142 85 1 Y 1 A LYS 143 ? C LYS 143 86 1 Y 1 A ARG 144 ? C ARG 144 87 1 Y 1 A GLU 145 ? C GLU 145 88 1 Y 1 A LEU 146 ? C LEU 146 89 1 Y 1 A GLU 147 ? C GLU 147 90 1 Y 1 A ARG 148 ? C ARG 148 91 1 Y 1 A GLU 149 ? C GLU 149 92 1 Y 1 A PHE 150 ? C PHE 150 93 1 Y 1 A LYS 151 ? C LYS 151 94 1 Y 1 A GLY 152 ? C GLY 152 95 1 Y 1 A LYS 153 ? C LYS 153 96 1 Y 1 A ILE 154 ? C ILE 154 97 1 Y 1 A HIS 155 ? C HIS 155 98 1 Y 1 A LEU 156 ? C LEU 156 99 1 Y 1 C GLY 1 ? D GLY 1 100 1 Y 1 C LYS 2 ? D LYS 2 101 1 Y 1 C THR 73 ? D THR 73 102 1 Y 1 C ILE 74 ? D ILE 74 103 1 Y 1 C GLU 75 ? D GLU 75 104 1 Y 1 C TYR 131 ? D TYR 131 105 1 Y 1 C ASP 132 ? D ASP 132 106 1 Y 1 C ARG 133 ? D ARG 133 107 1 Y 1 C ARG 134 ? D ARG 134 108 1 Y 1 C ARG 135 ? D ARG 135 109 1 Y 1 C GLU 136 ? D GLU 136 110 1 Y 1 C LEU 137 ? D LEU 137 111 1 Y 1 C LYS 138 ? D LYS 138 112 1 Y 1 C GLU 139 ? D GLU 139 113 1 Y 1 C LYS 140 ? D LYS 140 114 1 Y 1 C ALA 141 ? D ALA 141 115 1 Y 1 C MET 142 ? D MET 142 116 1 Y 1 C LYS 143 ? D LYS 143 117 1 Y 1 C ARG 144 ? D ARG 144 118 1 Y 1 C GLU 145 ? D GLU 145 119 1 Y 1 C LEU 146 ? D LEU 146 120 1 Y 1 C GLU 147 ? D GLU 147 121 1 Y 1 C ARG 148 ? D ARG 148 122 1 Y 1 C GLU 149 ? D GLU 149 123 1 Y 1 C PHE 150 ? D PHE 150 124 1 Y 1 C LYS 151 ? D LYS 151 125 1 Y 1 C GLY 152 ? D GLY 152 126 1 Y 1 C LYS 153 ? D LYS 153 127 1 Y 1 C ILE 154 ? D ILE 154 128 1 Y 1 C HIS 155 ? D HIS 155 129 1 Y 1 C LEU 156 ? D LEU 156 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TRP N N N N 414 TRP CA C N S 415 TRP C C N N 416 TRP O O N N 417 TRP CB C N N 418 TRP CG C Y N 419 TRP CD1 C Y N 420 TRP CD2 C Y N 421 TRP NE1 N Y N 422 TRP CE2 C Y N 423 TRP CE3 C Y N 424 TRP CZ2 C Y N 425 TRP CZ3 C Y N 426 TRP CH2 C Y N 427 TRP OXT O N N 428 TRP H H N N 429 TRP H2 H N N 430 TRP HA H N N 431 TRP HB2 H N N 432 TRP HB3 H N N 433 TRP HD1 H N N 434 TRP HE1 H N N 435 TRP HE3 H N N 436 TRP HZ2 H N N 437 TRP HZ3 H N N 438 TRP HH2 H N N 439 TRP HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 U OP3 O N N 465 U P P N N 466 U OP1 O N N 467 U OP2 O N N 468 U "O5'" O N N 469 U "C5'" C N N 470 U "C4'" C N R 471 U "O4'" O N N 472 U "C3'" C N S 473 U "O3'" O N N 474 U "C2'" C N R 475 U "O2'" O N N 476 U "C1'" C N R 477 U N1 N N N 478 U C2 C N N 479 U O2 O N N 480 U N3 N N N 481 U C4 C N N 482 U O4 O N N 483 U C5 C N N 484 U C6 C N N 485 U HOP3 H N N 486 U HOP2 H N N 487 U "H5'" H N N 488 U "H5''" H N N 489 U "H4'" H N N 490 U "H3'" H N N 491 U "HO3'" H N N 492 U "H2'" H N N 493 U "HO2'" H N N 494 U "H1'" H N N 495 U H3 H N N 496 U H5 H N N 497 U H6 H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 U OP3 P sing N N 458 U OP3 HOP3 sing N N 459 U P OP1 doub N N 460 U P OP2 sing N N 461 U P "O5'" sing N N 462 U OP2 HOP2 sing N N 463 U "O5'" "C5'" sing N N 464 U "C5'" "C4'" sing N N 465 U "C5'" "H5'" sing N N 466 U "C5'" "H5''" sing N N 467 U "C4'" "O4'" sing N N 468 U "C4'" "C3'" sing N N 469 U "C4'" "H4'" sing N N 470 U "O4'" "C1'" sing N N 471 U "C3'" "O3'" sing N N 472 U "C3'" "C2'" sing N N 473 U "C3'" "H3'" sing N N 474 U "O3'" "HO3'" sing N N 475 U "C2'" "O2'" sing N N 476 U "C2'" "C1'" sing N N 477 U "C2'" "H2'" sing N N 478 U "O2'" "HO2'" sing N N 479 U "C1'" N1 sing N N 480 U "C1'" "H1'" sing N N 481 U N1 C2 sing N N 482 U N1 C6 sing N N 483 U C2 O2 doub N N 484 U C2 N3 sing N N 485 U N3 C4 sing N N 486 U N3 H3 sing N N 487 U C4 O4 doub N N 488 U C4 C5 sing N N 489 U C5 C6 doub N N 490 U C5 H5 sing N N 491 U C6 H6 sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P6V 'double helix' 1P6V 'a-form double helix' 1P6V 'hairpin loop' 1P6V 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 19 1_555 A G 38 1_555 -4.597 0.226 -1.644 -27.254 -3.490 -1.519 1 B_A19:G38_B B 19 ? B 38 ? ? ? 1 A C 20 1_555 A G 37 1_555 -0.144 -0.159 -0.746 4.763 -2.982 0.520 2 B_C20:G37_B B 20 ? B 37 ? 19 1 1 A G 21 1_555 A C 36 1_555 -0.858 -0.279 -0.236 2.686 -10.732 3.683 3 B_G21:C36_B B 21 ? B 36 ? 19 1 1 A G 22 1_555 A U 35 1_555 -2.349 -0.689 -0.906 -11.030 -19.048 5.067 4 B_G22:U35_B B 22 ? B 35 ? 28 ? 1 A G 23 1_555 A C 34 1_555 -0.194 -0.237 0.132 -6.971 -8.374 3.337 5 B_G23:C34_B B 23 ? B 34 ? 19 1 1 A G 24 1_555 A C 33 1_555 -0.346 0.168 0.554 9.785 -2.689 10.835 6 B_G24:C33_B B 24 ? B 33 ? ? 1 1 A A 25 1_555 A U 32 1_555 -0.588 0.208 0.490 25.038 3.676 6.227 7 B_A25:U32_B B 25 ? B 32 ? 20 1 1 A C 26 1_555 A G 31 1_555 1.211 -0.419 0.464 3.994 10.411 6.607 8 B_C26:G31_B B 26 ? B 31 ? 19 1 1 A G 41 1_555 A C 57 1_555 0.373 -0.188 1.431 -1.216 -27.023 -14.399 9 B_G41:C57_B B 41 ? B 57 ? 19 1 1 A C 42 1_555 A G 56 1_555 2.060 -0.554 0.523 -18.500 -17.415 -15.307 10 B_C42:G56_B B 42 ? B 56 ? ? ? 1 A G 43 1_555 A C 55 1_555 -0.305 0.161 0.836 14.300 -1.154 -2.954 11 B_G43:C55_B B 43 ? B 55 ? 19 1 1 A G 44 1_555 A C 54 1_555 -1.043 -0.478 0.043 4.309 -6.907 -12.734 12 B_G44:C54_B B 44 ? B 54 ? 19 1 1 A G 45 1_555 A C 53 1_555 1.304 -0.214 -1.339 -26.641 -8.354 -18.915 13 B_G45:C53_B B 45 ? B 53 ? ? 1 1 A U 46 1_555 A A 50 1_555 0.225 1.735 0.489 6.215 30.474 165.483 14 B_U46:A50_B B 46 ? B 50 ? ? 2 1 B A 19 1_555 B G 38 1_555 -5.737 -0.819 -2.018 -28.883 9.993 -7.206 15 D_A19:G38_D D 19 ? D 38 ? ? ? 1 B C 20 1_555 B G 37 1_555 -0.165 -0.164 -0.754 4.430 -2.675 0.858 16 D_C20:G37_D D 20 ? D 37 ? 19 1 1 B G 21 1_555 B C 36 1_555 -0.862 -0.290 -0.290 1.559 -10.615 3.681 17 D_G21:C36_D D 21 ? D 36 ? 19 1 1 B G 22 1_555 B U 35 1_555 -2.348 -0.694 -1.006 -12.175 -18.649 5.065 18 D_G22:U35_D D 22 ? D 35 ? 28 ? 1 B G 23 1_555 B C 34 1_555 -0.203 -0.234 0.125 -7.174 -7.519 3.490 19 D_G23:C34_D D 23 ? D 34 ? 19 1 1 B G 24 1_555 B C 33 1_555 -0.345 0.177 0.648 12.342 -1.708 10.678 20 D_G24:C33_D D 24 ? D 33 ? ? 1 1 B A 25 1_555 B U 32 1_555 -0.600 0.229 0.562 26.574 3.626 5.975 21 D_A25:U32_D D 25 ? D 32 ? 20 1 1 B C 26 1_555 B G 31 1_555 1.197 -0.411 0.478 4.218 11.142 6.515 22 D_C26:G31_D D 26 ? D 31 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 19 1_555 A G 38 1_555 A C 20 1_555 A G 37 1_555 -0.484 0.269 2.686 -13.918 3.870 42.959 0.057 -0.427 2.722 5.115 18.394 45.214 1 BB_A19C20:G37G38_BB B 19 ? B 38 ? B 20 ? B 37 ? 1 A C 20 1_555 A G 37 1_555 A G 21 1_555 A C 36 1_555 0.264 -1.279 3.106 -4.578 13.455 29.087 -4.360 -1.175 2.246 24.994 8.505 32.306 2 BB_C20G21:C36G37_BB B 20 ? B 37 ? B 21 ? B 36 ? 1 A G 21 1_555 A C 36 1_555 A G 22 1_555 A U 35 1_555 0.330 -1.712 3.334 3.197 19.034 28.991 -5.433 -0.123 1.908 33.718 -5.663 34.713 3 BB_G21G22:U35C36_BB B 21 ? B 36 ? B 22 ? B 35 ? 1 A G 22 1_555 A U 35 1_555 A G 23 1_555 A C 34 1_555 0.030 -0.943 3.408 -7.446 0.464 37.718 -1.494 -1.011 3.331 0.709 11.381 38.422 4 BB_G22G23:C34U35_BB B 22 ? B 35 ? B 23 ? B 34 ? 1 A G 23 1_555 A C 34 1_555 A G 24 1_555 A C 33 1_555 1.328 -2.122 2.598 1.444 1.565 28.029 -4.658 -2.468 2.542 3.225 -2.976 28.108 5 BB_G23G24:C33C34_BB B 23 ? B 34 ? B 24 ? B 33 ? 1 A G 24 1_555 A C 33 1_555 A A 25 1_555 A U 32 1_555 -0.860 -2.808 2.649 -2.791 1.839 22.219 -7.743 1.392 2.498 4.736 7.191 22.465 6 BB_G24A25:U32C33_BB B 24 ? B 33 ? B 25 ? B 32 ? 1 A A 25 1_555 A U 32 1_555 A C 26 1_555 A G 31 1_555 -0.472 -1.773 3.737 -3.056 11.846 40.544 -3.766 0.318 3.148 16.642 4.294 42.275 7 BB_A25C26:G31U32_BB B 25 ? B 32 ? B 26 ? B 31 ? 1 A G 41 1_555 A C 57 1_555 A C 42 1_555 A G 56 1_555 -1.148 -2.298 3.983 1.950 0.049 47.062 -2.881 1.630 3.933 0.061 -2.440 47.100 8 BB_G41C42:G56C57_BB B 41 ? B 57 ? B 42 ? B 56 ? 1 A C 42 1_555 A G 56 1_555 A G 43 1_555 A C 55 1_555 0.598 -2.035 1.974 -3.769 5.683 18.082 -7.463 -2.708 1.139 17.303 11.477 19.315 9 BB_C42G43:C55G56_BB B 42 ? B 56 ? B 43 ? B 55 ? 1 A G 43 1_555 A C 55 1_555 A G 44 1_555 A C 54 1_555 0.549 -2.861 3.240 5.915 13.036 23.625 -8.532 -0.005 1.566 28.709 -13.027 27.571 10 BB_G43G44:C54C55_BB B 43 ? B 55 ? B 44 ? B 54 ? 1 A G 44 1_555 A C 54 1_555 A G 45 1_555 A C 53 1_555 -0.553 -2.151 4.377 5.280 9.935 47.248 -3.592 1.190 3.799 12.194 -6.480 48.495 11 BB_G44G45:C53C54_BB B 44 ? B 54 ? B 45 ? B 53 ? 1 A G 45 1_555 A C 53 1_555 A U 46 1_555 A A 50 1_555 1.225 -1.813 2.268 -12.966 -28.599 -55.760 2.512 0.809 1.497 28.243 -12.805 -63.370 12 BB_G45U46:A50C53_BB B 45 ? B 53 ? B 46 ? B 50 ? 1 B A 19 1_555 B G 38 1_555 B C 20 1_555 B G 37 1_555 -0.375 0.407 2.624 -12.128 -4.021 50.572 0.682 -0.230 2.606 -4.622 13.942 52.058 13 DD_A19C20:G37G38_DD D 19 ? D 38 ? D 20 ? D 37 ? 1 B C 20 1_555 B G 37 1_555 B G 21 1_555 B C 36 1_555 0.241 -1.265 3.112 -4.676 13.142 29.060 -4.322 -1.161 2.278 24.489 8.714 32.169 14 DD_C20G21:C36G37_DD D 20 ? D 37 ? D 21 ? D 36 ? 1 B G 21 1_555 B C 36 1_555 B G 22 1_555 B U 35 1_555 0.334 -1.699 3.372 3.527 19.192 28.940 -5.452 -0.078 1.934 33.965 -6.242 34.787 15 DD_G21G22:U35C36_DD D 21 ? D 36 ? D 22 ? D 35 ? 1 B G 22 1_555 B U 35 1_555 B G 23 1_555 B C 34 1_555 0.030 -0.919 3.383 -8.147 0.313 37.811 -1.429 -1.081 3.299 0.476 12.396 38.648 16 DD_G22G23:C34U35_DD D 22 ? D 35 ? D 23 ? D 34 ? 1 B G 23 1_555 B C 34 1_555 B G 24 1_555 B C 33 1_555 1.342 -2.149 2.518 0.746 0.773 28.004 -4.579 -2.636 2.493 1.596 -1.541 28.024 17 DD_G23G24:C33C34_DD D 23 ? D 34 ? D 24 ? D 33 ? 1 B G 24 1_555 B C 33 1_555 B A 25 1_555 B U 32 1_555 -0.839 -2.862 2.628 -2.399 1.436 22.179 -7.804 1.457 2.515 3.714 6.204 22.352 18 DD_G24A25:U32C33_DD D 24 ? D 33 ? D 25 ? D 32 ? 1 B A 25 1_555 B U 32 1_555 B C 26 1_555 B G 31 1_555 -0.471 -1.809 3.740 -2.249 12.491 40.668 -3.849 0.406 3.099 17.466 3.145 42.523 19 DD_A25C26:G31U32_DD D 25 ? D 32 ? D 26 ? D 31 ? # _atom_sites.entry_id 1P6V _atom_sites.fract_transf_matrix[1][1] 0.010032 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010032 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004830 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_