HEADER TRANSCRIPTION 09-MAY-03 1P97 TITLE NMR STRUCTURE OF THE C-TERMINAL PAS DOMAIN OF HIF2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PAS DOMAIN; COMPND 5 SYNONYM: EPAS-1, MEMBER OF PAS PROTEIN 2, MOP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGB1-PARALLEL KEYWDS MIXED ALPHA-BETA FOLD, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.J.ERBEL,P.B.CARD,O.KARAKUZU,R.K.BRUICK,K.H.GARDNER REVDAT 3 23-FEB-22 1P97 1 REMARK SEQADV REVDAT 2 24-FEB-09 1P97 1 VERSN REVDAT 1 13-JAN-04 1P97 0 JRNL AUTH P.J.ERBEL,P.B.CARD,O.KARAKUZU,R.K.BRUICK,K.H.GARDNER JRNL TITL STRUCTURAL BASIS FOR PAS DOMAIN HETERODIMERIZATION IN THE JRNL TITL 2 BASIC HELIX-LOOP-HELIX-PAS TRANSCRIPTION FACTOR JRNL TITL 3 HYPOXIA-INDUCIBLE FACTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 15504 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 14668441 JRNL DOI 10.1073/PNAS.2533374100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P97 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 15 MM - 75 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9MM HIF2A (240-350) U-15N,13C; REMARK 210 50 MM TRIS BUFFER, 15 MM NACL, 5 REMARK 210 MM DTT (PH 7.3); 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 HIS A 12 HA MET A 16 1.30 REMARK 500 OE2 GLU A 51 HZ1 LYS A 55 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 81.90 57.21 REMARK 500 1 SER A 5 155.47 64.42 REMARK 500 1 MET A 14 -85.22 44.59 REMARK 500 1 PHE A 18 114.67 156.26 REMARK 500 1 LEU A 37 92.77 -64.14 REMARK 500 1 TYR A 45 70.10 -68.85 REMARK 500 1 HIS A 46 133.52 74.33 REMARK 500 1 THR A 62 37.13 -147.84 REMARK 500 1 LEU A 96 9.40 57.77 REMARK 500 1 PRO A 98 98.62 -62.69 REMARK 500 1 LEU A 108 -67.67 -90.93 REMARK 500 2 SER A 5 -150.05 -156.02 REMARK 500 2 MET A 16 65.16 63.36 REMARK 500 2 PHE A 18 108.16 157.52 REMARK 500 2 LEU A 37 89.83 -59.16 REMARK 500 2 PHE A 44 -0.66 -151.90 REMARK 500 2 TYR A 45 66.33 -67.82 REMARK 500 2 HIS A 46 103.91 67.17 REMARK 500 2 THR A 62 29.81 -149.73 REMARK 500 2 HIS A 77 31.18 -98.69 REMARK 500 2 LEU A 96 -6.14 63.20 REMARK 500 2 PRO A 98 101.77 -59.20 REMARK 500 3 MET A 14 -78.58 31.83 REMARK 500 3 MET A 16 66.28 62.27 REMARK 500 3 PHE A 18 86.87 146.96 REMARK 500 3 LEU A 37 89.58 -56.87 REMARK 500 3 SER A 40 103.20 -41.66 REMARK 500 3 TYR A 42 -19.83 -49.46 REMARK 500 3 HIS A 46 141.47 77.88 REMARK 500 3 PRO A 98 87.98 -44.40 REMARK 500 3 LEU A 108 -73.25 -92.71 REMARK 500 4 MET A 14 -79.77 39.01 REMARK 500 4 MET A 16 38.72 73.95 REMARK 500 4 PHE A 18 106.46 149.16 REMARK 500 4 LEU A 37 88.95 -59.41 REMARK 500 4 SER A 40 101.75 -39.24 REMARK 500 4 PHE A 44 -2.26 -154.56 REMARK 500 4 TYR A 45 71.32 -68.13 REMARK 500 4 HIS A 46 106.41 69.97 REMARK 500 4 ALA A 75 -160.29 -79.70 REMARK 500 4 PRO A 98 99.01 -64.80 REMARK 500 4 LEU A 108 -67.61 -97.10 REMARK 500 5 ALA A 2 95.25 59.05 REMARK 500 5 ASP A 4 -72.53 -51.45 REMARK 500 5 MET A 14 -93.21 44.79 REMARK 500 5 MET A 16 35.08 71.35 REMARK 500 5 PHE A 18 110.50 155.06 REMARK 500 5 LEU A 37 95.38 -63.36 REMARK 500 5 PHE A 44 -8.84 -154.55 REMARK 500 5 HIS A 46 129.82 76.98 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 91 0.06 SIDE CHAIN REMARK 500 14 TYR A 31 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1P97 A 4 114 UNP Q99814 EPAS1_HUMAN 240 350 SEQADV 1P97 GLY A 1 UNP Q99814 CLONING ARTIFACT SEQADV 1P97 ALA A 2 UNP Q99814 CLONING ARTIFACT SEQADV 1P97 MET A 3 UNP Q99814 CLONING ARTIFACT SEQRES 1 A 114 GLY ALA MET ASP SER LYS THR PHE LEU SER ARG HIS SER SEQRES 2 A 114 MET ASP MET LYS PHE THR TYR CYS ASP ASP ARG ILE THR SEQRES 3 A 114 GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU LEU GLY ARG SEQRES 4 A 114 SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SER GLU ASN SEQRES 5 A 114 MET THR LYS SER HIS GLN ASN LEU CYS THR LYS GLY GLN SEQRES 6 A 114 VAL VAL SER GLY GLN TYR ARG MET LEU ALA LYS HIS GLY SEQRES 7 A 114 GLY TYR VAL TRP LEU GLU THR GLN GLY THR VAL ILE TYR SEQRES 8 A 114 ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE MET CYS VAL SEQRES 9 A 114 ASN TYR VAL LEU SER GLU ILE GLU LYS ASN HELIX 1 1 ARG A 24 ILE A 29 1 6 HELIX 2 2 HIS A 32 LEU A 37 1 6 HELIX 3 3 SER A 40 PHE A 44 5 5 HELIX 4 4 ASP A 49 CYS A 61 1 13 SHEET 1 A 5 TYR A 20 CYS A 21 0 SHEET 2 A 5 LYS A 6 HIS A 12 -1 N ARG A 11 O TYR A 20 SHEET 3 A 5 PRO A 98 GLU A 112 -1 O VAL A 107 N LYS A 6 SHEET 4 A 5 TYR A 80 TYR A 91 -1 N TYR A 80 O GLU A 112 SHEET 5 A 5 GLN A 65 LEU A 74 -1 N MET A 73 O VAL A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1