HEADER RIBOSOME 13-MAY-03 1P9X
TITLE THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM
TITLE 2 DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE
TITLE 3 ANTIBIOTIC
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 23S RIBOSOMAL RNA;
COMPND 3 CHAIN: 0
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS;
SOURCE 3 ORGANISM_TAXID: 1299
KEYWDS RIBOSOMES, TRNA, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT-TUNNEL,
KEYWDS 2 BLOCKAGE, RIBOSOME
EXPDTA X-RAY DIFFRACTION
AUTHOR R.BERISIO,J.HARMS,F.SCHLUENZEN,R.ZARIVACH,H.A.HANSEN,P.FUCINI,
AUTHOR 2 A.YONATH
REVDAT 4 16-AUG-23 1P9X 1 REMARK
REVDAT 3 27-JAN-21 1P9X 1 REMARK HETSYN
REVDAT 2 24-FEB-09 1P9X 1 VERSN
REVDAT 1 05-AUG-03 1P9X 0
JRNL AUTH R.BERISIO,J.HARMS,F.SCHLUENZEN,R.ZARIVACH,H.A.HANSEN,
JRNL AUTH 2 P.FUCINI,A.YONATH
JRNL TITL STRUCTURAL INSIGHT INTO THE ANTIBIOTIC ACTION OF
JRNL TITL 2 TELITHROMYCIN AGAINST RESISTANT MUTANTS
JRNL REF J.BACTERIOL. V. 185 4276 2003
JRNL REFN ISSN 0021-9193
JRNL PMID 12837804
JRNL DOI 10.1128/JB.185.14.4276-4279.2003
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH F.SCHLUNZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ,R.ALBRECHT,
REMARK 1 AUTH 2 A.YONATH,F.FRANCESCHI
REMARK 1 TITL STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE
REMARK 1 TITL 2 PEPTIDYL TRANSFERASE CENTRE IN EUBACTERIA
REMARK 1 REF NATURE V. 413 814 2001
REMARK 1 REFN ISSN 0028-0836
REMARK 1 DOI 10.1038/35101544
REMARK 2
REMARK 2 RESOLUTION. 3.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 245223
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.273
REMARK 3 FREE R VALUE : 0.340
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 9254
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 58759
REMARK 3 HETEROGEN ATOMS : 58
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 39.00
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.04
REMARK 3 ESD FROM SIGMAA (A) : 0.40
REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.05
REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.011
REMARK 3 BOND ANGLES (DEGREES) : 1.700
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1P9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-03.
REMARK 100 THE DEPOSITION ID IS D_1000019191.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-APR-02; NULL
REMARK 200 TEMPERATURE (KELVIN) : 100.0; NULL
REMARK 200 PH : 7.
REMARK 200 NUMBER OF CRYSTALS USED : 10
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y; Y
REMARK 200 RADIATION SOURCE : APS; ESRF
REMARK 200 BEAMLINE : 19-ID; ID14-4
REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033; NULL
REMARK 200 MONOCHROMATOR : SI111; SI311
REMARK 200 OPTICS : NULL; NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD; NULL
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 273922
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 82.7
REMARK 200 DATA REDUNDANCY : 3.400
REMARK 200 R MERGE (I) : 0.18100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46
REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1
REMARK 200 DATA REDUNDANCY IN SHELL : 2.20
REMARK 200 R MERGE FOR SHELL (I) : 0.49300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: CCP4
REMARK 200 STARTING MODEL: PDB ENTRY 1NKW
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7., EVAPORATION, TEMPERATURE 273K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 85.00000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 207.25000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 346.50000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 85.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 207.25000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 346.50000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 85.00000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 207.25000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 346.50000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 85.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 207.25000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 346.50000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 A 0 249
REMARK 465 C 0 250
REMARK 465 C 0 251
REMARK 465 G 0 252
REMARK 465 A 0 253
REMARK 465 A 0 254
REMARK 465 A 0 255
REMARK 465 C 0 256
REMARK 465 G 0 257
REMARK 465 C 0 258
REMARK 465 U 0 259
REMARK 465 U 0 260
REMARK 465 G 0 261
REMARK 465 C 0 262
REMARK 465 G 0 263
REMARK 465 U 0 264
REMARK 465 U 0 265
REMARK 465 U 0 266
REMARK 465 C 0 267
REMARK 465 G 0 268
REMARK 465 G 0 269
REMARK 465 G 0 270
REMARK 465 G 0 271
REMARK 465 U 0 272
REMARK 465 U 0 273
REMARK 465 G 0 274
REMARK 465 U 0 275
REMARK 465 A 0 276
REMARK 465 G 0 277
REMARK 465 G 0 278
REMARK 465 A 0 279
REMARK 465 C 0 280
REMARK 465 C 0 281
REMARK 465 A 0 282
REMARK 465 G 0 283
REMARK 465 U 0 284
REMARK 465 U 0 285
REMARK 465 U 0 286
REMARK 465 U 0 287
REMARK 465 U 0 288
REMARK 465 A 0 289
REMARK 465 A 0 290
REMARK 465 G 0 291
REMARK 465 C 0 374
REMARK 465 U 0 375
REMARK 465 G 0 376
REMARK 465 G 0 377
REMARK 465 C 0 378
REMARK 465 A 0 379
REMARK 465 C 0 380
REMARK 465 C 0 381
REMARK 465 U 0 382
REMARK 465 G 0 383
REMARK 465 A 0 384
REMARK 465 G 0 385
REMARK 465 U 0 386
REMARK 465 A 0 404
REMARK 465 C 0 405
REMARK 465 G 0 406
REMARK 465 A 0 407
REMARK 465 U 0 408
REMARK 465 G 0 409
REMARK 465 A 0 410
REMARK 465 C 0 411
REMARK 465 U 0 412
REMARK 465 G 0 413
REMARK 465 A 0 414
REMARK 465 A 0 415
REMARK 465 U 0 416
REMARK 465 C 0 417
REMARK 465 C 0 418
REMARK 465 G 0 419
REMARK 465 C 0 420
REMARK 465 G 0 421
REMARK 465 C 0 422
REMARK 465 G 0 423
REMARK 465 G 0 424
REMARK 465 A 0 425
REMARK 465 C 0 426
REMARK 465 C 0 427
REMARK 465 A 0 428
REMARK 465 C 0 429
REMARK 465 G 0 892
REMARK 465 G 0 893
REMARK 465 G 0 894
REMARK 465 G 0 895
REMARK 465 G 0 896
REMARK 465 C 0 897
REMARK 465 C 0 898
REMARK 465 U 0 899
REMARK 465 A 0 900
REMARK 465 C 0 901
REMARK 465 C 0 902
REMARK 465 A 0 903
REMARK 465 G 0 904
REMARK 465 C 0 905
REMARK 465 U 0 906
REMARK 465 U 0 907
REMARK 465 A 0 908
REMARK 465 C 0 909
REMARK 465 C 0 910
REMARK 465 A 0 1275
REMARK 465 G 0 1742
REMARK 465 G 0 2098
REMARK 465 G 0 2099
REMARK 465 A 0 2100
REMARK 465 U 0 2101
REMARK 465 A 0 2102
REMARK 465 C 0 2111
REMARK 465 C 0 2112
REMARK 465 U 0 2113
REMARK 465 G 0 2114
REMARK 465 C 0 2115
REMARK 465 G 0 2116
REMARK 465 U 0 2126
REMARK 465 U 0 2127
REMARK 465 U 0 2128
REMARK 465 U 0 2129
REMARK 465 G 0 2130
REMARK 465 G 0 2131
REMARK 465 A 0 2141
REMARK 465 G 0 2142
REMARK 465 G 0 2143
REMARK 465 C 0 2144
REMARK 465 A 0 2145
REMARK 465 A 0 2146
REMARK 465 C 0 2147
REMARK 465 G 0 2148
REMARK 465 G 0 2149
REMARK 465 U 0 2150
REMARK 465 G 0 2151
REMARK 465 A 0 2152
REMARK 465 A 0 2153
REMARK 465 A 0 2154
REMARK 465 U 0 2155
REMARK 465 A 0 2156
REMARK 465 U 0 2775
REMARK 465 U 0 2776
REMARK 465 A 0 2777
REMARK 465 C 0 2878
REMARK 465 U 0 2879
REMARK 465 C 0 2880
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O2' G 0 588 O2' G 0 2001 2.06
REMARK 500 O2 C 0 700 O3' U 0 800 2.09
REMARK 500 O6 G 0 431 N2 G 0 433 2.15
REMARK 500 O6 G 0 540 OP1 G 0 2006 2.16
REMARK 500 O2' A 0 2043 O4' G 0 2481 2.17
REMARK 500 O2 U 0 873 O5' A 0 2247 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 A 0 762 O3' A 0 763 P -0.097
REMARK 500 G 0 950 C5 G 0 950 C6 0.061
REMARK 500 U 01276 N1 U 01276 C2 0.056
REMARK 500 U 01410 N1 U 01410 C2 0.060
REMARK 500 G 01749 C5' G 01749 C4' -0.047
REMARK 500 U 02493 N1 U 02493 C2 -0.057
REMARK 500 U 02501 C5' U 02501 C4' -0.043
REMARK 500 G 02555 C5 G 02555 C6 -0.062
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 C 0 430 C5' - C4' - O4' ANGL. DEV. = -7.7 DEGREES
REMARK 500 G 0 438 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES
REMARK 500 A 0 763 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES
REMARK 500 A 0 764 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES
REMARK 500 C 0 765 C5' - C4' - O4' ANGL. DEV. = 6.3 DEGREES
REMARK 500 C 0 765 N1 - C1' - C2' ANGL. DEV. = 14.4 DEGREES
REMARK 500 C 0 765 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES
REMARK 500 U 01182 O4' - C1' - N1 ANGL. DEV. = 10.8 DEGREES
REMARK 500 U 01618 C5' - C4' - O4' ANGL. DEV. = -7.7 DEGREES
REMARK 500 G 02001 N9 - C1' - C2' ANGL. DEV. = -10.8 DEGREES
REMARK 500 A 02040 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES
REMARK 500 A 02041 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES
REMARK 500 A 02042 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES
REMARK 500 G 02044 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES
REMARK 500 G 02044 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES
REMARK 500 A 02045 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES
REMARK 500 C 02046 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 G 0 229 0.05 SIDE CHAIN
REMARK 500 G 0 389 0.06 SIDE CHAIN
REMARK 500 G 0 431 0.08 SIDE CHAIN
REMARK 500 G 0 438 0.08 SIDE CHAIN
REMARK 500 A 0 459 0.07 SIDE CHAIN
REMARK 500 C 0 520 0.07 SIDE CHAIN
REMARK 500 U 0 555 0.07 SIDE CHAIN
REMARK 500 U 0 707 0.07 SIDE CHAIN
REMARK 500 G 0 788 0.06 SIDE CHAIN
REMARK 500 A 0 796 0.06 SIDE CHAIN
REMARK 500 C 0 804 0.09 SIDE CHAIN
REMARK 500 G 0 814 0.08 SIDE CHAIN
REMARK 500 U 0 871 0.08 SIDE CHAIN
REMARK 500 U 0 873 0.10 SIDE CHAIN
REMARK 500 A 0 956 0.07 SIDE CHAIN
REMARK 500 G 01036 0.07 SIDE CHAIN
REMARK 500 U 01475 0.06 SIDE CHAIN
REMARK 500 A 01619 0.06 SIDE CHAIN
REMARK 500 A 01632 0.07 SIDE CHAIN
REMARK 500 A 01774 0.06 SIDE CHAIN
REMARK 500 U 02051 0.07 SIDE CHAIN
REMARK 500 U 02439 0.07 SIDE CHAIN
REMARK 500 U 02625 0.07 SIDE CHAIN
REMARK 500 C 02660 0.07 SIDE CHAIN
REMARK 500 U 02700 0.07 SIDE CHAIN
REMARK 500 U 02706 0.08 SIDE CHAIN
REMARK 500 G 02712 0.05 SIDE CHAIN
REMARK 500 G 02762 0.06 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TEL 0 2881
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NKW RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS
REMARK 900 RADIODURANS
REMARK 900 RELATED ID: 1NJM RELATED DB: PDB
REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM/SPARSOMYCIN
REMARK 900 RELATED ID: 1NJN RELATED DB: PDB
REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN
REMARK 900 RELATED ID: 1JZY RELATED DB: PDB
REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN
REMARK 900 RELATED ID: 1JZX RELATED DB: PDB
REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN
REMARK 900 RELATED ID: 1OND RELATED DB: PDB
REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH TROLEANDOMYCIN
DBREF 1P9X 0 1 2880 GB 6460405 AE002087 4635 7514
SEQRES 1 0 2880 G G U C A A G A U A G U A
SEQRES 2 0 2880 A G G G U C C A C G G U G
SEQRES 3 0 2880 G A U G C C C U G G C G C
SEQRES 4 0 2880 U G G A G C C G A U G A A
SEQRES 5 0 2880 G G A C G C G A U U A C C
SEQRES 6 0 2880 U G C G A A A A G C C C C
SEQRES 7 0 2880 G A C G A G C U G G A G A
SEQRES 8 0 2880 U A C G C U U U G A C U C
SEQRES 9 0 2880 G G G G A U G U C C G A A
SEQRES 10 0 2880 U G G G G A A A C C C A C
SEQRES 11 0 2880 C U C G U A A G A G G U A
SEQRES 12 0 2880 U C C G C A A G G A U G G
SEQRES 13 0 2880 G A A C U C A G G G A A C
SEQRES 14 0 2880 U G A A A C A U C U C A G
SEQRES 15 0 2880 U A C C U G A A G G A G A
SEQRES 16 0 2880 A G A A A G A G A A U U C
SEQRES 17 0 2880 G A U U C C G U U A G U A
SEQRES 18 0 2880 G C G G C G A G C G A A C
SEQRES 19 0 2880 C C G G A U C A G C C C A
SEQRES 20 0 2880 A A C C G A A A C G C U U
SEQRES 21 0 2880 G C G U U U C G G G G U U
SEQRES 22 0 2880 G U A G G A C C A G U U U
SEQRES 23 0 2880 U U A A G A U U C A A C C
SEQRES 24 0 2880 C C U C A A G C C G A A G
SEQRES 25 0 2880 U G G C U G G A A A G C U
SEQRES 26 0 2880 A C A C C U C A G A A G G
SEQRES 27 0 2880 U G A G A G U C C U G U A
SEQRES 28 0 2880 G G C G A A C G A G C G G
SEQRES 29 0 2880 U U G A C U G U A C U G G
SEQRES 30 0 2880 C A C C U G A G U A G G U
SEQRES 31 0 2880 C G U U G U U C G U G A A
SEQRES 32 0 2880 A C G A U G A C U G A A U
SEQRES 33 0 2880 C C G C G C G G A C C A C
SEQRES 34 0 2880 C G C G C A A G G C U A A
SEQRES 35 0 2880 A U A C U C C C A G U G A
SEQRES 36 0 2880 C C G A U A G C G C A U A
SEQRES 37 0 2880 G U A C C G U G A G G G A
SEQRES 38 0 2880 A A G G U G A A A A G A A
SEQRES 39 0 2880 C C C C G G G A G G G G A
SEQRES 40 0 2880 G U G A A A G A G A A C C
SEQRES 41 0 2880 U G A A A C C G U G G A C
SEQRES 42 0 2880 U U A C A A G C A G U C A
SEQRES 43 0 2880 U G G C A C C U U A U G C
SEQRES 44 0 2880 G U G U U A U G G C G U G
SEQRES 45 0 2880 C C U A U U G A A G C A U
SEQRES 46 0 2880 G A G C C G G C G A C U U
SEQRES 47 0 2880 A G A C C U G A C G U G C
SEQRES 48 0 2880 G A G C U U A A G U U G A
SEQRES 49 0 2880 A A A A C G G A G G C G G
SEQRES 50 0 2880 A G C G A A A G C G A G U
SEQRES 51 0 2880 C C G A A U A G G G C G G
SEQRES 52 0 2880 C A U U A G U A C G U C G
SEQRES 53 0 2880 G G C U A G A C U C G A A
SEQRES 54 0 2880 A C C A G G U G A G C U A
SEQRES 55 0 2880 A G C A U G A C C A G G U
SEQRES 56 0 2880 U G A A A C C C C C G U G
SEQRES 57 0 2880 A C A G G G G G C G G A G
SEQRES 58 0 2880 G A C C G A A C C G G U G
SEQRES 59 0 2880 C C U G C U G A A A C A G
SEQRES 60 0 2880 U C U C G G A U G A G U U
SEQRES 61 0 2880 G U G U U U A G G A G U G
SEQRES 62 0 2880 A A A A G C U A A C C G A
SEQRES 63 0 2880 A C C U G G A G A U A G C
SEQRES 64 0 2880 U A G U U C U C C C C G A
SEQRES 65 0 2880 A A U G U A U U G A G G U
SEQRES 66 0 2880 A C A G C C U C G G A U G
SEQRES 67 0 2880 U U G A C C A U G U C C U
SEQRES 68 0 2880 G U A G A G C A C U C A C
SEQRES 69 0 2880 A A G G C U A G G G G G C
SEQRES 70 0 2880 C U A C C A G C U U A C C
SEQRES 71 0 2880 A A A C C U U A U G A A A
SEQRES 72 0 2880 C U C C G A A G G G G C A
SEQRES 73 0 2880 C G C G U U U A G U C C G
SEQRES 74 0 2880 G G A G U G A G G C U G C
SEQRES 75 0 2880 G A G A G C U A A C U U C
SEQRES 76 0 2880 C G U A G C C G A G A G G
SEQRES 77 0 2880 G A A A C A A C C C A G A
SEQRES 78 0 2880 C C A U C A G C U A A G G
SEQRES 79 0 2880 U C C C U A A A U G A U C
SEQRES 80 0 2880 G C U C A G U G G U U A A
SEQRES 81 0 2880 G G A U G U G U C G U C G
SEQRES 82 0 2880 C A U A G A C A G C C A G
SEQRES 83 0 2880 G A G G U U G G C U U A G
SEQRES 84 0 2880 A A G C A G C C A C C C U
SEQRES 85 0 2880 U C A A A G A G U G C G U
SEQRES 86 0 2880 A A U A G C U C A C U G G
SEQRES 87 0 2880 U C G A G U G A C G A U G
SEQRES 88 0 2880 C G C C G A A A A U G A U
SEQRES 89 0 2880 C G G G G C U C A A G U G
SEQRES 90 0 2880 A U C U A C C G A A G C U
SEQRES 91 0 2880 A U G G A U U C A A C U C
SEQRES 92 0 2880 G C G A A G C G A G U U G
SEQRES 93 0 2880 U C U G G U A G G G G A G
SEQRES 94 0 2880 C G U U C A G U C C G C G
SEQRES 95 0 2880 G A G A A G C C A U A C C
SEQRES 96 0 2880 G G A A G G A G U G G U G
SEQRES 97 0 2880 G A G C C G A C U G A A G
SEQRES 98 0 2880 U G C G G A U G C C G G C
SEQRES 99 0 2880 A U G A G U A A C G A U A
SEQRES 100 0 2880 A A A G A A G U G A G A A
SEQRES 101 0 2880 U C U U C U U C G C C G U
SEQRES 102 0 2880 A A G G A C A A G G G U U
SEQRES 103 0 2880 C C U G G G G A A G G G U
SEQRES 104 0 2880 C G U C C G C C C A G G G
SEQRES 105 0 2880 A A A G U C G G G A C C U
SEQRES 106 0 2880 A A G G U G A G G C C G A
SEQRES 107 0 2880 A C G G C G C A G C C G A
SEQRES 108 0 2880 U G G A C A G C A G G U C
SEQRES 109 0 2880 A A G A U U C C U G C A C
SEQRES 110 0 2880 C G A U C A U G U G G A G
SEQRES 111 0 2880 U G A U G G A G G G A C G
SEQRES 112 0 2880 C A U U A C G C U A U C C
SEQRES 113 0 2880 A A U G C C A A G C U A U
SEQRES 114 0 2880 G G C U A U G C U G G U U
SEQRES 115 0 2880 G G U A C G C U C A A G G
SEQRES 116 0 2880 G C G A U C G G G U C A G
SEQRES 117 0 2880 A A A A U C U A C C G G U
SEQRES 118 0 2880 C A C A U G C C U C A G A
SEQRES 119 0 2880 C G U A U C G G G A G C U
SEQRES 120 0 2880 U C C U C G G A A G C G A
SEQRES 121 0 2880 A G U U G G A A A C G C G
SEQRES 122 0 2880 A C G G U G C C A A G A A
SEQRES 123 0 2880 A A G C U U C U A A A C G
SEQRES 124 0 2880 U U G A A A C A U G A U U
SEQRES 125 0 2880 G C C C G U A C C G C A A
SEQRES 126 0 2880 A C C G A C A C A G G U G
SEQRES 127 0 2880 U C C G A G U G U C A A U
SEQRES 128 0 2880 G C A C U A A G G C G C G
SEQRES 129 0 2880 C G A G A G A A C C C U C
SEQRES 130 0 2880 G U U A A G G A A C U U U
SEQRES 131 0 2880 G C A A U C U C A C C C C
SEQRES 132 0 2880 G U A A C U U C G G A A G
SEQRES 133 0 2880 A A G G G G U C C C C A C
SEQRES 134 0 2880 G C U U C G C G U G G G G
SEQRES 135 0 2880 C G C A G U G A A U A G G
SEQRES 136 0 2880 C C C A G G C G A C U G U
SEQRES 137 0 2880 U U A C C A A A A U C A C
SEQRES 138 0 2880 A G C A C U C U G C C A A
SEQRES 139 0 2880 C A C G A A C A G U G G A
SEQRES 140 0 2880 C G U A U A G G G U G U G
SEQRES 141 0 2880 A C G C C U G C C C G G U
SEQRES 142 0 2880 G C C G G A A G G U C A A
SEQRES 143 0 2880 G U G G A G C G G U G C A
SEQRES 144 0 2880 A G C U G C G A A A U G A
SEQRES 145 0 2880 A G C C C C G G U G A A C
SEQRES 146 0 2880 G G C G G C C G U A A C U
SEQRES 147 0 2880 A U A A C G G U C C U A A
SEQRES 148 0 2880 G G U A G C G A A A U U C
SEQRES 149 0 2880 C U U G U C G G G U A A G
SEQRES 150 0 2880 U U C C G A C C U G C A C
SEQRES 151 0 2880 G A A A G G C G U A A C G
SEQRES 152 0 2880 A U C U G G G C G C U G U
SEQRES 153 0 2880 C U C A A C G A G G G A C
SEQRES 154 0 2880 U C G G U G A A A U U G A
SEQRES 155 0 2880 A U U G G C U G U A A A G
SEQRES 156 0 2880 A U G C G G C C U A C C C
SEQRES 157 0 2880 G U A G C A G G A C G A A
SEQRES 158 0 2880 A A G A C C C C G U G G A
SEQRES 159 0 2880 G C U U U A C U A U A G U
SEQRES 160 0 2880 C U G G C A U U G G G A U
SEQRES 161 0 2880 U C G G G U U U C U C U G
SEQRES 162 0 2880 C G U A G G A U A G G U G
SEQRES 163 0 2880 G G A G C C U G C G A A A
SEQRES 164 0 2880 C U G G C C U U U U G G G
SEQRES 165 0 2880 G U C G G U G G A G G C A
SEQRES 166 0 2880 A C G G U G A A A U A C C
SEQRES 167 0 2880 A C C C U G A G A A A C U
SEQRES 168 0 2880 U G G A U U U C U A A C C
SEQRES 169 0 2880 U G A A A A A U C A C U U
SEQRES 170 0 2880 U C G G G G A C C G U G C
SEQRES 171 0 2880 U U G G C G G G U A G U U
SEQRES 172 0 2880 U G A C U G G G G C G G U
SEQRES 173 0 2880 C G C C U C C C A A A A U
SEQRES 174 0 2880 G U A A C G G A G G C G C
SEQRES 175 0 2880 C C A A A G G U C A C C U
SEQRES 176 0 2880 C A A G A C G G U U G G A
SEQRES 177 0 2880 A A U C G U C U G U A G A
SEQRES 178 0 2880 G C G C A A A G G U A G A
SEQRES 179 0 2880 A G G U G G C U U G A C U
SEQRES 180 0 2880 G C G A G A C U G A C A C
SEQRES 181 0 2880 G U C G A G C A G G G A G
SEQRES 182 0 2880 G A A A C U C G G G C U U
SEQRES 183 0 2880 A G U G A A C C G G U G G
SEQRES 184 0 2880 U A C C G U G U G G A A G
SEQRES 185 0 2880 G G C C A U C G A U C A A
SEQRES 186 0 2880 C G G A U A A A A G U U A
SEQRES 187 0 2880 C C C C G G G G A U A A C
SEQRES 188 0 2880 A G G C U G A U C U C C C
SEQRES 189 0 2880 C C G A G A G U C C A U A
SEQRES 190 0 2880 U C G G C G G G G A G G U
SEQRES 191 0 2880 U U G G C A C C U C G A U
SEQRES 192 0 2880 G U C G G C U C G U C G C
SEQRES 193 0 2880 A U C C U G G G G C U G A
SEQRES 194 0 2880 A G A A G G U C C C A A G
SEQRES 195 0 2880 G G U U G G G C U G U U C
SEQRES 196 0 2880 G C C C A U U A A A G C G
SEQRES 197 0 2880 G C A C G C G A G C U G G
SEQRES 198 0 2880 G U U C A G A A C G U C G
SEQRES 199 0 2880 U G A G A C A G U U C G G
SEQRES 200 0 2880 U C U C U A U C C G C U A
SEQRES 201 0 2880 C G G G C G C A G G A G A
SEQRES 202 0 2880 A U U G A G G G G A G U U
SEQRES 203 0 2880 G C U C C U A G U A C G A
SEQRES 204 0 2880 G A G G A C C G G A G U G
SEQRES 205 0 2880 A A C G G A C C G C U G G
SEQRES 206 0 2880 U C U C C C U G C U G U C
SEQRES 207 0 2880 G U A C C A A C G G C A C
SEQRES 208 0 2880 A U G C A G G G U A G C U
SEQRES 209 0 2880 A U G U C C G G A A C G G
SEQRES 210 0 2880 A U A A C C G C U G A A A
SEQRES 211 0 2880 G C A U C U A A G C G G G
SEQRES 212 0 2880 A A G C C A G C C C C A A
SEQRES 213 0 2880 G A U G A G U U C U C C C
SEQRES 214 0 2880 A C U G U U U A U C A G G
SEQRES 215 0 2880 U A A G A C U C C C G G A
SEQRES 216 0 2880 A G A C C A C C G G G U U
SEQRES 217 0 2880 A A G A G G C C A G G C G
SEQRES 218 0 2880 U G C A C G C A U A G C A
SEQRES 219 0 2880 A U G U G U U C A G C G G
SEQRES 220 0 2880 A C U G G U G C U C A U C
SEQRES 221 0 2880 A G U C G A G G U C U U G
SEQRES 222 0 2880 A C C A C U C
HET TEL 02881 58
HETNAM TEL TELITHROMYCIN
HETSYN TEL (3AS,4R,7R,9R,10R,11R,13R,15R,15AR)-4-ETHYL-11-METHOXY-
HETSYN 2 TEL 3A,7,9,11,13,15-HEXAMETHYL-2,6,8,14-TETRAOXO-1-{4-[4-
HETSYN 3 TEL (PYRIDIN-3-YL)-1H-IMIDAZOL-1-YL]BUTYL}TETRADECAHYDRO-
HETSYN 4 TEL 2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-10-YL 3,4,6-
HETSYN 5 TEL TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE
FORMUL 2 TEL C43 H65 N5 O10
SITE 1 AC1 5 C 0 759 C 0 803 A 02041 G 02484
SITE 2 AC1 5 U 02590
CRYST1 170.000 414.500 693.000 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005882 0.000000 0.000000 0.00000
SCALE2 0.000000 0.002439 0.000000 0.00000
SCALE3 0.000000 0.000000 0.001435 0.00000