data_1P8K # _entry.id 1P8K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1P8K NDB PD0433 RCSB RCSB019142 WWPDB D_1000019142 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P8K _pdbx_database_status.recvd_initial_deposition_date 2003-05-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stoddard, B.L.' 1 'Bolduc, J.M.' 2 # _citation.id primary _citation.title ;Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor. ; _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 17 _citation.page_first 2875 _citation.page_last 2888 _citation.year 2003 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14633971 _citation.pdbx_database_id_DOI 10.1101/gad.1109003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bolduc, J.M.' 1 primary 'Spiegel, P.C.' 2 primary 'Chatterjee, P.' 3 primary 'Brady, K.L.' 4 primary 'Downing, M.E.' 5 primary 'Caprara, M.G.' 6 primary 'Waring, R.B.' 7 primary 'Stoddard, B.L.' 8 # _cell.entry_id 1P8K _cell.length_a 60.462 _cell.length_b 72.841 _cell.length_c 65.231 _cell.angle_alpha 90.00 _cell.angle_beta 108.21 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8K _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*GP*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*AP*GP*GP*TP*TP*TP*C)-3'" 5588.601 1 ? ? ? ? 2 polymer syn "5'-D(P*TP*CP*TP*GP*TP*AP*AP*AP*GP*CP*GP*CP*A)-3'" 3975.611 1 ? ? ? ? 3 polymer syn "5'-D(P*GP*CP*GP*CP*TP*TP*TP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3'" 4931.230 1 ? ? ? ? 4 polymer syn "5'-D(P*CP*CP*TP*CP*CP*TP*CP*AP*GP*CP*GP*CP*GP*CP*T)-3'" 4481.899 1 ? ? ? ? 5 polymer man 'Intron-encoded endonuclease I-AniI' 29615.154 1 3.1.-.- ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # _entity_name_com.entity_id 5 _entity_name_com.name 'mRNA maturase BI1, COB intron protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DA)(DG)(DG)(DA)(DG)(DG)(DT)(DT)(DT)(DC)' GCGCGCTGAGGAGGTTTC A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DG)(DT)(DA)(DA)(DA)(DG)(DC)(DG)(DC)(DA)' TCTGTAAAGCGCA B ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DC)(DT)(DT)(DT)(DA)(DC)(DA)(DG)(DA)(DG)(DA)(DA)(DA)' GCGCTTTACAGAGAAA C ? 4 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DC)(DT)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DC)(DT)' CCTCCTCAGCGCGCT D ? 5 'polypeptide(L)' no yes ;GSDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIE(MSE)VALRIRDKNH LKSFILPIFEKYP(MSE)FSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFS VYKLNKDDDYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYL LWLKQLRKISRYSEKIKIPSNY ; ;GSDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSF ILPIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDD DYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRK ISRYSEKIKIPSNY ; Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DG n 1 11 DG n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DT n 1 16 DT n 1 17 DT n 1 18 DC n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DC n 2 11 DG n 2 12 DC n 2 13 DA n 3 1 DG n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DT n 3 6 DT n 3 7 DT n 3 8 DA n 3 9 DC n 3 10 DA n 3 11 DG n 3 12 DA n 3 13 DG n 3 14 DA n 3 15 DA n 3 16 DA n 4 1 DC n 4 2 DC n 4 3 DT n 4 4 DC n 4 5 DC n 4 6 DT n 4 7 DC n 4 8 DA n 4 9 DG n 4 10 DC n 4 11 DG n 4 12 DC n 4 13 DG n 4 14 DC n 4 15 DT n 5 1 GLY n 5 2 SER n 5 3 ASP n 5 4 LEU n 5 5 THR n 5 6 TYR n 5 7 ALA n 5 8 TYR n 5 9 LEU n 5 10 VAL n 5 11 GLY n 5 12 LEU n 5 13 PHE n 5 14 GLU n 5 15 GLY n 5 16 ASP n 5 17 GLY n 5 18 TYR n 5 19 PHE n 5 20 SER n 5 21 ILE n 5 22 THR n 5 23 LYS n 5 24 LYS n 5 25 GLY n 5 26 LYS n 5 27 TYR n 5 28 LEU n 5 29 THR n 5 30 TYR n 5 31 GLU n 5 32 LEU n 5 33 GLY n 5 34 ILE n 5 35 GLU n 5 36 LEU n 5 37 SER n 5 38 ILE n 5 39 LYS n 5 40 ASP n 5 41 VAL n 5 42 GLN n 5 43 LEU n 5 44 ILE n 5 45 TYR n 5 46 LYS n 5 47 ILE n 5 48 LYS n 5 49 LYS n 5 50 ILE n 5 51 LEU n 5 52 GLY n 5 53 ILE n 5 54 GLY n 5 55 ILE n 5 56 VAL n 5 57 SER n 5 58 PHE n 5 59 ARG n 5 60 LYS n 5 61 ARG n 5 62 ASN n 5 63 GLU n 5 64 ILE n 5 65 GLU n 5 66 MSE n 5 67 VAL n 5 68 ALA n 5 69 LEU n 5 70 ARG n 5 71 ILE n 5 72 ARG n 5 73 ASP n 5 74 LYS n 5 75 ASN n 5 76 HIS n 5 77 LEU n 5 78 LYS n 5 79 SER n 5 80 PHE n 5 81 ILE n 5 82 LEU n 5 83 PRO n 5 84 ILE n 5 85 PHE n 5 86 GLU n 5 87 LYS n 5 88 TYR n 5 89 PRO n 5 90 MSE n 5 91 PHE n 5 92 SER n 5 93 ASN n 5 94 LYS n 5 95 GLN n 5 96 TYR n 5 97 ASP n 5 98 TYR n 5 99 LEU n 5 100 ARG n 5 101 PHE n 5 102 ARG n 5 103 ASN n 5 104 ALA n 5 105 LEU n 5 106 LEU n 5 107 SER n 5 108 GLY n 5 109 ILE n 5 110 ILE n 5 111 SER n 5 112 LEU n 5 113 GLU n 5 114 ASP n 5 115 LEU n 5 116 PRO n 5 117 ASP n 5 118 TYR n 5 119 THR n 5 120 ARG n 5 121 SER n 5 122 ASP n 5 123 GLU n 5 124 PRO n 5 125 LEU n 5 126 ASN n 5 127 SER n 5 128 ILE n 5 129 GLU n 5 130 SER n 5 131 ILE n 5 132 ILE n 5 133 ASN n 5 134 THR n 5 135 SER n 5 136 TYR n 5 137 PHE n 5 138 SER n 5 139 ALA n 5 140 TRP n 5 141 LEU n 5 142 VAL n 5 143 GLY n 5 144 PHE n 5 145 ILE n 5 146 GLU n 5 147 ALA n 5 148 GLU n 5 149 GLY n 5 150 CYS n 5 151 PHE n 5 152 SER n 5 153 VAL n 5 154 TYR n 5 155 LYS n 5 156 LEU n 5 157 ASN n 5 158 LYS n 5 159 ASP n 5 160 ASP n 5 161 ASP n 5 162 TYR n 5 163 LEU n 5 164 ILE n 5 165 ALA n 5 166 SER n 5 167 PHE n 5 168 ASP n 5 169 ILE n 5 170 ALA n 5 171 GLN n 5 172 ARG n 5 173 ASP n 5 174 GLY n 5 175 ASP n 5 176 ILE n 5 177 LEU n 5 178 ILE n 5 179 SER n 5 180 ALA n 5 181 ILE n 5 182 ARG n 5 183 LYS n 5 184 TYR n 5 185 LEU n 5 186 SER n 5 187 PHE n 5 188 THR n 5 189 THR n 5 190 LYS n 5 191 VAL n 5 192 TYR n 5 193 LEU n 5 194 ASP n 5 195 LYS n 5 196 THR n 5 197 ASN n 5 198 CYS n 5 199 SER n 5 200 LYS n 5 201 LEU n 5 202 LYS n 5 203 VAL n 5 204 THR n 5 205 SER n 5 206 VAL n 5 207 ARG n 5 208 SER n 5 209 VAL n 5 210 GLU n 5 211 ASN n 5 212 ILE n 5 213 ILE n 5 214 LYS n 5 215 PHE n 5 216 LEU n 5 217 GLN n 5 218 ASN n 5 219 ALA n 5 220 PRO n 5 221 VAL n 5 222 LYS n 5 223 LEU n 5 224 LEU n 5 225 GLY n 5 226 ASN n 5 227 LYS n 5 228 LYS n 5 229 LEU n 5 230 GLN n 5 231 TYR n 5 232 LEU n 5 233 LEU n 5 234 TRP n 5 235 LEU n 5 236 LYS n 5 237 GLN n 5 238 LEU n 5 239 ARG n 5 240 LYS n 5 241 ILE n 5 242 SER n 5 243 ARG n 5 244 TYR n 5 245 SER n 5 246 GLU n 5 247 LYS n 5 248 ILE n 5 249 LYS n 5 250 ILE n 5 251 PRO n 5 252 SER n 5 253 ASN n 5 254 TYR n # _entity_src_gen.entity_id 5 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Emericella _entity_src_gen.pdbx_gene_src_gene 'Aspergillus nidulans' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Emericella nidulans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 162425 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ANI1_EMENI P03880 5 ;DLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKINEIEMVALRIRDKNHLKSFIL PIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDDDY LIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRKIS RYSEKIKIPSNY ; 68 ? 2 PDB 1P8K 1P8K 1 ? ? ? 3 PDB 1P8K 1P8K 2 ? ? ? 4 PDB 1P8K 1P8K 3 ? ? ? 5 PDB 1P8K 1P8K 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1P8K Z 3 ? 254 ? P03880 68 ? 319 ? 3 254 2 2 1P8K A 1 ? 18 ? 1P8K 399 ? 416 ? 399 416 3 3 1P8K B 1 ? 13 ? 1P8K 417 ? 429 ? 417 429 4 4 1P8K C 1 ? 16 ? 1P8K 501 ? 516 ? 501 516 5 5 1P8K D 1 ? 15 ? 1P8K 517 ? 531 ? 517 531 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1P8K GLY Z 1 ? UNP P03880 ? ? 'CLONING ARTIFACT' 1 1 1 1P8K SER Z 2 ? UNP P03880 ? ? 'CLONING ARTIFACT' 2 2 1 1P8K ARG Z 61 ? UNP P03880 ILE 126 'SEE REMARK 999' 61 3 1 1P8K MSE Z 66 ? UNP P03880 MET 131 'MODIFIED RESIDUE' 66 4 1 1P8K MSE Z 90 ? UNP P03880 MET 155 'MODIFIED RESIDUE' 90 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1P8K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.48 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details 'PEG3350, KCl, MgCl2, sodium citrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG3350, ? ? ? 1 2 1 KCl ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 'sodium citrate' ? ? ? 1 5 2 KCl ? ? ? 1 6 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 93.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-11-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 1P8K _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs ? _reflns.percent_possible_obs 90.4 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.B_iso_Wilson_estimate 40.1 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 61.8 _reflns_shell.Rmerge_I_obs 0.21 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1P8K _refine.ls_d_res_high 2.6 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 29474 _refine.ls_number_reflns_obs 27760 _refine.ls_number_reflns_R_free 2630 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.247 _refine.ls_R_factor_obs 0.247 _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.264 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1P8K _refine_analyze.Luzzati_coordinate_error_obs 0.46 _refine_analyze.Luzzati_sigma_a_obs 0.75 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.53 _refine_analyze.Luzzati_sigma_a_free 0.86 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2085 _refine_hist.pdbx_number_atoms_nucleic_acid 1275 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3362 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 50 # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.6 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.45 _refine_ls_shell.percent_reflns_obs 61.8 _refine_ls_shell.R_factor_R_free 0.48 _refine_ls_shell.R_factor_R_free_error 0.03 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 302 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1P8K _struct.title 'The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factor' _struct.pdbx_descriptor 'Intron-encoded endonuclease I-AniI/DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P8K _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'HYDROLASE/DNA, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU E 4 ? ASP E 16 ? LEU Z 4 ASP Z 16 1 ? 13 HELX_P HELX_P2 2 ASP E 40 ? GLY E 52 ? ASP Z 40 GLY Z 52 1 ? 13 HELX_P HELX_P3 3 ASP E 73 ? TYR E 88 ? ASP Z 73 TYR Z 88 1 ? 16 HELX_P HELX_P4 4 LYS E 94 ? GLY E 108 ? LYS Z 94 GLY Z 108 1 ? 15 HELX_P HELX_P5 5 SER E 111 ? LEU E 115 ? SER Z 111 LEU Z 115 5 ? 5 HELX_P HELX_P6 6 SER E 127 ? THR E 134 ? SER Z 127 THR Z 134 1 ? 8 HELX_P HELX_P7 7 TYR E 136 ? GLY E 149 ? TYR Z 136 GLY Z 149 1 ? 14 HELX_P HELX_P8 8 GLY E 174 ? LEU E 185 ? GLY Z 174 LEU Z 185 1 ? 12 HELX_P HELX_P9 9 SER E 205 ? ASN E 218 ? SER Z 205 ASN Z 218 1 ? 14 HELX_P HELX_P10 10 GLY E 225 ? ILE E 241 ? GLY Z 225 ILE Z 241 1 ? 17 HELX_P HELX_P11 11 ILE E 241 ? GLU E 246 ? ILE Z 241 GLU Z 246 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? F MG . MG ? ? ? 1_555 B DT 1 OP1 ? ? B MG 602 B DT 417 1_555 ? ? ? ? ? ? ? 2.846 ? metalc2 metalc ? ? F MG . MG ? ? ? 1_555 E ALA 147 O ? ? B MG 602 Z ALA 147 1_555 ? ? ? ? ? ? ? 2.505 ? metalc3 metalc ? ? F MG . MG ? ? ? 1_555 E ASP 16 OD1 ? ? B MG 602 Z ASP 16 1_555 ? ? ? ? ? ? ? 2.915 ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 C DA 16 OP1 ? ? B MG 602 C DA 516 1_555 ? ? ? ? ? ? ? 2.545 ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 B DT 1 OP2 ? ? B MG 602 B DT 417 1_555 ? ? ? ? ? ? ? 2.466 ? covale1 covale ? ? E GLU 65 C ? ? ? 1_555 E MSE 66 N ? ? Z GLU 65 Z MSE 66 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? E MSE 66 C ? ? ? 1_555 E VAL 67 N ? ? Z MSE 66 Z VAL 67 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? E PRO 89 C ? ? ? 1_555 E MSE 90 N ? ? Z PRO 89 Z MSE 90 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? E MSE 90 C ? ? ? 1_555 E PHE 91 N ? ? Z MSE 90 Z PHE 91 1_555 ? ? ? ? ? ? ? 1.337 ? metalc6 metalc ? ? G MG . MG ? ? ? 1_555 E GLU 148 OE2 ? ? Z MG 601 Z GLU 148 1_555 ? ? ? ? ? ? ? 2.380 ? metalc7 metalc ? ? G MG . MG ? ? ? 1_555 E GLU 148 OE1 ? ? Z MG 601 Z GLU 148 1_555 ? ? ? ? ? ? ? 2.729 ? metalc8 metalc ? ? G MG . MG ? ? ? 1_555 E GLY 15 O ? ? Z MG 601 Z GLY 15 1_555 ? ? ? ? ? ? ? 2.045 ? metalc9 metalc ? ? G MG . MG ? ? ? 1_555 D DC 1 OP2 ? ? Z MG 601 D DC 517 1_555 ? ? ? ? ? ? ? 2.643 ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 D DC 1 OP3 ? ? Z MG 601 D DC 517 1_555 ? ? ? ? ? ? ? 2.860 ? metalc11 metalc ? ? G MG . MG ? ? ? 1_555 A DC 18 OP1 ? ? Z MG 601 A DC 416 1_555 ? ? ? ? ? ? ? 2.317 ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 D DC 14 N3 ? ? A DG 399 D DC 530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 D DC 14 O2 ? ? A DG 399 D DC 530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 D DC 14 N4 ? ? A DG 399 D DC 530 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 D DG 13 N1 ? ? A DC 400 D DG 529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 D DG 13 O6 ? ? A DC 400 D DG 529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 D DG 13 N2 ? ? A DC 400 D DG 529 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DC 12 N3 ? ? A DG 401 D DC 528 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DC 12 O2 ? ? A DG 401 D DC 528 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DC 12 N4 ? ? A DG 401 D DC 528 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 D DG 11 N1 ? ? A DC 402 D DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 D DG 11 O6 ? ? A DC 402 D DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 D DG 11 N2 ? ? A DC 402 D DG 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 D DC 10 N3 ? ? A DG 403 D DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DC 10 O2 ? ? A DG 403 D DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 D DC 10 N4 ? ? A DG 403 D DC 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 D DG 9 N1 ? ? A DC 404 D DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 D DG 9 O6 ? ? A DC 404 D DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 D DG 9 N2 ? ? A DC 404 D DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DT 7 N3 ? ? ? 1_555 D DA 8 N1 ? ? A DT 405 D DA 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DT 7 O4 ? ? ? 1_555 D DA 8 N6 ? ? A DT 405 D DA 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 8 N1 ? ? ? 1_555 D DC 7 N3 ? ? A DG 406 D DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 D DC 7 O2 ? ? A DG 406 D DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 8 O6 ? ? ? 1_555 D DC 7 N4 ? ? A DG 406 D DC 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DA 9 N1 ? ? ? 1_555 D DT 6 N3 ? ? A DA 407 D DT 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DA 9 N6 ? ? ? 1_555 D DT 6 O4 ? ? A DA 407 D DT 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 D DC 5 N3 ? ? A DG 408 D DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 D DC 5 O2 ? ? A DG 408 D DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 D DC 5 N4 ? ? A DG 408 D DC 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DG 11 N1 ? ? ? 1_555 D DC 4 N3 ? ? A DG 409 D DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DG 11 N2 ? ? ? 1_555 D DC 4 O2 ? ? A DG 409 D DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DG 11 O6 ? ? ? 1_555 D DC 4 N4 ? ? A DG 409 D DC 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DA 12 N1 ? ? ? 1_555 D DT 3 N3 ? ? A DA 410 D DT 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A DA 12 N6 ? ? ? 1_555 D DT 3 O4 ? ? A DA 410 D DT 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A DG 13 N1 ? ? ? 1_555 D DC 2 N3 ? ? A DG 411 D DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A DG 13 N2 ? ? ? 1_555 D DC 2 O2 ? ? A DG 411 D DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A DG 13 O6 ? ? ? 1_555 D DC 2 N4 ? ? A DG 411 D DC 518 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A DG 14 N1 ? ? ? 1_555 D DC 1 N3 ? ? A DG 412 D DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A DG 14 N2 ? ? ? 1_555 D DC 1 O2 ? ? A DG 412 D DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A DG 14 O6 ? ? ? 1_555 D DC 1 N4 ? ? A DG 412 D DC 517 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A DT 15 N3 ? ? ? 1_555 C DA 16 N1 ? ? A DT 413 C DA 516 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A DT 15 O4 ? ? ? 1_555 C DA 16 N6 ? ? A DT 413 C DA 516 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A DT 16 N3 ? ? ? 1_555 C DA 15 N1 ? ? A DT 414 C DA 515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A DT 16 O4 ? ? ? 1_555 C DA 15 N6 ? ? A DT 414 C DA 515 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A DT 17 N3 ? ? ? 1_555 C DA 14 N1 ? ? A DT 415 C DA 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A DT 17 O4 ? ? ? 1_555 C DA 14 N6 ? ? A DT 415 C DA 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A DC 18 N3 ? ? ? 1_555 C DG 13 N1 ? ? A DC 416 C DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A DC 18 N4 ? ? ? 1_555 C DG 13 O6 ? ? A DC 416 C DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A DC 18 O2 ? ? ? 1_555 C DG 13 N2 ? ? A DC 416 C DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 417 C DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 417 C DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 418 C DG 511 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog52 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 419 C DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 419 C DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 420 C DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 420 C DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 420 C DC 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 421 C DA 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 421 C DA 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 422 C DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 422 C DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 423 C DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 423 C DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 424 C DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 424 C DT 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 425 C DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 425 C DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 425 C DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 426 C DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 426 C DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 426 C DG 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 427 C DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 427 C DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 427 C DC 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 428 C DG 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 428 C DG 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 428 C DG 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY E 17 ? LYS E 24 ? GLY Z 17 LYS Z 24 A 2 TYR E 27 ? SER E 37 ? TYR Z 27 SER Z 37 A 3 MSE E 66 ? ILE E 71 ? MSE Z 66 ILE Z 71 A 4 ILE E 55 ? ARG E 59 ? ILE Z 55 ARG Z 59 B 1 CYS E 150 ? SER E 152 ? CYS Z 150 SER Z 152 B 2 SER E 166 ? ARG E 172 ? SER Z 166 ARG Z 172 B 3 CYS E 198 ? VAL E 203 ? CYS Z 198 VAL Z 203 B 4 TYR E 192 ? LEU E 193 ? TYR Z 192 LEU Z 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS E 24 ? N LYS Z 24 O TYR E 27 ? O TYR Z 27 A 2 3 N LEU E 36 ? N LEU Z 36 O VAL E 67 ? O VAL Z 67 A 3 4 O ARG E 70 ? O ARG Z 70 N ILE E 55 ? N ILE Z 55 B 1 2 N CYS E 150 ? N CYS Z 150 O ASP E 168 ? O ASP Z 168 B 2 3 N ILE E 169 ? N ILE Z 169 O LEU E 201 ? O LEU Z 201 B 3 4 O LYS E 200 ? O LYS Z 200 N TYR E 192 ? N TYR Z 192 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG Z 601' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG B 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DC A 18 ? DC A 416 . ? 1_555 ? 2 AC1 4 DC D 1 ? DC D 517 . ? 1_555 ? 3 AC1 4 GLY E 15 ? GLY Z 15 . ? 1_555 ? 4 AC1 4 GLU E 148 ? GLU Z 148 . ? 1_555 ? 5 AC2 5 DT B 1 ? DT B 417 . ? 1_555 ? 6 AC2 5 DA C 16 ? DA C 516 . ? 1_555 ? 7 AC2 5 ASP E 16 ? ASP Z 16 . ? 1_555 ? 8 AC2 5 GLU E 146 ? GLU Z 146 . ? 1_555 ? 9 AC2 5 ALA E 147 ? ALA Z 147 . ? 1_555 ? # _database_PDB_matrix.entry_id 1P8K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1P8K _atom_sites.fract_transf_matrix[1][1] 0.016539 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005441 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013729 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016138 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 399 399 DG GUA A . n A 1 2 DC 2 400 400 DC CYT A . n A 1 3 DG 3 401 401 DG GUA A . n A 1 4 DC 4 402 402 DC CYT A . n A 1 5 DG 5 403 403 DG GUA A . n A 1 6 DC 6 404 404 DC CYT A . n A 1 7 DT 7 405 405 DT THY A . n A 1 8 DG 8 406 406 DG GUA A . n A 1 9 DA 9 407 407 DA ADE A . n A 1 10 DG 10 408 408 DG GUA A . n A 1 11 DG 11 409 409 DG GUA A . n A 1 12 DA 12 410 410 DA ADE A . n A 1 13 DG 13 411 411 DG GUA A . n A 1 14 DG 14 412 412 DG GUA A . n A 1 15 DT 15 413 413 DT THY A . n A 1 16 DT 16 414 414 DT THY A . n A 1 17 DT 17 415 415 DT THY A . n A 1 18 DC 18 416 416 DC CYT A . n B 2 1 DT 1 417 417 DT THY B . n B 2 2 DC 2 418 418 DC CYT B . n B 2 3 DT 3 419 419 DT THY B . n B 2 4 DG 4 420 420 DG GUA B . n B 2 5 DT 5 421 421 DT THY B . n B 2 6 DA 6 422 422 DA ADE B . n B 2 7 DA 7 423 423 DA ADE B . n B 2 8 DA 8 424 424 DA ADE B . n B 2 9 DG 9 425 425 DG GUA B . n B 2 10 DC 10 426 426 DC CYT B . n B 2 11 DG 11 427 427 DG GUA B . n B 2 12 DC 12 428 428 DC CYT B . n B 2 13 DA 13 429 429 DA ADE B . n C 3 1 DG 1 501 501 DG GUA C . n C 3 2 DC 2 502 502 DC CYT C . n C 3 3 DG 3 503 503 DG GUA C . n C 3 4 DC 4 504 504 DC CYT C . n C 3 5 DT 5 505 505 DT THY C . n C 3 6 DT 6 506 506 DT THY C . n C 3 7 DT 7 507 507 DT THY C . n C 3 8 DA 8 508 508 DA ADE C . n C 3 9 DC 9 509 509 DC CYT C . n C 3 10 DA 10 510 510 DA ADE C . n C 3 11 DG 11 511 511 DG GUA C . n C 3 12 DA 12 512 512 DA ADE C . n C 3 13 DG 13 513 513 DG GUA C . n C 3 14 DA 14 514 514 DA ADE C . n C 3 15 DA 15 515 515 DA ADE C . n C 3 16 DA 16 516 516 DA ADE C . n D 4 1 DC 1 517 517 DC CYT D . n D 4 2 DC 2 518 518 DC CYT D . n D 4 3 DT 3 519 519 DT THY D . n D 4 4 DC 4 520 520 DC CYT D . n D 4 5 DC 5 521 521 DC CYT D . n D 4 6 DT 6 522 522 DT THY D . n D 4 7 DC 7 523 523 DC CYT D . n D 4 8 DA 8 524 524 DA ADE D . n D 4 9 DG 9 525 525 DG GUA D . n D 4 10 DC 10 526 526 DC CYT D . n D 4 11 DG 11 527 527 DG GUA D . n D 4 12 DC 12 528 528 DC CYT D . n D 4 13 DG 13 529 529 DG GUA D . n D 4 14 DC 14 530 530 DC CYT D . n D 4 15 DT 15 531 531 DT THY D . n E 5 1 GLY 1 1 1 GLY GLY Z . n E 5 2 SER 2 2 2 SER SER Z . n E 5 3 ASP 3 3 3 ASP ASP Z . n E 5 4 LEU 4 4 4 LEU LEU Z . n E 5 5 THR 5 5 5 THR THR Z . n E 5 6 TYR 6 6 6 TYR TYR Z . n E 5 7 ALA 7 7 7 ALA ALA Z . n E 5 8 TYR 8 8 8 TYR TYR Z . n E 5 9 LEU 9 9 9 LEU LEU Z . n E 5 10 VAL 10 10 10 VAL VAL Z . n E 5 11 GLY 11 11 11 GLY GLY Z . n E 5 12 LEU 12 12 12 LEU LEU Z . n E 5 13 PHE 13 13 13 PHE PHE Z . n E 5 14 GLU 14 14 14 GLU GLU Z . n E 5 15 GLY 15 15 15 GLY GLY Z . n E 5 16 ASP 16 16 16 ASP ASP Z . n E 5 17 GLY 17 17 17 GLY GLY Z . n E 5 18 TYR 18 18 18 TYR TYR Z . n E 5 19 PHE 19 19 19 PHE PHE Z . n E 5 20 SER 20 20 20 SER SER Z . n E 5 21 ILE 21 21 21 ILE ILE Z . n E 5 22 THR 22 22 22 THR THR Z . n E 5 23 LYS 23 23 23 LYS LYS Z . n E 5 24 LYS 24 24 24 LYS LYS Z . n E 5 25 GLY 25 25 25 GLY GLY Z . n E 5 26 LYS 26 26 26 LYS LYS Z . n E 5 27 TYR 27 27 27 TYR TYR Z . n E 5 28 LEU 28 28 28 LEU LEU Z . n E 5 29 THR 29 29 29 THR THR Z . n E 5 30 TYR 30 30 30 TYR TYR Z . n E 5 31 GLU 31 31 31 GLU GLU Z . n E 5 32 LEU 32 32 32 LEU LEU Z . n E 5 33 GLY 33 33 33 GLY GLY Z . n E 5 34 ILE 34 34 34 ILE ILE Z . n E 5 35 GLU 35 35 35 GLU GLU Z . n E 5 36 LEU 36 36 36 LEU LEU Z . n E 5 37 SER 37 37 37 SER SER Z . n E 5 38 ILE 38 38 38 ILE ILE Z . n E 5 39 LYS 39 39 39 LYS LYS Z . n E 5 40 ASP 40 40 40 ASP ASP Z . n E 5 41 VAL 41 41 41 VAL VAL Z . n E 5 42 GLN 42 42 42 GLN GLN Z . n E 5 43 LEU 43 43 43 LEU LEU Z . n E 5 44 ILE 44 44 44 ILE ILE Z . n E 5 45 TYR 45 45 45 TYR TYR Z . n E 5 46 LYS 46 46 46 LYS LYS Z . n E 5 47 ILE 47 47 47 ILE ILE Z . n E 5 48 LYS 48 48 48 LYS LYS Z . n E 5 49 LYS 49 49 49 LYS LYS Z . n E 5 50 ILE 50 50 50 ILE ILE Z . n E 5 51 LEU 51 51 51 LEU LEU Z . n E 5 52 GLY 52 52 52 GLY GLY Z . n E 5 53 ILE 53 53 53 ILE ILE Z . n E 5 54 GLY 54 54 54 GLY GLY Z . n E 5 55 ILE 55 55 55 ILE ILE Z . n E 5 56 VAL 56 56 56 VAL VAL Z . n E 5 57 SER 57 57 57 SER SER Z . n E 5 58 PHE 58 58 58 PHE PHE Z . n E 5 59 ARG 59 59 59 ARG ARG Z . n E 5 60 LYS 60 60 60 LYS LYS Z . n E 5 61 ARG 61 61 61 ARG ARG Z . n E 5 62 ASN 62 62 62 ASN ASN Z . n E 5 63 GLU 63 63 63 GLU GLU Z . n E 5 64 ILE 64 64 64 ILE ILE Z . n E 5 65 GLU 65 65 65 GLU GLU Z . n E 5 66 MSE 66 66 66 MSE MSE Z . n E 5 67 VAL 67 67 67 VAL VAL Z . n E 5 68 ALA 68 68 68 ALA ALA Z . n E 5 69 LEU 69 69 69 LEU LEU Z . n E 5 70 ARG 70 70 70 ARG ARG Z . n E 5 71 ILE 71 71 71 ILE ILE Z . n E 5 72 ARG 72 72 72 ARG ARG Z . n E 5 73 ASP 73 73 73 ASP ASP Z . n E 5 74 LYS 74 74 74 LYS LYS Z . n E 5 75 ASN 75 75 75 ASN ASN Z . n E 5 76 HIS 76 76 76 HIS HIS Z . n E 5 77 LEU 77 77 77 LEU LEU Z . n E 5 78 LYS 78 78 78 LYS LYS Z . n E 5 79 SER 79 79 79 SER SER Z . n E 5 80 PHE 80 80 80 PHE PHE Z . n E 5 81 ILE 81 81 81 ILE ILE Z . n E 5 82 LEU 82 82 82 LEU LEU Z . n E 5 83 PRO 83 83 83 PRO PRO Z . n E 5 84 ILE 84 84 84 ILE ILE Z . n E 5 85 PHE 85 85 85 PHE PHE Z . n E 5 86 GLU 86 86 86 GLU GLU Z . n E 5 87 LYS 87 87 87 LYS LYS Z . n E 5 88 TYR 88 88 88 TYR TYR Z . n E 5 89 PRO 89 89 89 PRO PRO Z . n E 5 90 MSE 90 90 90 MSE MSE Z . n E 5 91 PHE 91 91 91 PHE PHE Z . n E 5 92 SER 92 92 92 SER SER Z . n E 5 93 ASN 93 93 93 ASN ASN Z . n E 5 94 LYS 94 94 94 LYS LYS Z . n E 5 95 GLN 95 95 95 GLN GLN Z . n E 5 96 TYR 96 96 96 TYR TYR Z . n E 5 97 ASP 97 97 97 ASP ASP Z . n E 5 98 TYR 98 98 98 TYR TYR Z . n E 5 99 LEU 99 99 99 LEU LEU Z . n E 5 100 ARG 100 100 100 ARG ARG Z . n E 5 101 PHE 101 101 101 PHE PHE Z . n E 5 102 ARG 102 102 102 ARG ARG Z . n E 5 103 ASN 103 103 103 ASN ASN Z . n E 5 104 ALA 104 104 104 ALA ALA Z . n E 5 105 LEU 105 105 105 LEU LEU Z . n E 5 106 LEU 106 106 106 LEU LEU Z . n E 5 107 SER 107 107 107 SER SER Z . n E 5 108 GLY 108 108 108 GLY GLY Z . n E 5 109 ILE 109 109 109 ILE ILE Z . n E 5 110 ILE 110 110 110 ILE ILE Z . n E 5 111 SER 111 111 111 SER SER Z . n E 5 112 LEU 112 112 112 LEU LEU Z . n E 5 113 GLU 113 113 113 GLU GLU Z . n E 5 114 ASP 114 114 114 ASP ASP Z . n E 5 115 LEU 115 115 115 LEU LEU Z . n E 5 116 PRO 116 116 116 PRO PRO Z . n E 5 117 ASP 117 117 117 ASP ASP Z . n E 5 118 TYR 118 118 118 TYR TYR Z . n E 5 119 THR 119 119 119 THR THR Z . n E 5 120 ARG 120 120 120 ARG ARG Z . n E 5 121 SER 121 121 121 SER SER Z . n E 5 122 ASP 122 122 122 ASP ASP Z . n E 5 123 GLU 123 123 123 GLU GLU Z . n E 5 124 PRO 124 124 124 PRO PRO Z . n E 5 125 LEU 125 125 125 LEU LEU Z . n E 5 126 ASN 126 126 126 ASN ASN Z . n E 5 127 SER 127 127 127 SER SER Z . n E 5 128 ILE 128 128 128 ILE ILE Z . n E 5 129 GLU 129 129 129 GLU GLU Z . n E 5 130 SER 130 130 130 SER SER Z . n E 5 131 ILE 131 131 131 ILE ILE Z . n E 5 132 ILE 132 132 132 ILE ILE Z . n E 5 133 ASN 133 133 133 ASN ASN Z . n E 5 134 THR 134 134 134 THR THR Z . n E 5 135 SER 135 135 135 SER SER Z . n E 5 136 TYR 136 136 136 TYR TYR Z . n E 5 137 PHE 137 137 137 PHE PHE Z . n E 5 138 SER 138 138 138 SER SER Z . n E 5 139 ALA 139 139 139 ALA ALA Z . n E 5 140 TRP 140 140 140 TRP TRP Z . n E 5 141 LEU 141 141 141 LEU LEU Z . n E 5 142 VAL 142 142 142 VAL VAL Z . n E 5 143 GLY 143 143 143 GLY GLY Z . n E 5 144 PHE 144 144 144 PHE PHE Z . n E 5 145 ILE 145 145 145 ILE ILE Z . n E 5 146 GLU 146 146 146 GLU GLU Z . n E 5 147 ALA 147 147 147 ALA ALA Z . n E 5 148 GLU 148 148 148 GLU GLU Z . n E 5 149 GLY 149 149 149 GLY GLY Z . n E 5 150 CYS 150 150 150 CYS CYS Z . n E 5 151 PHE 151 151 151 PHE PHE Z . n E 5 152 SER 152 152 152 SER SER Z . n E 5 153 VAL 153 153 153 VAL VAL Z . n E 5 154 TYR 154 154 154 TYR TYR Z . n E 5 155 LYS 155 155 155 LYS LYS Z . n E 5 156 LEU 156 156 156 LEU LEU Z . n E 5 157 ASN 157 157 157 ASN ASN Z . n E 5 158 LYS 158 158 158 LYS LYS Z . n E 5 159 ASP 159 159 159 ASP ASP Z . n E 5 160 ASP 160 160 160 ASP ASP Z . n E 5 161 ASP 161 161 161 ASP ASP Z . n E 5 162 TYR 162 162 162 TYR TYR Z . n E 5 163 LEU 163 163 163 LEU LEU Z . n E 5 164 ILE 164 164 164 ILE ILE Z . n E 5 165 ALA 165 165 165 ALA ALA Z . n E 5 166 SER 166 166 166 SER SER Z . n E 5 167 PHE 167 167 167 PHE PHE Z . n E 5 168 ASP 168 168 168 ASP ASP Z . n E 5 169 ILE 169 169 169 ILE ILE Z . n E 5 170 ALA 170 170 170 ALA ALA Z . n E 5 171 GLN 171 171 171 GLN GLN Z . n E 5 172 ARG 172 172 172 ARG ARG Z . n E 5 173 ASP 173 173 173 ASP ASP Z . n E 5 174 GLY 174 174 174 GLY GLY Z . n E 5 175 ASP 175 175 175 ASP ASP Z . n E 5 176 ILE 176 176 176 ILE ILE Z . n E 5 177 LEU 177 177 177 LEU LEU Z . n E 5 178 ILE 178 178 178 ILE ILE Z . n E 5 179 SER 179 179 179 SER SER Z . n E 5 180 ALA 180 180 180 ALA ALA Z . n E 5 181 ILE 181 181 181 ILE ILE Z . n E 5 182 ARG 182 182 182 ARG ARG Z . n E 5 183 LYS 183 183 183 LYS LYS Z . n E 5 184 TYR 184 184 184 TYR TYR Z . n E 5 185 LEU 185 185 185 LEU LEU Z . n E 5 186 SER 186 186 186 SER SER Z . n E 5 187 PHE 187 187 187 PHE PHE Z . n E 5 188 THR 188 188 188 THR THR Z . n E 5 189 THR 189 189 189 THR THR Z . n E 5 190 LYS 190 190 190 LYS LYS Z . n E 5 191 VAL 191 191 191 VAL VAL Z . n E 5 192 TYR 192 192 192 TYR TYR Z . n E 5 193 LEU 193 193 193 LEU LEU Z . n E 5 194 ASP 194 194 194 ASP ASP Z . n E 5 195 LYS 195 195 195 LYS LYS Z . n E 5 196 THR 196 196 196 THR THR Z . n E 5 197 ASN 197 197 197 ASN ASN Z . n E 5 198 CYS 198 198 198 CYS CYS Z . n E 5 199 SER 199 199 199 SER SER Z . n E 5 200 LYS 200 200 200 LYS LYS Z . n E 5 201 LEU 201 201 201 LEU LEU Z . n E 5 202 LYS 202 202 202 LYS LYS Z . n E 5 203 VAL 203 203 203 VAL VAL Z . n E 5 204 THR 204 204 204 THR THR Z . n E 5 205 SER 205 205 205 SER SER Z . n E 5 206 VAL 206 206 206 VAL VAL Z . n E 5 207 ARG 207 207 207 ARG ARG Z . n E 5 208 SER 208 208 208 SER SER Z . n E 5 209 VAL 209 209 209 VAL VAL Z . n E 5 210 GLU 210 210 210 GLU GLU Z . n E 5 211 ASN 211 211 211 ASN ASN Z . n E 5 212 ILE 212 212 212 ILE ILE Z . n E 5 213 ILE 213 213 213 ILE ILE Z . n E 5 214 LYS 214 214 214 LYS LYS Z . n E 5 215 PHE 215 215 215 PHE PHE Z . n E 5 216 LEU 216 216 216 LEU LEU Z . n E 5 217 GLN 217 217 217 GLN GLN Z . n E 5 218 ASN 218 218 218 ASN ASN Z . n E 5 219 ALA 219 219 219 ALA ALA Z . n E 5 220 PRO 220 220 220 PRO PRO Z . n E 5 221 VAL 221 221 221 VAL VAL Z . n E 5 222 LYS 222 222 222 LYS LYS Z . n E 5 223 LEU 223 223 223 LEU LEU Z . n E 5 224 LEU 224 224 224 LEU LEU Z . n E 5 225 GLY 225 225 225 GLY GLY Z . n E 5 226 ASN 226 226 226 ASN ASN Z . n E 5 227 LYS 227 227 227 LYS LYS Z . n E 5 228 LYS 228 228 228 LYS LYS Z . n E 5 229 LEU 229 229 229 LEU LEU Z . n E 5 230 GLN 230 230 230 GLN GLN Z . n E 5 231 TYR 231 231 231 TYR TYR Z . n E 5 232 LEU 232 232 232 LEU LEU Z . n E 5 233 LEU 233 233 233 LEU LEU Z . n E 5 234 TRP 234 234 234 TRP TRP Z . n E 5 235 LEU 235 235 235 LEU LEU Z . n E 5 236 LYS 236 236 236 LYS LYS Z . n E 5 237 GLN 237 237 237 GLN GLN Z . n E 5 238 LEU 238 238 238 LEU LEU Z . n E 5 239 ARG 239 239 239 ARG ARG Z . n E 5 240 LYS 240 240 240 LYS LYS Z . n E 5 241 ILE 241 241 241 ILE ILE Z . n E 5 242 SER 242 242 242 SER SER Z . n E 5 243 ARG 243 243 243 ARG ARG Z . n E 5 244 TYR 244 244 244 TYR TYR Z . n E 5 245 SER 245 245 245 SER SER Z . n E 5 246 GLU 246 246 246 GLU GLU Z . n E 5 247 LYS 247 247 247 LYS LYS Z . n E 5 248 ILE 248 248 248 ILE ILE Z . n E 5 249 LYS 249 249 249 LYS LYS Z . n E 5 250 ILE 250 250 250 ILE ILE Z . n E 5 251 PRO 251 251 251 PRO PRO Z . n E 5 252 SER 252 252 252 SER SER Z . n E 5 253 ASN 253 253 253 ASN ASN Z . n E 5 254 TYR 254 254 254 TYR TYR Z . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 E MSE 66 Z MSE 66 ? MET SELENOMETHIONINE 2 E MSE 90 Z MSE 90 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DT 1 ? B DT 417 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 O ? E ALA 147 ? Z ALA 147 ? 1_555 48.0 ? 2 OP1 ? B DT 1 ? B DT 417 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OD1 ? E ASP 16 ? Z ASP 16 ? 1_555 63.8 ? 3 O ? E ALA 147 ? Z ALA 147 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OD1 ? E ASP 16 ? Z ASP 16 ? 1_555 71.2 ? 4 OP1 ? B DT 1 ? B DT 417 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP1 ? C DA 16 ? C DA 516 ? 1_555 78.6 ? 5 O ? E ALA 147 ? Z ALA 147 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP1 ? C DA 16 ? C DA 516 ? 1_555 124.3 ? 6 OD1 ? E ASP 16 ? Z ASP 16 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP1 ? C DA 16 ? C DA 516 ? 1_555 71.8 ? 7 OP1 ? B DT 1 ? B DT 417 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP2 ? B DT 1 ? B DT 417 ? 1_555 57.2 ? 8 O ? E ALA 147 ? Z ALA 147 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP2 ? B DT 1 ? B DT 417 ? 1_555 84.7 ? 9 OD1 ? E ASP 16 ? Z ASP 16 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP2 ? B DT 1 ? B DT 417 ? 1_555 117.0 ? 10 OP1 ? C DA 16 ? C DA 516 ? 1_555 MG ? F MG . ? B MG 602 ? 1_555 OP2 ? B DT 1 ? B DT 417 ? 1_555 76.8 ? 11 OE2 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OE1 ? E GLU 148 ? Z GLU 148 ? 1_555 50.2 ? 12 OE2 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 O ? E GLY 15 ? Z GLY 15 ? 1_555 91.0 ? 13 OE1 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 O ? E GLY 15 ? Z GLY 15 ? 1_555 72.0 ? 14 OE2 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP2 ? D DC 1 ? D DC 517 ? 1_555 151.8 ? 15 OE1 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP2 ? D DC 1 ? D DC 517 ? 1_555 124.8 ? 16 O ? E GLY 15 ? Z GLY 15 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP2 ? D DC 1 ? D DC 517 ? 1_555 114.7 ? 17 OE2 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP3 ? D DC 1 ? D DC 517 ? 1_555 130.3 ? 18 OE1 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP3 ? D DC 1 ? D DC 517 ? 1_555 178.3 ? 19 O ? E GLY 15 ? Z GLY 15 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP3 ? D DC 1 ? D DC 517 ? 1_555 106.3 ? 20 OP2 ? D DC 1 ? D DC 517 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP3 ? D DC 1 ? D DC 517 ? 1_555 55.7 ? 21 OE2 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP1 ? A DC 18 ? A DC 416 ? 1_555 73.4 ? 22 OE1 ? E GLU 148 ? Z GLU 148 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP1 ? A DC 18 ? A DC 416 ? 1_555 90.1 ? 23 O ? E GLY 15 ? Z GLY 15 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP1 ? A DC 18 ? A DC 416 ? 1_555 161.4 ? 24 OP2 ? D DC 1 ? D DC 517 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP1 ? A DC 18 ? A DC 416 ? 1_555 79.1 ? 25 OP3 ? D DC 1 ? D DC 517 ? 1_555 MG ? G MG . ? Z MG 601 ? 1_555 OP1 ? A DC 18 ? A DC 416 ? 1_555 91.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-20 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 CNS phasing . ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The author claims that Arg61 is correct. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CD2 Z TYR 231 ? ? O Z TYR 254 ? ? 2.09 2 1 CG1 Z VAL 142 ? ? OH Z TYR 254 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP3 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 399 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N2 _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 DG _pdbx_validate_symm_contact.auth_seq_id_2 501 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_456 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 399 ? ? "O5'" A DG 399 ? ? 1.658 1.593 0.065 0.010 N 2 1 P B DT 417 ? ? "O5'" B DT 417 ? ? 1.654 1.593 0.061 0.010 N 3 1 P C DG 501 ? ? "O5'" C DG 501 ? ? 1.656 1.593 0.063 0.010 N 4 1 P D DC 517 ? ? "O5'" D DC 517 ? ? 1.662 1.593 0.069 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" D DT 531 ? ? "C4'" D DT 531 ? ? "O4'" D DT 531 ? ? 116.42 109.80 6.62 1.10 N 2 1 "O4'" D DT 531 ? ? "C1'" D DT 531 ? ? N1 D DT 531 ? ? 111.41 108.30 3.11 0.30 N 3 1 N Z ARG 61 ? ? CA Z ARG 61 ? ? C Z ARG 61 ? ? 91.97 111.00 -19.03 2.70 N 4 1 N Z ASN 62 ? ? CA Z ASN 62 ? ? C Z ASN 62 ? ? 137.52 111.00 26.52 2.70 N 5 1 C Z ASN 62 ? ? N Z GLU 63 ? ? CA Z GLU 63 ? ? 106.15 121.70 -15.55 2.50 Y 6 1 CB Z LYS 249 ? ? CG Z LYS 249 ? ? CD Z LYS 249 ? ? 91.42 111.60 -20.18 2.60 N 7 1 CB Z ILE 250 ? ? CA Z ILE 250 ? ? C Z ILE 250 ? ? 96.94 111.60 -14.66 2.00 N 8 1 N Z ILE 250 ? ? CA Z ILE 250 ? ? C Z ILE 250 ? ? 133.15 111.00 22.15 2.70 N 9 1 N Z PRO 251 ? ? CA Z PRO 251 ? ? C Z PRO 251 ? ? 140.44 112.10 28.34 2.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR Z 18 ? ? -172.00 143.73 2 1 TYR Z 27 ? ? -112.23 -163.35 3 1 ARG Z 61 ? ? 35.68 76.03 4 1 ASN Z 62 ? ? -24.93 -21.79 5 1 ASN Z 93 ? ? -56.38 6.22 6 1 ILE Z 128 ? ? -9.74 -78.59 7 1 ILE Z 131 ? ? -58.57 -70.94 8 1 ILE Z 132 ? ? -39.73 -28.48 9 1 LYS Z 158 ? ? -45.47 -74.82 10 1 ASP Z 159 ? ? -37.55 -93.96 11 1 ASP Z 161 ? ? -85.83 49.10 12 1 ALA Z 165 ? ? 64.80 90.72 13 1 ILE Z 169 ? ? -171.20 132.59 14 1 ASP Z 173 ? ? 54.03 18.56 15 1 LEU Z 235 ? ? -29.97 -58.84 16 1 ARG Z 243 ? ? -38.35 -36.47 17 1 GLU Z 246 ? ? -69.71 5.55 18 1 ILE Z 250 ? ? -159.57 -59.78 19 1 SER Z 252 ? ? -142.91 -32.44 20 1 ASN Z 253 ? ? 169.36 161.85 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1P8K 'double helix' 1P8K 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 D DC 14 1_555 0.062 -0.215 -0.391 0.236 6.398 -5.769 1 A_DG399:DC530_D A 399 ? D 530 ? 19 1 1 A DC 2 1_555 D DG 13 1_555 -0.010 -0.009 0.314 -6.040 -3.580 4.264 2 A_DC400:DG529_D A 400 ? D 529 ? 19 1 1 A DG 3 1_555 D DC 12 1_555 -0.096 -0.113 -0.112 5.521 -2.740 4.978 3 A_DG401:DC528_D A 401 ? D 528 ? 19 1 1 A DC 4 1_555 D DG 11 1_555 0.077 -0.111 -0.062 -1.902 -3.502 0.704 4 A_DC402:DG527_D A 402 ? D 527 ? 19 1 1 A DG 5 1_555 D DC 10 1_555 -0.067 -0.131 0.001 0.948 -4.089 -0.384 5 A_DG403:DC526_D A 403 ? D 526 ? 19 1 1 A DC 6 1_555 D DG 9 1_555 -0.321 -0.415 -0.120 -1.936 3.877 -3.540 6 A_DC404:DG525_D A 404 ? D 525 ? 19 1 1 A DT 7 1_555 D DA 8 1_555 -0.193 0.120 -0.100 -5.508 -5.074 -3.149 7 A_DT405:DA524_D A 405 ? D 524 ? 20 1 1 A DG 8 1_555 D DC 7 1_555 -0.379 -0.291 -0.254 -2.213 -1.178 -4.989 8 A_DG406:DC523_D A 406 ? D 523 ? 19 1 1 A DA 9 1_555 D DT 6 1_555 0.336 0.102 0.421 6.828 -6.924 -7.215 9 A_DA407:DT522_D A 407 ? D 522 ? 20 1 1 A DG 10 1_555 D DC 5 1_555 -0.298 0.136 0.475 3.798 6.206 3.038 10 A_DG408:DC521_D A 408 ? D 521 ? 19 1 1 A DG 11 1_555 D DC 4 1_555 0.097 0.054 -0.058 1.571 3.942 -0.210 11 A_DG409:DC520_D A 409 ? D 520 ? 19 1 1 A DA 12 1_555 D DT 3 1_555 0.230 -0.265 -0.250 6.703 2.971 2.957 12 A_DA410:DT519_D A 410 ? D 519 ? 20 1 1 A DG 13 1_555 D DC 2 1_555 -0.620 -0.035 -0.578 -2.937 -0.923 3.414 13 A_DG411:DC518_D A 411 ? D 518 ? 19 1 1 A DG 14 1_555 D DC 1 1_555 -0.428 0.125 -0.216 -3.018 -4.497 -3.641 14 A_DG412:DC517_D A 412 ? D 517 ? 19 1 1 A DT 15 1_555 C DA 16 1_555 -0.369 -0.247 0.822 -3.137 -4.900 -1.651 15 A_DT413:DA516_C A 413 ? C 516 ? 20 1 1 A DT 16 1_555 C DA 15 1_555 -0.258 -0.127 0.192 -3.907 -16.568 3.501 16 A_DT414:DA515_C A 414 ? C 515 ? 20 1 1 A DT 17 1_555 C DA 14 1_555 -0.170 0.124 0.427 -14.344 -32.541 -2.636 17 A_DT415:DA514_C A 415 ? C 514 ? 20 1 1 A DC 18 1_555 C DG 13 1_555 0.188 -0.138 0.305 -23.998 -16.042 7.949 18 A_DC416:DG513_C A 416 ? C 513 ? 19 1 1 B DT 1 1_555 C DA 12 1_555 -0.283 -0.064 0.111 -18.082 -19.276 -0.434 19 B_DT417:DA512_C B 417 ? C 512 ? 20 1 1 B DC 2 1_555 C DG 11 1_555 0.150 0.574 -0.128 -6.572 -10.206 11.027 20 B_DC418:DG511_C B 418 ? C 511 ? ? 1 1 B DT 3 1_555 C DA 10 1_555 0.023 -0.180 -0.401 -2.112 8.411 -7.336 21 B_DT419:DA510_C B 419 ? C 510 ? 20 1 1 B DG 4 1_555 C DC 9 1_555 0.583 -0.192 -0.065 -2.616 -7.985 5.378 22 B_DG420:DC509_C B 420 ? C 509 ? 19 1 1 B DT 5 1_555 C DA 8 1_555 -0.142 -0.242 0.400 4.251 -2.006 -6.434 23 B_DT421:DA508_C B 421 ? C 508 ? 20 1 1 B DA 6 1_555 C DT 7 1_555 0.143 -0.101 0.088 2.816 -7.006 0.027 24 B_DA422:DT507_C B 422 ? C 507 ? 20 1 1 B DA 7 1_555 C DT 6 1_555 0.121 0.101 -0.004 -4.873 2.434 -4.240 25 B_DA423:DT506_C B 423 ? C 506 ? 20 1 1 B DA 8 1_555 C DT 5 1_555 0.041 -0.076 0.272 -1.931 -2.912 2.264 26 B_DA424:DT505_C B 424 ? C 505 ? 20 1 1 B DG 9 1_555 C DC 4 1_555 -0.189 0.086 -0.172 -7.818 -5.276 3.136 27 B_DG425:DC504_C B 425 ? C 504 ? 19 1 1 B DC 10 1_555 C DG 3 1_555 0.192 -0.180 -0.122 -4.628 -1.889 -0.940 28 B_DC426:DG503_C B 426 ? C 503 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.122 -0.074 0.292 0.920 -12.989 -5.805 29 B_DG427:DC502_C B 427 ? C 502 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.310 -0.398 -1.009 11.109 -0.408 -0.514 30 B_DC428:DG501_C B 428 ? C 501 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 D DC 14 1_555 A DC 2 1_555 D DG 13 1_555 0.268 -0.667 3.482 -6.421 -2.982 32.055 -0.634 -1.651 3.412 -5.320 11.454 32.807 1 AA_DG399DC400:DG529DC530_DD A 399 ? D 530 ? A 400 ? D 529 ? 1 A DC 2 1_555 D DG 13 1_555 A DG 3 1_555 D DC 12 1_555 -0.357 1.031 3.111 1.599 0.802 33.897 1.644 0.856 3.114 1.374 -2.740 33.943 2 AA_DC400DG401:DC528DG529_DD A 400 ? D 529 ? A 401 ? D 528 ? 1 A DG 3 1_555 D DC 12 1_555 A DC 4 1_555 D DG 11 1_555 -0.229 -0.595 3.401 -0.454 4.804 35.158 -1.700 0.307 3.296 7.907 0.747 35.478 3 AA_DG401DC402:DG527DC528_DD A 401 ? D 528 ? A 402 ? D 527 ? 1 A DC 4 1_555 D DG 11 1_555 A DG 5 1_555 D DC 10 1_555 0.087 0.475 3.245 -0.035 9.252 35.804 -0.513 -0.142 3.263 14.748 0.056 36.942 4 AA_DC402DG403:DC526DG527_DD A 402 ? D 527 ? A 403 ? D 526 ? 1 A DG 5 1_555 D DC 10 1_555 A DC 6 1_555 D DG 9 1_555 0.753 -0.397 3.387 3.336 4.252 30.023 -1.635 -0.740 3.362 8.125 -6.374 30.494 5 AA_DG403DC404:DG525DC526_DD A 403 ? D 526 ? A 404 ? D 525 ? 1 A DC 6 1_555 D DG 9 1_555 A DT 7 1_555 D DA 8 1_555 -0.526 -1.265 3.478 2.806 4.021 28.252 -3.488 1.715 3.204 8.160 -5.693 28.666 6 AA_DC404DT405:DA524DG525_DD A 404 ? D 525 ? A 405 ? D 524 ? 1 A DT 7 1_555 D DA 8 1_555 A DG 8 1_555 D DC 7 1_555 0.469 1.004 3.313 3.256 7.120 36.537 0.583 -0.282 3.469 11.199 -5.121 37.339 7 AA_DT405DG406:DC523DA524_DD A 405 ? D 524 ? A 406 ? D 523 ? 1 A DG 8 1_555 D DC 7 1_555 A DA 9 1_555 D DT 6 1_555 -1.076 0.511 3.222 -6.667 0.562 39.427 0.682 0.797 3.359 0.825 9.797 39.969 8 AA_DG406DA407:DT522DC523_DD A 406 ? D 523 ? A 407 ? D 522 ? 1 A DA 9 1_555 D DT 6 1_555 A DG 10 1_555 D DC 5 1_555 1.156 -0.670 3.373 -1.515 -6.491 31.567 -0.001 -2.362 3.382 -11.768 2.747 32.246 9 AA_DA407DG408:DC521DT522_DD A 407 ? D 522 ? A 408 ? D 521 ? 1 A DG 10 1_555 D DC 5 1_555 A DG 11 1_555 D DC 4 1_555 0.737 -1.012 3.456 5.810 0.217 31.801 -1.859 -0.218 3.525 0.392 -10.493 32.314 10 AA_DG408DG409:DC520DC521_DD A 408 ? D 521 ? A 409 ? D 520 ? 1 A DG 11 1_555 D DC 4 1_555 A DA 12 1_555 D DT 3 1_555 0.822 -1.095 3.171 4.225 8.869 27.285 -4.027 -0.767 2.779 18.074 -8.610 28.968 11 AA_DG409DA410:DT519DC520_DD A 409 ? D 520 ? A 410 ? D 519 ? 1 A DA 12 1_555 D DT 3 1_555 A DG 13 1_555 D DC 2 1_555 -0.970 -0.838 3.546 0.111 2.108 33.833 -1.802 1.684 3.486 3.617 -0.191 33.897 12 AA_DA410DG411:DC518DT519_DD A 410 ? D 519 ? A 411 ? D 518 ? 1 A DG 13 1_555 D DC 2 1_555 A DG 14 1_555 D DC 1 1_555 -0.401 -1.384 3.424 -5.997 4.618 31.519 -3.318 -0.369 3.214 8.352 10.845 32.393 13 AA_DG411DG412:DC517DC518_DD A 411 ? D 518 ? A 412 ? D 517 ? 1 A DG 14 1_555 D DC 1 1_555 A DT 15 1_555 C DA 16 1_555 -0.227 -0.986 3.349 -10.049 -2.015 35.118 -1.283 -1.085 3.336 -3.255 16.232 36.537 14 AA_DG412DT413:DA516DC517_CD A 412 ? D 517 ? A 413 ? C 516 ? 1 A DT 15 1_555 C DA 16 1_555 A DT 16 1_555 C DA 15 1_555 -0.454 -0.990 3.245 5.442 -4.475 30.960 -0.986 1.833 3.228 -8.249 -10.032 31.732 15 AA_DT413DT414:DA515DA516_CC A 413 ? C 516 ? A 414 ? C 515 ? 1 A DT 16 1_555 C DA 15 1_555 A DT 17 1_555 C DA 14 1_555 -1.444 1.372 3.705 -5.251 -17.965 48.233 2.914 1.270 3.171 -21.084 6.162 51.534 16 AA_DT414DT415:DA514DA515_CC A 414 ? C 515 ? A 415 ? C 514 ? 1 A DT 17 1_555 C DA 14 1_555 A DC 18 1_555 C DG 13 1_555 1.079 1.501 3.597 -1.401 -8.598 44.025 2.791 -1.549 3.229 -11.338 1.848 44.837 17 AA_DT415DC416:DG513DA514_CC A 415 ? C 514 ? A 416 ? C 513 ? 1 A DC 18 1_555 C DG 13 1_555 B DT 1 1_555 C DA 12 1_555 -1.113 0.819 3.262 -0.821 -2.718 31.863 1.973 1.872 3.210 -4.939 1.493 31.986 18 AB_DC416DT417:DA512DG513_CC A 416 ? C 513 ? B 417 ? C 512 ? 1 B DT 1 1_555 C DA 12 1_555 B DC 2 1_555 C DG 11 1_555 1.333 0.400 3.108 3.775 2.984 35.655 0.232 -1.634 3.249 4.846 -6.130 35.967 19 BB_DT417DC418:DG511DA512_CC B 417 ? C 512 ? B 418 ? C 511 ? 1 B DC 2 1_555 C DG 11 1_555 B DT 3 1_555 C DA 10 1_555 0.584 0.316 3.236 5.344 1.419 34.416 0.312 -0.160 3.297 2.379 -8.960 34.844 20 BB_DC418DT419:DA510DG511_CC B 418 ? C 511 ? B 419 ? C 510 ? 1 B DT 3 1_555 C DA 10 1_555 B DG 4 1_555 C DC 9 1_555 0.632 -1.222 3.494 -0.056 7.268 24.586 -4.845 -1.441 3.013 16.610 0.128 25.622 21 BB_DT419DG420:DC509DA510_CC B 419 ? C 510 ? B 420 ? C 509 ? 1 B DG 4 1_555 C DC 9 1_555 B DT 5 1_555 C DA 8 1_555 -1.162 -0.572 3.137 -4.208 2.756 29.890 -1.637 1.395 3.202 5.296 8.086 30.301 22 BB_DG420DT421:DA508DC509_CC B 420 ? C 509 ? B 421 ? C 508 ? 1 B DT 5 1_555 C DA 8 1_555 B DA 6 1_555 C DT 7 1_555 0.678 0.650 3.196 4.719 0.644 40.709 0.860 -0.458 3.261 0.922 -6.755 40.975 23 BB_DT421DA422:DT507DA508_CC B 421 ? C 508 ? B 422 ? C 507 ? 1 B DA 6 1_555 C DT 7 1_555 B DA 7 1_555 C DT 6 1_555 0.092 -1.349 3.588 -2.895 0.425 28.940 -2.788 -0.877 3.543 0.848 5.774 29.084 24 BB_DA422DA423:DT506DT507_CC B 422 ? C 507 ? B 423 ? C 506 ? 1 B DA 7 1_555 C DT 6 1_555 B DA 8 1_555 C DT 5 1_555 0.360 -0.734 3.108 -4.128 -5.446 32.146 -0.399 -1.317 3.118 -9.699 7.351 32.846 25 BB_DA423DA424:DT505DT506_CC B 423 ? C 506 ? B 424 ? C 505 ? 1 B DA 8 1_555 C DT 5 1_555 B DG 9 1_555 C DC 4 1_555 -0.906 -0.880 3.332 -0.166 2.693 37.278 -1.731 1.392 3.267 4.206 0.259 37.372 26 BB_DA424DG425:DC504DT505_CC B 424 ? C 505 ? B 425 ? C 504 ? 1 B DG 9 1_555 C DC 4 1_555 B DC 10 1_555 C DG 3 1_555 -0.577 -0.535 3.278 -1.747 4.807 32.825 -1.739 0.718 3.195 8.442 3.068 33.210 27 BB_DG425DC426:DG503DC504_CC B 425 ? C 504 ? B 426 ? C 503 ? 1 B DC 10 1_555 C DG 3 1_555 B DG 11 1_555 C DC 2 1_555 0.101 0.416 3.127 -5.687 5.725 34.315 -0.134 -0.983 3.098 9.540 9.477 35.223 28 BB_DC426DG427:DC502DG503_CC B 426 ? C 503 ? B 427 ? C 502 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 0.505 0.808 3.011 11.652 -5.718 37.725 1.801 0.512 2.890 -8.540 -17.401 39.819 29 BB_DG427DC428:DG501DC502_CC B 427 ? C 502 ? B 428 ? C 501 ? # _pdbx_entity_nonpoly.entity_id 6 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 MG 1 602 602 MG MG B . G 6 MG 1 601 601 MG MG Z . #