HEADER LIGASE 07-MAY-03 1P8L TITLE NEW CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PBCV-1 DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 10506; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ODELL,L.MALININA,M.TEPLOVA,S.SHUMAN REVDAT 5 06-NOV-24 1P8L 1 REMARK REVDAT 4 16-AUG-23 1P8L 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1P8L 1 VERSN REVDAT 2 24-FEB-09 1P8L 1 VERSN REVDAT 1 26-AUG-03 1P8L 0 JRNL AUTH M.ODELL,L.MALININA,V.SRISKANDA,M.TEPLOVA,S.SHUMAN JRNL TITL ANALYSIS OF THE DNA JOINING REPERTOIRE OF CHLORELLA VIRUS JRNL TITL 2 DNA LIGASE AND A NEW CRYSTAL STRUCTURE OF THE JRNL TITL 3 LIGASE-ADENYLATE INTERMEDIATE JRNL REF NUCLEIC ACIDS RES. V. 31 5090 2003 JRNL REFN ISSN 0305-1048 JRNL PMID 12930960 JRNL DOI 10.1093/NAR/GKG665 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.06 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 7585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 529 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4050 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.92000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -5.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.507 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.560 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2300 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3099 ; 1.575 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 7.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;38.004 ;24.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;23.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.840 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1708 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1044 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.289 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 0.414 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2226 ; 0.777 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 929 ; 1.153 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 873 ; 1.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 188 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : A 215 A 217 REMARK 3 RESIDUE RANGE : A 311 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4950 24.2870 16.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.7539 REMARK 3 T33: 1.2859 T12: 0.3207 REMARK 3 T13: -0.1545 T23: -0.2123 REMARK 3 L TENSOR REMARK 3 L11: 6.0108 L22: 6.4808 REMARK 3 L33: 5.4027 L12: -1.5044 REMARK 3 L13: 0.7806 L23: -2.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.8240 S12: -1.1999 S13: 0.5272 REMARK 3 S21: -0.1165 S22: 0.6578 S23: 0.3541 REMARK 3 S31: -0.1738 S32: -0.0729 S33: 0.1662 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 206 REMARK 3 RESIDUE RANGE : A 230 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0980 8.5120 21.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.9925 REMARK 3 T33: 1.2510 T12: 0.4999 REMARK 3 T13: -0.2999 T23: -0.2886 REMARK 3 L TENSOR REMARK 3 L11: 14.3359 L22: 12.4733 REMARK 3 L33: 2.1521 L12: -0.0653 REMARK 3 L13: 1.5716 L23: 2.8119 REMARK 3 S TENSOR REMARK 3 S11: -1.4240 S12: -2.5066 S13: 1.3985 REMARK 3 S21: 0.2895 S22: 1.3903 S23: -1.1622 REMARK 3 S31: -0.4620 S32: 0.2360 S33: 0.0337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-6% PEG 4000, 50 MM HEPES, 50 MM REMARK 280 SODIUM ACETATE, PH 7.5, HANGING DROPS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.52950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.28700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.52950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.28700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 207 REMARK 465 ASN A 208 REMARK 465 THR A 209 REMARK 465 LYS A 210 REMARK 465 THR A 211 REMARK 465 LYS A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 SER A 218 REMARK 465 LYS A 219 REMARK 465 ARG A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 LYS A 224 REMARK 465 SER A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 VAL A 228 REMARK 465 GLU A 229 REMARK 465 ARG A 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 87 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 65 OH TYR A 172 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 282 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 39.75 -71.62 REMARK 500 PHE A 20 -143.43 -84.81 REMARK 500 PRO A 21 57.18 -13.12 REMARK 500 ASP A 29 69.32 -105.81 REMARK 500 THR A 37 -79.57 51.70 REMARK 500 GLN A 38 -168.50 -100.74 REMARK 500 THR A 57 -29.59 -37.84 REMARK 500 LEU A 59 -65.79 -100.12 REMARK 500 ASN A 90 3.74 -153.04 REMARK 500 THR A 102 -67.76 69.85 REMARK 500 ASP A 103 -94.90 -158.97 REMARK 500 ILE A 126 -38.69 -26.08 REMARK 500 ILE A 183 -71.41 -71.93 REMARK 500 ILE A 198 -29.40 -151.13 REMARK 500 LEU A 203 -78.22 -53.15 REMARK 500 PHE A 204 94.55 158.65 REMARK 500 ASP A 239 -89.45 -74.14 REMARK 500 TYR A 240 101.92 58.03 REMARK 500 ASP A 241 92.23 13.11 REMARK 500 ALA A 253 -9.95 -59.93 REMARK 500 MET A 278 -125.69 -88.70 REMARK 500 SER A 280 65.74 -64.44 REMARK 500 CYS A 283 97.90 -178.23 REMARK 500 PHE A 286 93.14 16.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 20 PRO A 21 -132.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 DBREF 1P8L A 1 298 UNP O41026 O41026_CHVP1 1 298 SEQADV 1P8L HIS A -5 UNP O41026 EXPRESSION TAG SEQADV 1P8L HIS A -4 UNP O41026 EXPRESSION TAG SEQADV 1P8L HIS A -3 UNP O41026 EXPRESSION TAG SEQADV 1P8L HIS A -2 UNP O41026 EXPRESSION TAG SEQADV 1P8L HIS A -1 UNP O41026 EXPRESSION TAG SEQADV 1P8L HIS A 0 UNP O41026 EXPRESSION TAG SEQRES 1 A 304 HIS HIS HIS HIS HIS HIS MET ALA ILE THR LYS PRO LEU SEQRES 2 A 304 LEU ALA ALA THR LEU GLU ASN ILE GLU ASP VAL GLN PHE SEQRES 3 A 304 PRO CYS LEU ALA THR PRO LYS ILE ASP GLY ILE ARG SER SEQRES 4 A 304 VAL LYS GLN THR GLN MET LEU SER ARG THR PHE LYS PRO SEQRES 5 A 304 ILE ARG ASN SER VAL MET ASN ARG LEU LEU THR GLU LEU SEQRES 6 A 304 LEU PRO GLU GLY SER ASP GLY GLU ILE SER ILE GLU GLY SEQRES 7 A 304 ALA THR PHE GLN ASP THR THR SER ALA VAL MET THR GLY SEQRES 8 A 304 HIS LYS MET TYR ASN ALA LYS PHE SER TYR TYR TRP PHE SEQRES 9 A 304 ASP TYR VAL THR ASP ASP PRO LEU LYS LYS TYR ILE ASP SEQRES 10 A 304 ARG VAL GLU ASP MET LYS ASN TYR ILE THR VAL HIS PRO SEQRES 11 A 304 HIS ILE LEU GLU HIS ALA GLN VAL LYS ILE ILE PRO LEU SEQRES 12 A 304 ILE PRO VAL GLU ILE ASN ASN ILE THR GLU LEU LEU GLN SEQRES 13 A 304 TYR GLU ARG ASP VAL LEU SER LYS GLY PHE GLU GLY VAL SEQRES 14 A 304 MET ILE ARG LYS PRO ASP GLY LYS TYR LYS PHE GLY ARG SEQRES 15 A 304 SER THR LEU LYS GLU GLY ILE LEU LEU LYS MET LYS GLN SEQRES 16 A 304 PHE LYS ASP ALA GLU ALA THR ILE ILE SER MET THR ALA SEQRES 17 A 304 LEU PHE LYS ASN THR ASN THR LYS THR LYS ASP ASN PHE SEQRES 18 A 304 GLY TYR SER LYS ARG SER THR HIS LYS SER GLY LYS VAL SEQRES 19 A 304 GLU GLU ASP VAL MET GLY SER ILE GLU VAL ASP TYR ASP SEQRES 20 A 304 GLY VAL VAL PHE SER ILE GLY THR GLY PHE ASP ALA ASP SEQRES 21 A 304 GLN ARG ARG ASP PHE TRP GLN ASN LYS GLU SER TYR ILE SEQRES 22 A 304 GLY LYS MET VAL LYS PHE LYS TYR PHE GLU MET GLY SER SEQRES 23 A 304 LYS ASP CYS PRO ARG PHE PRO VAL PHE ILE GLY ILE ARG SEQRES 24 A 304 HIS GLU GLU ASP ARG HET AMP A 301 22 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *2(H2 O) HELIX 1 1 ASN A 49 LEU A 60 1 12 HELIX 2 2 GLN A 76 MET A 83 1 8 HELIX 3 3 LYS A 108 HIS A 123 1 16 HELIX 4 4 PRO A 124 GLU A 128 5 5 HELIX 5 5 ASN A 144 LYS A 158 1 15 HELIX 6 6 GLN A 255 TRP A 260 1 6 SHEET 1 A 5 ALA A 10 THR A 11 0 SHEET 2 A 5 LEU A 185 MET A 187 1 O LYS A 186 N ALA A 10 SHEET 3 A 5 VAL A 163 ARG A 166 -1 N ILE A 165 O LEU A 185 SHEET 4 A 5 LEU A 23 PRO A 26 -1 N LEU A 23 O ARG A 166 SHEET 5 A 5 VAL A 140 GLU A 141 -1 O VAL A 140 N ALA A 24 SHEET 1 B 5 MET A 39 LEU A 40 0 SHEET 2 B 5 ILE A 31 LYS A 35 -1 N VAL A 34 O LEU A 40 SHEET 3 B 5 SER A 64 SER A 69 -1 O ILE A 68 N ILE A 31 SHEET 4 B 5 PHE A 93 TYR A 100 -1 O SER A 94 N SER A 69 SHEET 5 B 5 VAL A 132 PRO A 136 1 O LYS A 133 N TYR A 95 SHEET 1 C 5 PHE A 245 ILE A 247 0 SHEET 2 C 5 MET A 233 VAL A 238 -1 N VAL A 238 O PHE A 245 SHEET 3 C 5 LYS A 191 ALA A 202 -1 N THR A 201 O GLY A 234 SHEET 4 C 5 MET A 270 PHE A 276 -1 O PHE A 273 N ALA A 193 SHEET 5 C 5 ARG A 285 ILE A 292 -1 O ILE A 290 N LYS A 272 LINK NZ LYS A 27 P AMP A 301 1555 1555 1.67 SITE 1 AC1 11 THR A 25 PRO A 26 LYS A 27 ILE A 28 SITE 2 AC1 11 ASP A 29 ARG A 32 GLU A 67 PHE A 98 SITE 3 AC1 11 MET A 164 LEU A 184 LYS A 186 CRYST1 91.059 60.574 70.268 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010982 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014231 0.00000