HEADER OXIDOREDUCTASE 30-APR-03 1P74 TITLE CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) FROM HAEMOPHILUS TITLE 2 INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE 5-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: AROE OR HI0655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSX12 KEYWDS SHIKIMATE DEHYDROGENASE, HAEMOPHILUS INFLUENZAE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YE,F.VON DELFT,A.BROOUN,M.W.KNUTH,R.V.SWANSON,D.E.MCREE REVDAT 5 14-FEB-24 1P74 1 REMARK REVDAT 4 31-JAN-18 1P74 1 JRNL REMARK REVDAT 3 24-FEB-09 1P74 1 VERSN REVDAT 2 26-AUG-03 1P74 1 AUTHOR REVDAT 1 12-AUG-03 1P74 0 JRNL AUTH S.YE,F.VON DELFT,A.BROOUN,M.W.KNUTH,R.V.SWANSON,D.E.MCREE JRNL TITL THE CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) JRNL TITL 2 REVEALS A UNIQUE NADPH BINDING MODE JRNL REF J.BACTERIOL. V. 185 4144 2003 JRNL REFN ISSN 0021-9193 JRNL PMID 12837789 JRNL DOI 10.1128/JB.185.14.4144-4151.2003 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.441 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.008 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4200 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5685 ; 1.527 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 3.743 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 756 ;19.917 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3144 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1942 ; 0.262 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 322 ; 0.187 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.225 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.232 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2642 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4211 ; 1.245 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 2.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1474 ; 3.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 272 1 REMARK 3 1 B 1 B 272 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2060 ; 0.66 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2060 ; 0.25 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 102 REMARK 3 RESIDUE RANGE : A 238 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7630 79.4624 84.6002 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.0404 REMARK 3 T33: 0.1032 T12: 0.0285 REMARK 3 T13: 0.0025 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.8131 L22: 2.0286 REMARK 3 L33: 5.2523 L12: -1.1633 REMARK 3 L13: 0.1483 L23: 1.3588 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.0982 S13: 0.2140 REMARK 3 S21: -0.1576 S22: -0.0884 S23: -0.0689 REMARK 3 S31: -0.4377 S32: -0.0615 S33: 0.0535 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 191 REMARK 3 RESIDUE RANGE : A 197 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9065 67.6931 63.9943 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0038 REMARK 3 T33: 0.0717 T12: 0.0183 REMARK 3 T13: -0.0059 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 5.5946 L22: 1.4200 REMARK 3 L33: 4.6849 L12: -0.3007 REMARK 3 L13: 0.9523 L23: 0.7793 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.1652 S13: 0.1958 REMARK 3 S21: -0.1415 S22: 0.0015 S23: -0.0870 REMARK 3 S31: -0.3183 S32: 0.0797 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 102 REMARK 3 RESIDUE RANGE : B 238 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6570 30.9011 31.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.0841 REMARK 3 T33: 0.0396 T12: -0.0028 REMARK 3 T13: -0.0095 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.3301 L22: 3.9009 REMARK 3 L33: 1.6923 L12: -0.9132 REMARK 3 L13: -0.8211 L23: 0.8418 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.2357 S13: 0.1022 REMARK 3 S21: -0.1865 S22: -0.0205 S23: -0.1552 REMARK 3 S31: -0.0080 S32: 0.0172 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 190 REMARK 3 RESIDUE RANGE : B 197 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0864 52.4971 41.5972 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.0220 REMARK 3 T33: 0.0124 T12: -0.0086 REMARK 3 T13: 0.0146 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 5.6685 L22: 3.6713 REMARK 3 L33: 1.8195 L12: 0.4888 REMARK 3 L13: -0.7863 L23: 0.2896 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.3324 S13: 0.2213 REMARK 3 S21: -0.3195 S22: 0.0484 S23: -0.0199 REMARK 3 S31: -0.2323 S32: -0.0003 S33: -0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786, 0.9792, 0.9537 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 SODIUM CITRATE, 0.1M CHES, PH 8.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 20K, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.45950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.45950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 192 REMARK 465 SER A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 THR A 196 REMARK 465 GLY B 191 REMARK 465 LEU B 192 REMARK 465 SER B 193 REMARK 465 GLY B 194 REMARK 465 GLY B 195 REMARK 465 THR B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 44 NH2 ARG A 67 1.77 REMARK 500 OD2 ASP B 220 NZ LYS B 228 1.89 REMARK 500 O GLN B 163 O HOH B 330 2.05 REMARK 500 O HOH B 319 O HOH B 323 2.11 REMARK 500 O HOH B 313 O HOH B 330 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 45 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 GLN A 45 O - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU A 74 CA - C - O ANGL. DEV. = 19.7 DEGREES REMARK 500 GLU A 74 O - C - N ANGL. DEV. = -23.2 DEGREES REMARK 500 ASP A 99 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 93 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 99 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 101.63 -168.18 REMARK 500 PRO A 63 41.37 -107.85 REMARK 500 ALA A 141 32.13 -97.85 REMARK 500 THR A 151 -80.75 -102.73 REMARK 500 SER A 153 -66.18 -135.08 REMARK 500 THR A 219 -159.88 -97.57 REMARK 500 MET A 271 -96.23 -72.76 REMARK 500 ASN B 9 101.36 -162.98 REMARK 500 ILE B 11 -31.28 -142.98 REMARK 500 THR B 61 -169.14 -123.65 REMARK 500 ASN B 234 77.11 -63.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P77 RELATED DB: PDB DBREF 1P74 A 1 272 UNP P43876 AROE_HAEIN 1 272 DBREF 1P74 B 1 272 UNP P43876 AROE_HAEIN 1 272 SEQRES 1 A 272 MET ASP LEU TYR ALA VAL TRP GLY ASN PRO ILE ALA GLN SEQRES 2 A 272 SER LYS SER PRO LEU ILE GLN ASN LYS LEU ALA ALA GLN SEQRES 3 A 272 THR HIS GLN THR MET GLU TYR ILE ALA LYS LEU GLY ASP SEQRES 4 A 272 LEU ASP ALA PHE GLU GLN GLN LEU LEU ALA PHE PHE GLU SEQRES 5 A 272 GLU GLY ALA LYS GLY CYS ASN ILE THR SER PRO PHE LYS SEQRES 6 A 272 GLU ARG ALA TYR GLN LEU ALA ASP GLU TYR SER GLN ARG SEQRES 7 A 272 ALA LYS LEU ALA GLU ALA CYS ASN THR LEU LYS LYS LEU SEQRES 8 A 272 ASP ASP GLY LYS LEU TYR ALA ASP ASN THR ASP GLY ILE SEQRES 9 A 272 GLY LEU VAL THR ASP LEU GLN ARG LEU ASN TRP LEU ARG SEQRES 10 A 272 PRO ASN GLN HIS VAL LEU ILE LEU GLY ALA GLY GLY ALA SEQRES 11 A 272 THR LYS GLY VAL LEU LEU PRO LEU LEU GLN ALA GLN GLN SEQRES 12 A 272 ASN ILE VAL LEU ALA ASN ARG THR PHE SER LYS THR LYS SEQRES 13 A 272 GLU LEU ALA GLU ARG PHE GLN PRO TYR GLY ASN ILE GLN SEQRES 14 A 272 ALA VAL SER MET ASP SER ILE PRO LEU GLN THR TYR ASP SEQRES 15 A 272 LEU VAL ILE ASN ALA THR SER ALA GLY LEU SER GLY GLY SEQRES 16 A 272 THR ALA SER VAL ASP ALA GLU ILE LEU LYS LEU GLY SER SEQRES 17 A 272 ALA PHE TYR ASP MET GLN TYR ALA LYS GLY THR ASP THR SEQRES 18 A 272 PRO PHE ILE ALA LEU CYS LYS SER LEU GLY LEU THR ASN SEQRES 19 A 272 VAL SER ASP GLY PHE GLY MET LEU VAL ALA GLN ALA ALA SEQRES 20 A 272 HIS SER PHE HIS LEU TRP ARG GLY VAL MET PRO ASP PHE SEQRES 21 A 272 VAL SER VAL TYR GLU GLN LEU LYS LYS ALA MET LEU SEQRES 1 B 272 MET ASP LEU TYR ALA VAL TRP GLY ASN PRO ILE ALA GLN SEQRES 2 B 272 SER LYS SER PRO LEU ILE GLN ASN LYS LEU ALA ALA GLN SEQRES 3 B 272 THR HIS GLN THR MET GLU TYR ILE ALA LYS LEU GLY ASP SEQRES 4 B 272 LEU ASP ALA PHE GLU GLN GLN LEU LEU ALA PHE PHE GLU SEQRES 5 B 272 GLU GLY ALA LYS GLY CYS ASN ILE THR SER PRO PHE LYS SEQRES 6 B 272 GLU ARG ALA TYR GLN LEU ALA ASP GLU TYR SER GLN ARG SEQRES 7 B 272 ALA LYS LEU ALA GLU ALA CYS ASN THR LEU LYS LYS LEU SEQRES 8 B 272 ASP ASP GLY LYS LEU TYR ALA ASP ASN THR ASP GLY ILE SEQRES 9 B 272 GLY LEU VAL THR ASP LEU GLN ARG LEU ASN TRP LEU ARG SEQRES 10 B 272 PRO ASN GLN HIS VAL LEU ILE LEU GLY ALA GLY GLY ALA SEQRES 11 B 272 THR LYS GLY VAL LEU LEU PRO LEU LEU GLN ALA GLN GLN SEQRES 12 B 272 ASN ILE VAL LEU ALA ASN ARG THR PHE SER LYS THR LYS SEQRES 13 B 272 GLU LEU ALA GLU ARG PHE GLN PRO TYR GLY ASN ILE GLN SEQRES 14 B 272 ALA VAL SER MET ASP SER ILE PRO LEU GLN THR TYR ASP SEQRES 15 B 272 LEU VAL ILE ASN ALA THR SER ALA GLY LEU SER GLY GLY SEQRES 16 B 272 THR ALA SER VAL ASP ALA GLU ILE LEU LYS LEU GLY SER SEQRES 17 B 272 ALA PHE TYR ASP MET GLN TYR ALA LYS GLY THR ASP THR SEQRES 18 B 272 PRO PHE ILE ALA LEU CYS LYS SER LEU GLY LEU THR ASN SEQRES 19 B 272 VAL SER ASP GLY PHE GLY MET LEU VAL ALA GLN ALA ALA SEQRES 20 B 272 HIS SER PHE HIS LEU TRP ARG GLY VAL MET PRO ASP PHE SEQRES 21 B 272 VAL SER VAL TYR GLU GLN LEU LYS LYS ALA MET LEU FORMUL 3 HOH *133(H2 O) HELIX 1 1 LYS A 15 THR A 27 1 13 HELIX 2 2 ALA A 42 GLU A 53 1 12 HELIX 3 3 PHE A 64 GLN A 70 1 7 HELIX 4 4 SER A 76 GLU A 83 1 8 HELIX 5 5 THR A 101 LEU A 113 1 13 HELIX 6 6 GLY A 128 GLY A 133 5 6 HELIX 7 7 VAL A 134 ALA A 141 1 8 HELIX 8 8 SER A 153 GLN A 163 1 11 HELIX 9 9 PRO A 164 GLY A 166 5 3 HELIX 10 10 ASP A 200 LYS A 205 1 6 HELIX 11 11 THR A 221 LEU A 230 1 10 HELIX 12 12 GLY A 238 GLY A 255 1 18 HELIX 13 13 ASP A 259 ALA A 270 1 12 HELIX 14 14 LYS B 15 THR B 27 1 13 HELIX 15 15 ALA B 42 GLU B 53 1 12 HELIX 16 16 PHE B 64 GLN B 70 1 7 HELIX 17 17 SER B 76 GLU B 83 1 8 HELIX 18 18 THR B 101 LEU B 113 1 13 HELIX 19 19 THR B 131 ALA B 141 1 11 HELIX 20 20 THR B 151 GLN B 163 1 13 HELIX 21 21 PRO B 164 GLY B 166 5 3 HELIX 22 22 ASP B 174 ILE B 176 5 3 HELIX 23 23 ASP B 200 LYS B 205 1 6 HELIX 24 24 THR B 221 LEU B 230 1 10 HELIX 25 25 GLY B 238 GLY B 255 1 18 HELIX 26 26 ASP B 259 LEU B 272 1 14 SHEET 1 A 6 MET A 31 LEU A 37 0 SHEET 2 A 6 ASP A 2 GLY A 8 1 N VAL A 6 O LYS A 36 SHEET 3 A 6 GLY A 57 ILE A 60 1 O ASN A 59 N TRP A 7 SHEET 4 A 6 THR A 87 LYS A 90 -1 O LEU A 88 N CYS A 58 SHEET 5 A 6 LEU A 96 ASP A 99 -1 O ASP A 99 N THR A 87 SHEET 6 A 6 GLU A 74 TYR A 75 1 N GLU A 74 O ALA A 98 SHEET 1 B 6 ILE A 168 SER A 172 0 SHEET 2 B 6 ASN A 144 ASN A 149 1 N LEU A 147 O VAL A 171 SHEET 3 B 6 HIS A 121 LEU A 125 1 N VAL A 122 O ASN A 144 SHEET 4 B 6 LEU A 183 ASN A 186 1 O ILE A 185 N LEU A 123 SHEET 5 B 6 PHE A 210 ASP A 212 1 O TYR A 211 N ASN A 186 SHEET 6 B 6 VAL A 235 SER A 236 1 O SER A 236 N PHE A 210 SHEET 1 C 6 MET B 31 LEU B 37 0 SHEET 2 C 6 ASP B 2 GLY B 8 1 N VAL B 6 O LYS B 36 SHEET 3 C 6 GLY B 57 ILE B 60 1 O ASN B 59 N ALA B 5 SHEET 4 C 6 THR B 87 LYS B 90 -1 O LEU B 88 N CYS B 58 SHEET 5 C 6 LEU B 96 ASP B 99 -1 O TYR B 97 N LYS B 89 SHEET 6 C 6 GLU B 74 TYR B 75 1 N GLU B 74 O ALA B 98 SHEET 1 D 6 ILE B 168 SER B 172 0 SHEET 2 D 6 ASN B 144 ASN B 149 1 N LEU B 147 O GLN B 169 SHEET 3 D 6 HIS B 121 LEU B 125 1 N VAL B 122 O ASN B 144 SHEET 4 D 6 LEU B 183 ASN B 186 1 O ILE B 185 N LEU B 123 SHEET 5 D 6 PHE B 210 ASP B 212 1 O TYR B 211 N ASN B 186 SHEET 6 D 6 VAL B 235 SER B 236 1 O SER B 236 N PHE B 210 CISPEP 1 ASN A 9 PRO A 10 0 2.27 CISPEP 2 SER A 62 PRO A 63 0 3.83 CISPEP 3 ASN B 9 PRO B 10 0 4.28 CISPEP 4 SER B 62 PRO B 63 0 -1.97 CRYST1 78.220 86.580 92.919 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010762 0.00000