HEADER OXIDOREDUCTASE 30-APR-03 1P77 TITLE CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) FROM HAEMOPHILUS TITLE 2 INFLUENZAE CAVEAT 1P77 CHIRALITY ERROR AT THE CB CENTER OF MET A 271. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE 5-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SHIKIMATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: AROE OR HI0655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSX12 KEYWDS SHIKIMATE DEHYDROGENASE, HAEMOPHILUS INFLUENZAE, NADPH, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YE,F.VON DELFT,A.BROOUN,M.W.KNUTH,R.V.SWANSON,D.E.MCREE REVDAT 4 16-AUG-23 1P77 1 REMARK ATOM REVDAT 3 31-JAN-18 1P77 1 JRNL REVDAT 2 24-FEB-09 1P77 1 VERSN REVDAT 1 12-AUG-03 1P77 0 JRNL AUTH S.YE,F.VON DELFT,A.BROOUN,M.W.KNUTH,R.V.SWANSON,D.E.MCREE JRNL TITL THE CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) JRNL TITL 2 REVEALS A UNIQUE NADPH BINDING MODE JRNL REF J.BACTERIOL. V. 185 4144 2003 JRNL REFN ISSN 0021-9193 JRNL PMID 12837789 JRNL DOI 10.1128/JB.185.14.4144-4151.2003 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2129 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2888 ; 1.967 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 5.291 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 374 ;14.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.226 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1581 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1100 ; 0.250 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 254 ; 0.229 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.200 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.598 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1317 ; 0.241 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2098 ; 0.490 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 812 ; 0.891 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 1.473 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 102 REMARK 3 RESIDUE RANGE : A 238 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8679 26.2422 4.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0029 REMARK 3 T33: 0.0066 T12: -0.0012 REMARK 3 T13: 0.0061 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.0636 L22: 2.2400 REMARK 3 L33: 1.7107 L12: 0.0804 REMARK 3 L13: -0.5387 L23: -0.4569 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.0314 S13: -0.0515 REMARK 3 S21: -0.0889 S22: 0.0311 S23: -0.0157 REMARK 3 S31: 0.0273 S32: -0.0055 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 190 REMARK 3 RESIDUE RANGE : A 198 A 237 REMARK 3 RESIDUE RANGE : A 300 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0671 7.4753 18.3078 REMARK 3 T TENSOR REMARK 3 T11: 0.0830 T22: 0.0430 REMARK 3 T33: 0.0266 T12: -0.0164 REMARK 3 T13: 0.0181 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.8112 L22: 2.4065 REMARK 3 L33: 2.0029 L12: -0.2577 REMARK 3 L13: 0.6708 L23: -0.9949 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.0332 S13: -0.1569 REMARK 3 S21: -0.2194 S22: -0.0563 S23: -0.1033 REMARK 3 S31: 0.2456 S32: 0.1038 S33: 0.0337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : 0.52500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 0.15 M CA ACETATE, 0.1 M REMARK 280 IMIDAZOLE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.18250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.18250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.02700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.36400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.02700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.36400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.18250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.02700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.36400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.18250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.02700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.36400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 383 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 484 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 191 REMARK 465 LEU A 192 REMARK 465 SER A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 THR A 196 REMARK 465 ALA A 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 392 O HOH A 406 1.76 REMARK 500 O HOH A 362 O HOH A 378 1.83 REMARK 500 O ASP A 92 O HOH A 369 1.91 REMARK 500 O HOH A 413 O HOH A 419 1.92 REMARK 500 O HOH A 425 O HOH A 436 1.92 REMARK 500 O HOH A 362 O HOH A 406 1.98 REMARK 500 OE2 GLU A 265 O HOH A 325 2.08 REMARK 500 O HOH A 451 O HOH A 520 2.08 REMARK 500 O HOH A 426 O HOH A 437 2.16 REMARK 500 O ALA A 190 O HOH A 456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 411 O HOH A 416 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 67 C ARG A 67 O -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 99 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 HIS A 121 ND1 - CE1 - NE2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA A 190 C - N - CA ANGL. DEV. = 18.0 DEGREES REMARK 500 ASP A 237 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 254 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 MET A 271 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -168.12 -123.70 REMARK 500 PRO A 63 42.11 -105.77 REMARK 500 LEU A 116 49.99 -144.34 REMARK 500 ALA A 127 43.48 -140.34 REMARK 500 MET A 271 -50.36 -23.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 121 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 189 13.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATR A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P74 RELATED DB: PDB DBREF 1P77 A 1 272 UNP P43876 AROE_HAEIN 1 272 SEQRES 1 A 272 MET ASP LEU TYR ALA VAL TRP GLY ASN PRO ILE ALA GLN SEQRES 2 A 272 SER LYS SER PRO LEU ILE GLN ASN LYS LEU ALA ALA GLN SEQRES 3 A 272 THR HIS GLN THR MET GLU TYR ILE ALA LYS LEU GLY ASP SEQRES 4 A 272 LEU ASP ALA PHE GLU GLN GLN LEU LEU ALA PHE PHE GLU SEQRES 5 A 272 GLU GLY ALA LYS GLY CYS ASN ILE THR SER PRO PHE LYS SEQRES 6 A 272 GLU ARG ALA TYR GLN LEU ALA ASP GLU TYR SER GLN ARG SEQRES 7 A 272 ALA LYS LEU ALA GLU ALA CYS ASN THR LEU LYS LYS LEU SEQRES 8 A 272 ASP ASP GLY LYS LEU TYR ALA ASP ASN THR ASP GLY ILE SEQRES 9 A 272 GLY LEU VAL THR ASP LEU GLN ARG LEU ASN TRP LEU ARG SEQRES 10 A 272 PRO ASN GLN HIS VAL LEU ILE LEU GLY ALA GLY GLY ALA SEQRES 11 A 272 THR LYS GLY VAL LEU LEU PRO LEU LEU GLN ALA GLN GLN SEQRES 12 A 272 ASN ILE VAL LEU ALA ASN ARG THR PHE SER LYS THR LYS SEQRES 13 A 272 GLU LEU ALA GLU ARG PHE GLN PRO TYR GLY ASN ILE GLN SEQRES 14 A 272 ALA VAL SER MET ASP SER ILE PRO LEU GLN THR TYR ASP SEQRES 15 A 272 LEU VAL ILE ASN ALA THR SER ALA GLY LEU SER GLY GLY SEQRES 16 A 272 THR ALA SER VAL ASP ALA GLU ILE LEU LYS LEU GLY SER SEQRES 17 A 272 ALA PHE TYR ASP MET GLN TYR ALA LYS GLY THR ASP THR SEQRES 18 A 272 PRO PHE ILE ALA LEU CYS LYS SER LEU GLY LEU THR ASN SEQRES 19 A 272 VAL SER ASP GLY PHE GLY MET LEU VAL ALA GLN ALA ALA SEQRES 20 A 272 HIS SER PHE HIS LEU TRP ARG GLY VAL MET PRO ASP PHE SEQRES 21 A 272 VAL SER VAL TYR GLU GLN LEU LYS LYS ALA MET LEU HET ACT A 301 4 HET ATR A 300 31 HETNAM ACT ACETATE ION HETNAM ATR 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 ATR C10 H16 N5 O13 P3 FORMUL 4 HOH *257(H2 O) HELIX 1 1 LYS A 15 THR A 27 1 13 HELIX 2 2 ALA A 42 GLU A 53 1 12 HELIX 3 3 PHE A 64 ALA A 72 1 9 HELIX 4 4 SER A 76 GLU A 83 1 8 HELIX 5 5 THR A 101 LEU A 113 1 13 HELIX 6 6 GLY A 128 GLY A 133 1 6 HELIX 7 7 VAL A 134 ALA A 141 1 8 HELIX 8 8 THR A 151 GLN A 163 1 13 HELIX 9 9 PRO A 164 GLY A 166 5 3 HELIX 10 10 ASP A 174 ILE A 176 5 3 HELIX 11 11 ASP A 200 GLY A 207 1 8 HELIX 12 12 THR A 221 LEU A 230 1 10 HELIX 13 13 GLY A 238 GLY A 255 1 18 HELIX 14 14 ASP A 259 LEU A 272 1 14 SHEET 1 A 6 MET A 31 LEU A 37 0 SHEET 2 A 6 ASP A 2 GLY A 8 1 N VAL A 6 O LYS A 36 SHEET 3 A 6 GLY A 57 ILE A 60 1 O ASN A 59 N ALA A 5 SHEET 4 A 6 THR A 87 LYS A 90 -1 O LEU A 88 N CYS A 58 SHEET 5 A 6 LEU A 96 ASP A 99 -1 O TYR A 97 N LYS A 89 SHEET 6 A 6 GLU A 74 TYR A 75 1 N GLU A 74 O ALA A 98 SHEET 1 B 6 ILE A 168 SER A 172 0 SHEET 2 B 6 ASN A 144 ASN A 149 1 N LEU A 147 O GLN A 169 SHEET 3 B 6 HIS A 121 LEU A 125 1 N ILE A 124 O VAL A 146 SHEET 4 B 6 LEU A 183 ASN A 186 1 O ILE A 185 N LEU A 125 SHEET 5 B 6 PHE A 210 ASP A 212 1 O TYR A 211 N VAL A 184 SHEET 6 B 6 VAL A 235 SER A 236 1 O SER A 236 N PHE A 210 CISPEP 1 ASN A 9 PRO A 10 0 4.33 CISPEP 2 SER A 62 PRO A 63 0 -1.47 SITE 1 AC1 8 MET A 1 LYS A 89 PRO A 177 GLN A 179 SITE 2 AC1 8 TRP A 253 ARG A 254 GLY A 255 HOH A 415 SITE 1 AC2 19 GLY A 126 ALA A 127 GLY A 128 GLY A 129 SITE 2 AC2 19 ALA A 130 ASN A 149 ARG A 150 THR A 151 SITE 3 AC2 19 LYS A 154 THR A 188 SER A 189 ALA A 190 SITE 4 AC2 19 HOH A 348 HOH A 361 HOH A 445 HOH A 450 SITE 5 AC2 19 HOH A 485 HOH A 516 HOH A 535 CRYST1 84.054 82.728 82.365 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012141 0.00000