HEADER CHAPERONE 07-MAY-03 1P8G TITLE THE SOLUTION STRUCTURE OF APO COPZ FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIMILAR TO MERCURIC TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSCOPZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS M-X-C-X-X-C MOTIF, BETA-ALPHA-BETA-BETA-ALPHA-BETA SECONDARY KEYWDS 2 STRUCTURE, COPPER CHAPERONE, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR L.BANCI,I.BERTINI,R.DEL CONTE REVDAT 3 23-FEB-22 1P8G 1 REMARK SEQADV REVDAT 2 24-FEB-09 1P8G 1 VERSN REVDAT 1 25-NOV-03 1P8G 0 JRNL AUTH L.BANCI,I.BERTINI,R.DEL CONTE JRNL TITL SOLUTION STRUCTURE OF APO COPZ FROM BACILLUS SUBTILIS: JRNL TITL 2 FURTHER ANALYSIS OF THE CHANGES ASSOCIATED WITH THE PRESENCE JRNL TITL 3 OF COPPER JRNL REF BIOCHEMISTRY V. 42 13422 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14621987 JRNL DOI 10.1021/BI0353326 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AMBER 5.0 REMARK 3 AUTHORS : REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A TOTAL OF 1639 UPPER DISTANCE LIMITS REMARK 3 (OF WHICH 1431 MEANINGFUL), 31 DIHEDRAL PHI ANGLE CONSTRAINTS REMARK 3 AND 48 PSI ANGLE CONSTRAINTS WERE MEASURED AND USED IN THE REMARK 3 STRUCTURAL CALCULATIONS. 5 STEREOSPECIFIC ASSIGNMENTS WERE ALSO REMARK 3 OBTAINED FROM THE ANALYSIS OF HNHB SPECTRA AND 11 THROUGH THE REMARK 3 PROGRAM GLOMSA. REMARK 4 REMARK 4 1P8G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019138. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM APO-BSCOPZ; 2MM APO-BSCOPZ REMARK 210 LABELLED WITH 15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_15N HSQC REMARK 210 TOSCY; 15N-HSQC; HNHA; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, XEASY 1.3.13, REMARK 210 CORMA, MOLMOL 2.4, GLOMSA REMARK 210 METHOD USED : SIMULATE ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURE WITH THE LOWEST ENERGY REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE 500 MHZ SPECTROMETER IS EQUIPPED WITH A CRYO PROBE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 15 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 20 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 7 110.50 -34.38 REMARK 500 1 SER A 12 -132.39 -175.71 REMARK 500 1 CYS A 13 -51.50 -143.27 REMARK 500 1 GLN A 14 -46.86 -158.80 REMARK 500 1 CYS A 16 -47.04 -147.44 REMARK 500 1 SER A 31 -42.56 -131.00 REMARK 500 1 VAL A 33 59.12 -142.30 REMARK 500 1 ASN A 36 58.69 -150.01 REMARK 500 1 ALA A 48 -39.13 -36.95 REMARK 500 1 GLN A 63 -63.71 -120.13 REMARK 500 1 TYR A 65 52.98 -162.79 REMARK 500 1 ALA A 68 -70.44 -49.74 REMARK 500 1 LYS A 69 -174.46 163.07 REMARK 500 2 SER A 12 -170.22 65.64 REMARK 500 2 GLU A 21 -70.39 -66.13 REMARK 500 2 SER A 31 -44.57 -133.24 REMARK 500 2 VAL A 33 58.31 -141.11 REMARK 500 2 ASN A 36 55.86 -154.55 REMARK 500 2 TYR A 65 55.16 -161.98 REMARK 500 2 LYS A 69 172.70 168.74 REMARK 500 3 MET A 11 -152.36 -144.47 REMARK 500 3 CYS A 13 -48.25 -135.74 REMARK 500 3 GLN A 14 -155.67 62.14 REMARK 500 3 VAL A 17 18.48 51.89 REMARK 500 3 SER A 31 -45.43 -141.00 REMARK 500 3 VAL A 33 58.45 -144.48 REMARK 500 3 GLN A 63 -62.11 -105.45 REMARK 500 3 TYR A 65 51.43 -163.15 REMARK 500 3 LYS A 69 169.79 117.87 REMARK 500 4 SER A 12 74.38 -68.10 REMARK 500 4 HIS A 15 46.41 -82.64 REMARK 500 4 LYS A 18 -43.60 -179.85 REMARK 500 4 SER A 31 -47.34 -133.82 REMARK 500 4 VAL A 33 59.10 -141.54 REMARK 500 4 ASN A 36 58.03 -145.80 REMARK 500 4 TYR A 65 54.28 -67.89 REMARK 500 4 ALA A 68 -73.32 -62.45 REMARK 500 4 LYS A 69 174.91 175.80 REMARK 500 4 GLU A 71 -84.52 -84.04 REMARK 500 5 GLN A 7 122.12 -37.43 REMARK 500 5 MET A 11 -69.32 -96.45 REMARK 500 5 VAL A 17 62.17 -69.09 REMARK 500 5 LYS A 18 -40.29 178.09 REMARK 500 5 GLU A 21 -69.82 -91.01 REMARK 500 5 VAL A 33 58.24 -143.40 REMARK 500 5 ASN A 36 56.61 -149.29 REMARK 500 5 VAL A 53 -55.21 -25.53 REMARK 500 5 TYR A 65 51.22 -164.80 REMARK 500 5 LYS A 69 179.95 165.86 REMARK 500 6 SER A 12 -137.80 61.78 REMARK 500 REMARK 500 THIS ENTRY HAS 306 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 73 0.09 SIDE CHAIN REMARK 500 3 TYR A 65 0.09 SIDE CHAIN REMARK 500 6 PHE A 46 0.08 SIDE CHAIN REMARK 500 6 TYR A 65 0.08 SIDE CHAIN REMARK 500 6 ARG A 73 0.14 SIDE CHAIN REMARK 500 7 TYR A 65 0.18 SIDE CHAIN REMARK 500 7 ARG A 73 0.08 SIDE CHAIN REMARK 500 9 TYR A 65 0.09 SIDE CHAIN REMARK 500 11 TYR A 65 0.10 SIDE CHAIN REMARK 500 13 TYR A 65 0.14 SIDE CHAIN REMARK 500 15 PHE A 46 0.10 SIDE CHAIN REMARK 500 18 TYR A 65 0.08 SIDE CHAIN REMARK 500 20 PHE A 46 0.09 SIDE CHAIN REMARK 500 23 TYR A 65 0.11 SIDE CHAIN REMARK 500 24 PHE A 46 0.08 SIDE CHAIN REMARK 500 27 TYR A 65 0.08 SIDE CHAIN REMARK 500 28 TYR A 65 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K0V RELATED DB: PDB REMARK 900 COPPER TRAFFICKING: THE SOLUTION STRUCTURE OF COPPER LOADED REMARK 900 BACILLUS SUBTILIS COPZ DBREF 1P8G A 1 69 UNP O32221 COPZ_BACSU 1 69 SEQADV 1P8G ILE A 70 UNP O32221 CLONING ARTIFACT SEQADV 1P8G GLU A 71 UNP O32221 CLONING ARTIFACT SEQADV 1P8G GLY A 72 UNP O32221 CLONING ARTIFACT SEQADV 1P8G ARG A 73 UNP O32221 CLONING ARTIFACT SEQRES 1 A 73 MET GLU GLN LYS THR LEU GLN VAL GLU GLY MET SER CYS SEQRES 2 A 73 GLN HIS CYS VAL LYS ALA VAL GLU THR SER VAL GLY GLU SEQRES 3 A 73 LEU ASP GLY VAL SER ALA VAL HIS VAL ASN LEU GLU ALA SEQRES 4 A 73 GLY LYS VAL ASP VAL SER PHE ASP ALA ASP LYS VAL SER SEQRES 5 A 73 VAL LYS ASP ILE ALA ASP ALA ILE GLU ASP GLN GLY TYR SEQRES 6 A 73 ASP VAL ALA LYS ILE GLU GLY ARG HELIX 1 1 CYS A 16 GLU A 26 1 11 HELIX 2 3 SER A 52 ASP A 62 1 11 SHEET 1 A 4 VAL A 30 ASN A 36 0 SHEET 2 A 4 LYS A 41 PHE A 46 -1 O ASP A 43 N HIS A 34 SHEET 3 A 4 GLU A 2 GLN A 7 -1 N LYS A 4 O VAL A 44 SHEET 4 A 4 LYS A 69 ILE A 70 -1 N LYS A 69 O GLN A 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1