HEADER TRANSLATION 15-MAY-03 1PBU TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HUMAN EEF1BGAMMA TITLE 2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-GAMMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 276-437); COMPND 5 SYNONYM: EF-1-GAMMA, EEF-1B GAMMA, PRO1608; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EEF1G OR EF1G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS ALPHA/BETA, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.VANWETSWINKEL,J.KRIEK,G.R.ANDERSEN,P.GUNTERT,J.DIJK,G.W.CANTERS, AUTHOR 2 G.SIEGAL REVDAT 3 27-OCT-21 1PBU 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PBU 1 VERSN REVDAT 1 15-JUL-03 1PBU 0 JRNL AUTH S.VANWETSWINKEL,J.KRIEK,G.R.ANDERSEN,J.DIJK,G.SIEGAL JRNL TITL 1H, (15)N AND (13)C RESONANCE ASSIGNMENTS OF THE HIGHLY JRNL TITL 2 CONSERVED 19 KDA C-TERMINAL DOMAIN FROM HUMAN ELONGATION JRNL TITL 3 FACTOR 1BGAMMA. JRNL REF J.BIOMOL.NMR V. 26 189 2003 JRNL REFN ISSN 0925-2738 JRNL PMID 12766415 JRNL DOI 10.1023/A:1023504611632 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, OPALP REMARK 3 AUTHORS : BRUKER (XWINNMR), KORADI, R. ET AL. (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 3920 NOE-DERIVED DISTANCE CONSTRAINTS REMARK 4 REMARK 4 1PBU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019219. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 75MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM EEF1BGAMMA[276-437]U REMARK 210 -15N,13C, 20MM TRIS-HCL PH7.5, REMARK 210 75MM KCL, 1MM DTT, 0.02%NAN3 (W/ REMARK 210 V); 1MM EEF1BGAMMA[276-437]U-15N, REMARK 210 20MM TRIS-HCL PH7.5, 75MM KCL, REMARK 210 1MM DTT, 0.02%NAN3 (W/V) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; STANDARD REMARK 210 TRIPLE RESONANCE EXPERIMENTS; REMARK 210 HCCH-TOCSY AND CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, XEASY 1.3.13, CYANA REMARK 210 1.06, VNMR 5.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 414 HG SER A 418 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 348 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 4 TYR A 297 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 7 TYR A 323 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 9 TYR A 297 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 9 ARG A 378 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 9 ARG A 378 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 TYR A 326 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 10 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 ARG A 353 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 13 TYR A 323 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 15 ARG A 348 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 15 ARG A 378 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 278 98.67 56.47 REMARK 500 1 PHE A 280 39.68 -87.53 REMARK 500 1 PRO A 284 -150.64 -81.85 REMARK 500 1 ARG A 295 -70.67 -77.14 REMARK 500 1 VAL A 305 -73.17 -120.80 REMARK 500 1 PHE A 314 -103.18 -68.06 REMARK 500 1 ASP A 315 39.70 171.27 REMARK 500 1 LYS A 316 -7.76 -58.05 REMARK 500 1 GLU A 325 39.33 -143.90 REMARK 500 1 TYR A 326 63.15 37.39 REMARK 500 1 ARG A 327 -19.19 -35.65 REMARK 500 1 PHE A 328 69.65 -115.50 REMARK 500 1 THR A 333 38.08 -152.21 REMARK 500 1 GLN A 334 -160.40 -160.55 REMARK 500 1 LEU A 349 38.58 -88.83 REMARK 500 1 LYS A 354 -8.57 -59.65 REMARK 500 1 ASN A 355 33.14 -153.81 REMARK 500 1 THR A 365 -164.19 -172.17 REMARK 500 1 SER A 368 88.17 -150.48 REMARK 500 1 ARG A 378 53.73 -101.64 REMARK 500 1 ALA A 383 -46.55 80.15 REMARK 500 1 PRO A 388 2.78 -65.82 REMARK 500 1 GLN A 391 45.58 -144.61 REMARK 500 1 VAL A 392 -95.82 -84.54 REMARK 500 1 SER A 406 -163.46 -77.24 REMARK 500 1 ALA A 422 -35.43 178.93 REMARK 500 1 LYS A 428 -139.59 -82.44 REMARK 500 1 ASN A 431 -59.63 -19.11 REMARK 500 1 PHE A 436 54.14 -101.91 REMARK 500 2 ASP A 278 114.00 67.81 REMARK 500 2 PHE A 280 38.31 -87.47 REMARK 500 2 PRO A 284 -160.90 -79.17 REMARK 500 2 LYS A 285 154.06 -47.94 REMARK 500 2 TYR A 297 -73.13 -44.65 REMARK 500 2 VAL A 305 -66.92 -120.10 REMARK 500 2 GLU A 312 -65.99 -91.02 REMARK 500 2 PHE A 314 -103.97 -64.29 REMARK 500 2 ASP A 315 48.22 174.43 REMARK 500 2 LYS A 316 -6.31 -57.89 REMARK 500 2 GLU A 325 64.32 -150.63 REMARK 500 2 TYR A 326 64.12 26.23 REMARK 500 2 PHE A 328 73.36 -108.75 REMARK 500 2 THR A 333 36.54 -148.96 REMARK 500 2 GLN A 334 99.74 -172.53 REMARK 500 2 LYS A 351 11.65 -66.88 REMARK 500 2 ALA A 383 -49.25 79.05 REMARK 500 2 TRP A 390 59.75 -105.14 REMARK 500 2 GLN A 391 52.26 -143.05 REMARK 500 2 VAL A 392 -87.62 -95.61 REMARK 500 2 SER A 406 -164.21 -104.01 REMARK 500 REMARK 500 THIS ENTRY HAS 462 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 430 ASN A 431 1 -149.91 REMARK 500 GLY A 318 TRP A 319 2 142.98 REMARK 500 GLY A 318 TRP A 319 4 142.30 REMARK 500 GLY A 318 TRP A 319 5 148.64 REMARK 500 SER A 369 SER A 370 7 149.03 REMARK 500 PHE A 430 ASN A 431 7 -149.41 REMARK 500 GLY A 318 TRP A 319 8 142.29 REMARK 500 PHE A 430 ASN A 431 9 -145.42 REMARK 500 ALA A 276 LYS A 277 10 138.45 REMARK 500 GLU A 420 GLY A 421 11 -137.57 REMARK 500 GLU A 420 GLY A 421 13 -149.23 REMARK 500 PHE A 430 ASN A 431 13 -149.22 REMARK 500 HIS A 313 PHE A 314 14 -134.25 REMARK 500 PHE A 430 ASN A 431 14 -144.04 REMARK 500 PHE A 430 ASN A 431 16 -143.59 REMARK 500 PHE A 430 ASN A 431 17 -147.48 REMARK 500 PRO A 284 LYS A 285 18 149.71 REMARK 500 GLY A 364 THR A 365 20 -147.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 326 0.08 SIDE CHAIN REMARK 500 1 ARG A 327 0.10 SIDE CHAIN REMARK 500 1 PHE A 357 0.08 SIDE CHAIN REMARK 500 1 ARG A 378 0.09 SIDE CHAIN REMARK 500 1 TYR A 416 0.08 SIDE CHAIN REMARK 500 3 ARG A 295 0.10 SIDE CHAIN REMARK 500 3 ARG A 348 0.11 SIDE CHAIN REMARK 500 3 ARG A 400 0.10 SIDE CHAIN REMARK 500 4 PHE A 310 0.08 SIDE CHAIN REMARK 500 4 ARG A 414 0.10 SIDE CHAIN REMARK 500 5 TYR A 326 0.09 SIDE CHAIN REMARK 500 6 ARG A 327 0.09 SIDE CHAIN REMARK 500 7 ARG A 295 0.13 SIDE CHAIN REMARK 500 7 TYR A 309 0.07 SIDE CHAIN REMARK 500 7 ARG A 353 0.12 SIDE CHAIN REMARK 500 10 ARG A 378 0.08 SIDE CHAIN REMARK 500 10 TYR A 416 0.07 SIDE CHAIN REMARK 500 11 TYR A 326 0.07 SIDE CHAIN REMARK 500 13 TYR A 326 0.10 SIDE CHAIN REMARK 500 13 ARG A 400 0.09 SIDE CHAIN REMARK 500 13 TYR A 416 0.10 SIDE CHAIN REMARK 500 14 TYR A 323 0.06 SIDE CHAIN REMARK 500 14 ARG A 378 0.09 SIDE CHAIN REMARK 500 14 TYR A 416 0.09 SIDE CHAIN REMARK 500 16 ARG A 295 0.08 SIDE CHAIN REMARK 500 16 TYR A 323 0.07 SIDE CHAIN REMARK 500 16 TYR A 326 0.09 SIDE CHAIN REMARK 500 16 ARG A 348 0.08 SIDE CHAIN REMARK 500 16 ARG A 353 0.09 SIDE CHAIN REMARK 500 17 ARG A 353 0.09 SIDE CHAIN REMARK 500 17 TYR A 416 0.10 SIDE CHAIN REMARK 500 18 TYR A 326 0.08 SIDE CHAIN REMARK 500 18 ARG A 353 0.14 SIDE CHAIN REMARK 500 19 TYR A 323 0.08 SIDE CHAIN REMARK 500 19 TYR A 326 0.09 SIDE CHAIN REMARK 500 19 ARG A 327 0.08 SIDE CHAIN REMARK 500 20 ARG A 295 0.08 SIDE CHAIN REMARK 500 20 TYR A 326 0.08 SIDE CHAIN REMARK 500 20 ARG A 378 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5628 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS DBREF 1PBU A 276 437 UNP P26641 EF1G_HUMAN 276 437 SEQADV 1PBU ALA A 289 UNP P26641 VAL 289 ENGINEERED MUTATION SEQRES 1 A 162 ALA LYS ASP PRO PHE ALA HIS LEU PRO LYS SER THR PHE SEQRES 2 A 162 ALA LEU ASP GLU PHE LYS ARG LYS TYR SER ASN GLU ASP SEQRES 3 A 162 THR LEU SER VAL ALA LEU PRO TYR PHE TRP GLU HIS PHE SEQRES 4 A 162 ASP LYS ASP GLY TRP SER LEU TRP TYR SER GLU TYR ARG SEQRES 5 A 162 PHE PRO GLU GLU LEU THR GLN THR PHE MET SER CYS ASN SEQRES 6 A 162 LEU ILE THR GLY MET PHE GLN ARG LEU ASP LYS LEU ARG SEQRES 7 A 162 LYS ASN ALA PHE ALA SER VAL ILE LEU PHE GLY THR ASN SEQRES 8 A 162 ASN SER SER SER ILE SER GLY VAL TRP VAL PHE ARG GLY SEQRES 9 A 162 GLN GLU LEU ALA PHE PRO LEU SER PRO ASP TRP GLN VAL SEQRES 10 A 162 ASP TYR GLU SER TYR THR TRP ARG LYS LEU ASP PRO GLY SEQRES 11 A 162 SER GLU GLU THR GLN THR LEU VAL ARG GLU TYR PHE SER SEQRES 12 A 162 TRP GLU GLY ALA PHE GLN HIS VAL GLY LYS ALA PHE ASN SEQRES 13 A 162 GLN GLY LYS ILE PHE LYS HELIX 1 1 ASP A 278 HIS A 282 5 5 HELIX 2 2 ALA A 289 GLU A 300 1 12 HELIX 3 3 ASP A 301 SER A 304 5 4 HELIX 4 4 VAL A 305 GLU A 312 1 8 HELIX 5 5 PHE A 328 LEU A 332 5 5 HELIX 6 6 MET A 337 LEU A 349 1 13 HELIX 7 7 ASP A 350 LYS A 354 5 5 HELIX 8 8 ALA A 383 GLN A 391 5 9 HELIX 9 9 ASP A 393 TYR A 397 5 5 HELIX 10 10 GLU A 407 TRP A 419 1 13 SHEET 1 A 4 ALA A 356 ALA A 358 0 SHEET 2 A 4 SER A 370 PHE A 377 -1 O VAL A 376 N PHE A 357 SHEET 3 A 4 SER A 320 SER A 324 -1 N SER A 324 O GLY A 373 SHEET 4 A 4 ARG A 400 LYS A 401 -1 O ARG A 400 N TYR A 323 SHEET 1 B 4 ALA A 356 ALA A 358 0 SHEET 2 B 4 SER A 370 PHE A 377 -1 O VAL A 376 N PHE A 357 SHEET 3 B 4 ILE A 361 PHE A 363 -1 N PHE A 363 O SER A 370 SHEET 4 B 4 GLN A 432 GLY A 433 -1 O GLN A 432 N LEU A 362 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1