HEADER RIBOSOME 13-MAY-03 1P9X TITLE THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM TITLE 2 DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE TITLE 3 ANTIBIOTIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; COMPND 3 CHAIN: 0 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299 KEYWDS RIBOSOMES, TRNA, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT-TUNNEL, KEYWDS 2 BLOCKAGE, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR R.BERISIO,J.HARMS,F.SCHLUENZEN,R.ZARIVACH,H.A.HANSEN,P.FUCINI, AUTHOR 2 A.YONATH REVDAT 4 16-AUG-23 1P9X 1 REMARK REVDAT 3 27-JAN-21 1P9X 1 REMARK HETSYN REVDAT 2 24-FEB-09 1P9X 1 VERSN REVDAT 1 05-AUG-03 1P9X 0 JRNL AUTH R.BERISIO,J.HARMS,F.SCHLUENZEN,R.ZARIVACH,H.A.HANSEN, JRNL AUTH 2 P.FUCINI,A.YONATH JRNL TITL STRUCTURAL INSIGHT INTO THE ANTIBIOTIC ACTION OF JRNL TITL 2 TELITHROMYCIN AGAINST RESISTANT MUTANTS JRNL REF J.BACTERIOL. V. 185 4276 2003 JRNL REFN ISSN 0021-9193 JRNL PMID 12837804 JRNL DOI 10.1128/JB.185.14.4276-4279.2003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.SCHLUNZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ,R.ALBRECHT, REMARK 1 AUTH 2 A.YONATH,F.FRANCESCHI REMARK 1 TITL STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE REMARK 1 TITL 2 PEPTIDYL TRANSFERASE CENTRE IN EUBACTERIA REMARK 1 REF NATURE V. 413 814 2001 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/35101544 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 245223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9254 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 58759 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.04 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.05 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-02; NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0; NULL REMARK 200 PH : 7. REMARK 200 NUMBER OF CRYSTALS USED : 10 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; ESRF REMARK 200 BEAMLINE : 19-ID; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033; NULL REMARK 200 MONOCHROMATOR : SI111; SI311 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 273922 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1NKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7., EVAPORATION, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 207.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 346.50000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 207.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 346.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 207.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 346.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 207.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 346.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A 0 249 REMARK 465 C 0 250 REMARK 465 C 0 251 REMARK 465 G 0 252 REMARK 465 A 0 253 REMARK 465 A 0 254 REMARK 465 A 0 255 REMARK 465 C 0 256 REMARK 465 G 0 257 REMARK 465 C 0 258 REMARK 465 U 0 259 REMARK 465 U 0 260 REMARK 465 G 0 261 REMARK 465 C 0 262 REMARK 465 G 0 263 REMARK 465 U 0 264 REMARK 465 U 0 265 REMARK 465 U 0 266 REMARK 465 C 0 267 REMARK 465 G 0 268 REMARK 465 G 0 269 REMARK 465 G 0 270 REMARK 465 G 0 271 REMARK 465 U 0 272 REMARK 465 U 0 273 REMARK 465 G 0 274 REMARK 465 U 0 275 REMARK 465 A 0 276 REMARK 465 G 0 277 REMARK 465 G 0 278 REMARK 465 A 0 279 REMARK 465 C 0 280 REMARK 465 C 0 281 REMARK 465 A 0 282 REMARK 465 G 0 283 REMARK 465 U 0 284 REMARK 465 U 0 285 REMARK 465 U 0 286 REMARK 465 U 0 287 REMARK 465 U 0 288 REMARK 465 A 0 289 REMARK 465 A 0 290 REMARK 465 G 0 291 REMARK 465 C 0 374 REMARK 465 U 0 375 REMARK 465 G 0 376 REMARK 465 G 0 377 REMARK 465 C 0 378 REMARK 465 A 0 379 REMARK 465 C 0 380 REMARK 465 C 0 381 REMARK 465 U 0 382 REMARK 465 G 0 383 REMARK 465 A 0 384 REMARK 465 G 0 385 REMARK 465 U 0 386 REMARK 465 A 0 404 REMARK 465 C 0 405 REMARK 465 G 0 406 REMARK 465 A 0 407 REMARK 465 U 0 408 REMARK 465 G 0 409 REMARK 465 A 0 410 REMARK 465 C 0 411 REMARK 465 U 0 412 REMARK 465 G 0 413 REMARK 465 A 0 414 REMARK 465 A 0 415 REMARK 465 U 0 416 REMARK 465 C 0 417 REMARK 465 C 0 418 REMARK 465 G 0 419 REMARK 465 C 0 420 REMARK 465 G 0 421 REMARK 465 C 0 422 REMARK 465 G 0 423 REMARK 465 G 0 424 REMARK 465 A 0 425 REMARK 465 C 0 426 REMARK 465 C 0 427 REMARK 465 A 0 428 REMARK 465 C 0 429 REMARK 465 G 0 892 REMARK 465 G 0 893 REMARK 465 G 0 894 REMARK 465 G 0 895 REMARK 465 G 0 896 REMARK 465 C 0 897 REMARK 465 C 0 898 REMARK 465 U 0 899 REMARK 465 A 0 900 REMARK 465 C 0 901 REMARK 465 C 0 902 REMARK 465 A 0 903 REMARK 465 G 0 904 REMARK 465 C 0 905 REMARK 465 U 0 906 REMARK 465 U 0 907 REMARK 465 A 0 908 REMARK 465 C 0 909 REMARK 465 C 0 910 REMARK 465 A 0 1275 REMARK 465 G 0 1742 REMARK 465 G 0 2098 REMARK 465 G 0 2099 REMARK 465 A 0 2100 REMARK 465 U 0 2101 REMARK 465 A 0 2102 REMARK 465 C 0 2111 REMARK 465 C 0 2112 REMARK 465 U 0 2113 REMARK 465 G 0 2114 REMARK 465 C 0 2115 REMARK 465 G 0 2116 REMARK 465 U 0 2126 REMARK 465 U 0 2127 REMARK 465 U 0 2128 REMARK 465 U 0 2129 REMARK 465 G 0 2130 REMARK 465 G 0 2131 REMARK 465 A 0 2141 REMARK 465 G 0 2142 REMARK 465 G 0 2143 REMARK 465 C 0 2144 REMARK 465 A 0 2145 REMARK 465 A 0 2146 REMARK 465 C 0 2147 REMARK 465 G 0 2148 REMARK 465 G 0 2149 REMARK 465 U 0 2150 REMARK 465 G 0 2151 REMARK 465 A 0 2152 REMARK 465 A 0 2153 REMARK 465 A 0 2154 REMARK 465 U 0 2155 REMARK 465 A 0 2156 REMARK 465 U 0 2775 REMARK 465 U 0 2776 REMARK 465 A 0 2777 REMARK 465 C 0 2878 REMARK 465 U 0 2879 REMARK 465 C 0 2880 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' G 0 588 O2' G 0 2001 2.06 REMARK 500 O2 C 0 700 O3' U 0 800 2.09 REMARK 500 O6 G 0 431 N2 G 0 433 2.15 REMARK 500 O6 G 0 540 OP1 G 0 2006 2.16 REMARK 500 O2' A 0 2043 O4' G 0 2481 2.17 REMARK 500 O2 U 0 873 O5' A 0 2247 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A 0 762 O3' A 0 763 P -0.097 REMARK 500 G 0 950 C5 G 0 950 C6 0.061 REMARK 500 U 01276 N1 U 01276 C2 0.056 REMARK 500 U 01410 N1 U 01410 C2 0.060 REMARK 500 G 01749 C5' G 01749 C4' -0.047 REMARK 500 U 02493 N1 U 02493 C2 -0.057 REMARK 500 U 02501 C5' U 02501 C4' -0.043 REMARK 500 G 02555 C5 G 02555 C6 -0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C 0 430 C5' - C4' - O4' ANGL. DEV. = -7.7 DEGREES REMARK 500 G 0 438 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 A 0 763 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 A 0 764 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 C 0 765 C5' - C4' - O4' ANGL. DEV. = 6.3 DEGREES REMARK 500 C 0 765 N1 - C1' - C2' ANGL. DEV. = 14.4 DEGREES REMARK 500 C 0 765 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 U 01182 O4' - C1' - N1 ANGL. DEV. = 10.8 DEGREES REMARK 500 U 01618 C5' - C4' - O4' ANGL. DEV. = -7.7 DEGREES REMARK 500 G 02001 N9 - C1' - C2' ANGL. DEV. = -10.8 DEGREES REMARK 500 A 02040 OP1 - P - OP2 ANGL. DEV. = -9.6 DEGREES REMARK 500 A 02041 OP1 - P - OP2 ANGL. DEV. = -10.3 DEGREES REMARK 500 A 02042 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 G 02044 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 G 02044 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES REMARK 500 A 02045 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 C 02046 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G 0 229 0.05 SIDE CHAIN REMARK 500 G 0 389 0.06 SIDE CHAIN REMARK 500 G 0 431 0.08 SIDE CHAIN REMARK 500 G 0 438 0.08 SIDE CHAIN REMARK 500 A 0 459 0.07 SIDE CHAIN REMARK 500 C 0 520 0.07 SIDE CHAIN REMARK 500 U 0 555 0.07 SIDE CHAIN REMARK 500 U 0 707 0.07 SIDE CHAIN REMARK 500 G 0 788 0.06 SIDE CHAIN REMARK 500 A 0 796 0.06 SIDE CHAIN REMARK 500 C 0 804 0.09 SIDE CHAIN REMARK 500 G 0 814 0.08 SIDE CHAIN REMARK 500 U 0 871 0.08 SIDE CHAIN REMARK 500 U 0 873 0.10 SIDE CHAIN REMARK 500 A 0 956 0.07 SIDE CHAIN REMARK 500 G 01036 0.07 SIDE CHAIN REMARK 500 U 01475 0.06 SIDE CHAIN REMARK 500 A 01619 0.06 SIDE CHAIN REMARK 500 A 01632 0.07 SIDE CHAIN REMARK 500 A 01774 0.06 SIDE CHAIN REMARK 500 U 02051 0.07 SIDE CHAIN REMARK 500 U 02439 0.07 SIDE CHAIN REMARK 500 U 02625 0.07 SIDE CHAIN REMARK 500 C 02660 0.07 SIDE CHAIN REMARK 500 U 02700 0.07 SIDE CHAIN REMARK 500 U 02706 0.08 SIDE CHAIN REMARK 500 G 02712 0.05 SIDE CHAIN REMARK 500 G 02762 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TEL 0 2881 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NKW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS REMARK 900 RADIODURANS REMARK 900 RELATED ID: 1NJM RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM/SPARSOMYCIN REMARK 900 RELATED ID: 1NJN RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN REMARK 900 RELATED ID: 1JZY RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN REMARK 900 RELATED ID: 1JZX RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN REMARK 900 RELATED ID: 1OND RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH TROLEANDOMYCIN DBREF 1P9X 0 1 2880 GB 6460405 AE002087 4635 7514 SEQRES 1 0 2880 G G U C A A G A U A G U A SEQRES 2 0 2880 A G G G U C C A C G G U G SEQRES 3 0 2880 G A U G C C C U G G C G C SEQRES 4 0 2880 U G G A G C C G A U G A A SEQRES 5 0 2880 G G A C G C G A U U A C C SEQRES 6 0 2880 U G C G A A A A G C C C C SEQRES 7 0 2880 G A C G A G C U G G A G A SEQRES 8 0 2880 U A C G C U U U G A C U C SEQRES 9 0 2880 G G G G A U G U C C G A A SEQRES 10 0 2880 U G G G G A A A C C C A C SEQRES 11 0 2880 C U C G U A A G A G G U A SEQRES 12 0 2880 U C C G C A A G G A U G G SEQRES 13 0 2880 G A A C U C A G G G A A C SEQRES 14 0 2880 U G A A A C A U C U C A G SEQRES 15 0 2880 U A C C U G A A G G A G A SEQRES 16 0 2880 A G A A A G A G A A U U C SEQRES 17 0 2880 G A U U C C G U U A G U A SEQRES 18 0 2880 G C G G C G A G C G A A C SEQRES 19 0 2880 C C G G A U C A G C C C A SEQRES 20 0 2880 A A C C G A A A C G C U U SEQRES 21 0 2880 G C G U U U C G G G G U U SEQRES 22 0 2880 G U A G G A C C A G U U U SEQRES 23 0 2880 U U A A G A U U C A A C C SEQRES 24 0 2880 C C U C A A G C C G A A G SEQRES 25 0 2880 U G G C U G G A A A G C U SEQRES 26 0 2880 A C A C C U C A G A A G G SEQRES 27 0 2880 U G A G A G U C C U G U A SEQRES 28 0 2880 G G C G A A C G A G C G G SEQRES 29 0 2880 U U G A C U G U A C U G G SEQRES 30 0 2880 C A C C U G A G U A G G U SEQRES 31 0 2880 C G U U G U U C G U G A A SEQRES 32 0 2880 A C G A U G A C U G A A U SEQRES 33 0 2880 C C G C G C G G A C C A C SEQRES 34 0 2880 C G C G C A A G G C U A A SEQRES 35 0 2880 A U A C U C C C A G U G A SEQRES 36 0 2880 C C G A U A G C G C A U A SEQRES 37 0 2880 G U A C C G U G A G G G A SEQRES 38 0 2880 A A G G U G A A A A G A A SEQRES 39 0 2880 C C C C G G G A G G G G A SEQRES 40 0 2880 G U G A A A G A G A A C C SEQRES 41 0 2880 U G A A A C C G U G G A C SEQRES 42 0 2880 U U A C A A G C A G U C A SEQRES 43 0 2880 U G G C A C C U U A U G C SEQRES 44 0 2880 G U G U U A U G G C G U G SEQRES 45 0 2880 C C U A U U G A A G C A U SEQRES 46 0 2880 G A G C C G G C G A C U U SEQRES 47 0 2880 A G A C C U G A C G U G C SEQRES 48 0 2880 G A G C U U A A G U U G A SEQRES 49 0 2880 A A A A C G G A G G C G G SEQRES 50 0 2880 A G C G A A A G C G A G U SEQRES 51 0 2880 C C G A A U A G G G C G G SEQRES 52 0 2880 C A U U A G U A C G U C G SEQRES 53 0 2880 G G C U A G A C U C G A A SEQRES 54 0 2880 A C C A G G U G A G C U A SEQRES 55 0 2880 A G C A U G A C C A G G U SEQRES 56 0 2880 U G A A A C C C C C G U G SEQRES 57 0 2880 A C A G G G G G C G G A G SEQRES 58 0 2880 G A C C G A A C C G G U G SEQRES 59 0 2880 C C U G C U G A A A C A G SEQRES 60 0 2880 U C U C G G A U G A G U U SEQRES 61 0 2880 G U G U U U A G G A G U G SEQRES 62 0 2880 A A A A G C U A A C C G A SEQRES 63 0 2880 A C C U G G A G A U A G C SEQRES 64 0 2880 U A G U U C U C C C C G A SEQRES 65 0 2880 A A U G U A U U G A G G U SEQRES 66 0 2880 A C A G C C U C G G A U G SEQRES 67 0 2880 U U G A C C A U G U C C U SEQRES 68 0 2880 G U A G A G C A C U C A C SEQRES 69 0 2880 A A G G C U A G G G G G C SEQRES 70 0 2880 C U A C C A G C U U A C C SEQRES 71 0 2880 A A A C C U U A U G A A A SEQRES 72 0 2880 C U C C G A A G G G G C A SEQRES 73 0 2880 C G C G U U U A G U C C G SEQRES 74 0 2880 G G A G U G A G G C U G C SEQRES 75 0 2880 G A G A G C U A A C U U C SEQRES 76 0 2880 C G U A G C C G A G A G G SEQRES 77 0 2880 G A A A C A A C C C A G A SEQRES 78 0 2880 C C A U C A G C U A A G G SEQRES 79 0 2880 U C C C U A A A U G A U C SEQRES 80 0 2880 G C U C A G U G G U U A A SEQRES 81 0 2880 G G A U G U G U C G U C G SEQRES 82 0 2880 C A U A G A C A G C C A G SEQRES 83 0 2880 G A G G U U G G C U U A G SEQRES 84 0 2880 A A G C A G C C A C C C U SEQRES 85 0 2880 U C A A A G A G U G C G U SEQRES 86 0 2880 A A U A G C U C A C U G G SEQRES 87 0 2880 U C G A G U G A C G A U G SEQRES 88 0 2880 C G C C G A A A A U G A U SEQRES 89 0 2880 C G G G G C U C A A G U G SEQRES 90 0 2880 A U C U A C C G A A G C U SEQRES 91 0 2880 A U G G A U U C A A C U C SEQRES 92 0 2880 G C G A A G C G A G U U G SEQRES 93 0 2880 U C U G G U A G G G G A G SEQRES 94 0 2880 C G U U C A G U C C G C G SEQRES 95 0 2880 G A G A A G C C A U A C C SEQRES 96 0 2880 G G A A G G A G U G G U G SEQRES 97 0 2880 G A G C C G A C U G A A G SEQRES 98 0 2880 U G C G G A U G C C G G C SEQRES 99 0 2880 A U G A G U A A C G A U A SEQRES 100 0 2880 A A A G A A G U G A G A A SEQRES 101 0 2880 U C U U C U U C G C C G U SEQRES 102 0 2880 A A G G A C A A G G G U U SEQRES 103 0 2880 C C U G G G G A A G G G U SEQRES 104 0 2880 C G U C C G C C C A G G G SEQRES 105 0 2880 A A A G U C G G G A C C U SEQRES 106 0 2880 A A G G U G A G G C C G A SEQRES 107 0 2880 A C G G C G C A G C C G A SEQRES 108 0 2880 U G G A C A G C A G G U C SEQRES 109 0 2880 A A G A U U C C U G C A C SEQRES 110 0 2880 C G A U C A U G U G G A G SEQRES 111 0 2880 U G A U G G A G G G A C G SEQRES 112 0 2880 C A U U A C G C U A U C C SEQRES 113 0 2880 A A U G C C A A G C U A U SEQRES 114 0 2880 G G C U A U G C U G G U U SEQRES 115 0 2880 G G U A C G C U C A A G G SEQRES 116 0 2880 G C G A U C G G G U C A G SEQRES 117 0 2880 A A A A U C U A C C G G U SEQRES 118 0 2880 C A C A U G C C U C A G A SEQRES 119 0 2880 C G U A U C G G G A G C U SEQRES 120 0 2880 U C C U C G G A A G C G A SEQRES 121 0 2880 A G U U G G A A A C G C G SEQRES 122 0 2880 A C G G U G C C A A G A A SEQRES 123 0 2880 A A G C U U C U A A A C G SEQRES 124 0 2880 U U G A A A C A U G A U U SEQRES 125 0 2880 G C C C G U A C C G C A A SEQRES 126 0 2880 A C C G A C A C A G G U G SEQRES 127 0 2880 U C C G A G U G U C A A U SEQRES 128 0 2880 G C A C U A A G G C G C G SEQRES 129 0 2880 C G A G A G A A C C C U C SEQRES 130 0 2880 G U U A A G G A A C U U U SEQRES 131 0 2880 G C A A U C U C A C C C C SEQRES 132 0 2880 G U A A C U U C G G A A G SEQRES 133 0 2880 A A G G G G U C C C C A C SEQRES 134 0 2880 G C U U C G C G U G G G G SEQRES 135 0 2880 C G C A G U G A A U A G G SEQRES 136 0 2880 C C C A G G C G A C U G U SEQRES 137 0 2880 U U A C C A A A A U C A C SEQRES 138 0 2880 A G C A C U C U G C C A A SEQRES 139 0 2880 C A C G A A C A G U G G A SEQRES 140 0 2880 C G U A U A G G G U G U G SEQRES 141 0 2880 A C G C C U G C C C G G U SEQRES 142 0 2880 G C C G G A A G G U C A A SEQRES 143 0 2880 G U G G A G C G G U G C A SEQRES 144 0 2880 A G C U G C G A A A U G A SEQRES 145 0 2880 A G C C C C G G U G A A C SEQRES 146 0 2880 G G C G G C C G U A A C U SEQRES 147 0 2880 A U A A C G G U C C U A A SEQRES 148 0 2880 G G U A G C G A A A U U C SEQRES 149 0 2880 C U U G U C G G G U A A G SEQRES 150 0 2880 U U C C G A C C U G C A C SEQRES 151 0 2880 G A A A G G C G U A A C G SEQRES 152 0 2880 A U C U G G G C G C U G U SEQRES 153 0 2880 C U C A A C G A G G G A C SEQRES 154 0 2880 U C G G U G A A A U U G A SEQRES 155 0 2880 A U U G G C U G U A A A G SEQRES 156 0 2880 A U G C G G C C U A C C C SEQRES 157 0 2880 G U A G C A G G A C G A A SEQRES 158 0 2880 A A G A C C C C G U G G A SEQRES 159 0 2880 G C U U U A C U A U A G U SEQRES 160 0 2880 C U G G C A U U G G G A U SEQRES 161 0 2880 U C G G G U U U C U C U G SEQRES 162 0 2880 C G U A G G A U A G G U G SEQRES 163 0 2880 G G A G C C U G C G A A A SEQRES 164 0 2880 C U G G C C U U U U G G G SEQRES 165 0 2880 G U C G G U G G A G G C A SEQRES 166 0 2880 A C G G U G A A A U A C C SEQRES 167 0 2880 A C C C U G A G A A A C U SEQRES 168 0 2880 U G G A U U U C U A A C C SEQRES 169 0 2880 U G A A A A A U C A C U U SEQRES 170 0 2880 U C G G G G A C C G U G C SEQRES 171 0 2880 U U G G C G G G U A G U U SEQRES 172 0 2880 U G A C U G G G G C G G U SEQRES 173 0 2880 C G C C U C C C A A A A U SEQRES 174 0 2880 G U A A C G G A G G C G C SEQRES 175 0 2880 C C A A A G G U C A C C U SEQRES 176 0 2880 C A A G A C G G U U G G A SEQRES 177 0 2880 A A U C G U C U G U A G A SEQRES 178 0 2880 G C G C A A A G G U A G A SEQRES 179 0 2880 A G G U G G C U U G A C U SEQRES 180 0 2880 G C G A G A C U G A C A C SEQRES 181 0 2880 G U C G A G C A G G G A G SEQRES 182 0 2880 G A A A C U C G G G C U U SEQRES 183 0 2880 A G U G A A C C G G U G G SEQRES 184 0 2880 U A C C G U G U G G A A G SEQRES 185 0 2880 G G C C A U C G A U C A A SEQRES 186 0 2880 C G G A U A A A A G U U A SEQRES 187 0 2880 C C C C G G G G A U A A C SEQRES 188 0 2880 A G G C U G A U C U C C C SEQRES 189 0 2880 C C G A G A G U C C A U A SEQRES 190 0 2880 U C G G C G G G G A G G U SEQRES 191 0 2880 U U G G C A C C U C G A U SEQRES 192 0 2880 G U C G G C U C G U C G C SEQRES 193 0 2880 A U C C U G G G G C U G A SEQRES 194 0 2880 A G A A G G U C C C A A G SEQRES 195 0 2880 G G U U G G G C U G U U C SEQRES 196 0 2880 G C C C A U U A A A G C G SEQRES 197 0 2880 G C A C G C G A G C U G G SEQRES 198 0 2880 G U U C A G A A C G U C G SEQRES 199 0 2880 U G A G A C A G U U C G G SEQRES 200 0 2880 U C U C U A U C C G C U A SEQRES 201 0 2880 C G G G C G C A G G A G A SEQRES 202 0 2880 A U U G A G G G G A G U U SEQRES 203 0 2880 G C U C C U A G U A C G A SEQRES 204 0 2880 G A G G A C C G G A G U G SEQRES 205 0 2880 A A C G G A C C G C U G G SEQRES 206 0 2880 U C U C C C U G C U G U C SEQRES 207 0 2880 G U A C C A A C G G C A C SEQRES 208 0 2880 A U G C A G G G U A G C U SEQRES 209 0 2880 A U G U C C G G A A C G G SEQRES 210 0 2880 A U A A C C G C U G A A A SEQRES 211 0 2880 G C A U C U A A G C G G G SEQRES 212 0 2880 A A G C C A G C C C C A A SEQRES 213 0 2880 G A U G A G U U C U C C C SEQRES 214 0 2880 A C U G U U U A U C A G G SEQRES 215 0 2880 U A A G A C U C C C G G A SEQRES 216 0 2880 A G A C C A C C G G G U U SEQRES 217 0 2880 A A G A G G C C A G G C G SEQRES 218 0 2880 U G C A C G C A U A G C A SEQRES 219 0 2880 A U G U G U U C A G C G G SEQRES 220 0 2880 A C U G G U G C U C A U C SEQRES 221 0 2880 A G U C G A G G U C U U G SEQRES 222 0 2880 A C C A C U C HET TEL 02881 58 HETNAM TEL TELITHROMYCIN HETSYN TEL (3AS,4R,7R,9R,10R,11R,13R,15R,15AR)-4-ETHYL-11-METHOXY- HETSYN 2 TEL 3A,7,9,11,13,15-HEXAMETHYL-2,6,8,14-TETRAOXO-1-{4-[4- HETSYN 3 TEL (PYRIDIN-3-YL)-1H-IMIDAZOL-1-YL]BUTYL}TETRADECAHYDRO- HETSYN 4 TEL 2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-10-YL 3,4,6- HETSYN 5 TEL TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE FORMUL 2 TEL C43 H65 N5 O10 SITE 1 AC1 5 C 0 759 C 0 803 A 02041 G 02484 SITE 2 AC1 5 U 02590 CRYST1 170.000 414.500 693.000 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001435 0.00000