HEADER ELECTRON TRANSPORT (CU BINDING PROTEIN) 15-SEP-80 1PCY OBSLTE 31-OCT-93 1PCY 1PLC TITLE STRUCTURE OF OXIDIZED POPLAR PLASTOCYANIN AT 1.6 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS ELECTRON TRANSPORT (CU BINDING PROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GUSS,H.C.FREEMAN REVDAT 8 31-OCT-93 1PCY 3 OBSLTE REVDAT 7 15-JAN-91 1PCY 1 COMPND REMARK HET REVDAT 6 17-JUL-84 1PCY 1 COMPND REVDAT 5 27-OCT-83 1PCY 1 JRNL REVDAT 4 30-SEP-83 1PCY 1 REVDAT REVDAT 3 07-MAR-83 1PCY 2 CONECT REVDAT 2 05-NOV-80 1PCY 3 SCALE REVDAT 1 21-OCT-80 1PCY 0 JRNL AUTH J.M.GUSS,H.C.FREEMAN JRNL TITL STRUCTURE OF OXIDIZED POPLAR PLASTOCYANIN AT 1.6 JRNL TITL 2 ANGSTROMS RESOLUTION JRNL REF J.MOL.BIOL. V. 169 521 1983 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.M.COLMAN,H.C.FREEMAN,J.M.GUSS,M.MURATA, REMARK 1 AUTH 2 V.A.NORRIS,J.A.M.RAMSHAW,M.P.VENKATAPPA REMARK 1 TITL X-RAY CRYSTAL STRUCTURE ANALYSIS OF PLASTOCYANIN REMARK 1 TITL 2 AT 2.7 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 272 319 1978 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.V.CHAPMAN,P.M.COLMAN,H.C.FREEMAN,J.M.GUSS, REMARK 1 AUTH 2 M.MURATA,V.A.NORRIS,J.A.M.RAMSHAW,M.P.VENKATAPPA REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA FOR A REMARK 1 TITL 2 COPPER-CONTAINING PROTEIN, PLASTOCYANIN REMARK 1 REF J.MOL.BIOL. V. 110 187 1977 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PCY COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1PCY THE NINE-STRANDED SHEET DESCRIBED BELOW IS ACTUALLY AN REMARK 5 1PCY EIGHT-STRANDED BETA BARREL. THIS IS DENOTED BY THE REMARK 5 FIRST 1PCY STRAND RECURRING AS THE LAST STRAND. STRAND 8 IS REMARK 5 ADJACENT 1PCY TO STRAND 9 (STRAND 1) BUT THERE ARE NO REMARK 5 INTERSTRAND 1PCY H-BONDS. THE STRANDS OF THE BETA-BARREL REMARK 5 NUMBERED 1, 2, 3, 1PCY 4, 5, 6, 7, 8 AND 9 CORRESPOND TO REMARK 5 THE STRANDS 5, 4, 7, 8, 1PCY 2, 1, 3, 6 AND 5 AS USED BY REMARK 5 THE AUTHORS IN REFERENCE 1 1PCY ABOVE. 1PCY REMARK 6 REMARK 6 1PCY CORRECTION. FIX (1,1) ELEMENT OF SCALE MATRIX. 05-NOV- REMARK 6 80. 1PCY REMARK 7 REMARK 7 1PCY CORRECTION PUT CONECT RECORDS IN ASCENDING ORDER. 1PCY REMARK 7 07-MAR-83. 1PCY REMARK 8 REMARK 8 1PCY CORRECTION. INSERT REVDAT RECORDS. 30-SEP-83. 1PCY REMARK 9 REMARK 9 1PCY CORRECTION. INSERT JRNL REFERENCE. 27-OCT-83. 1PCY REMARK 10 REMARK 10 1PCY CORRECTION. ADD INFORMATION TO COMPND RECORD. 17-JUL- REMARK 10 84. 1PCY REMARK 11 REMARK 11 1PCY CORRECTION. STANDARDIZE NOMENCLATURE FOR CU2+. 15-JAN- REMARK 11 91. 1PCY REMARK 12 REMARK 12 1PCY CORRECTION. THIS ENTRY IS OBSOLETE. 31-OCT-93. 1PCY REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 SEQRES 1 99 ILE ASP VAL LEU LEU GLY ALA ASP ASP GLY SER LEU ALA SEQRES 2 99 PHE VAL PRO SER GLU PHE SER ILE SER PRO GLY GLU LYS SEQRES 3 99 ILE VAL PHE LYS ASN ASN ALA GLY PHE PRO HIS ASN ILE SEQRES 4 99 VAL PHE ASP GLU ASP SER ILE PRO SER GLY VAL ASP ALA SEQRES 5 99 SER LYS ILE SER MET SER GLU GLU ASP LEU LEU ASN ALA SEQRES 6 99 LYS GLY GLU THR PHE GLU VAL ALA LEU SER ASN LYS GLY SEQRES 7 99 GLU TYR SER PHE TYR CYS SER PRO HIS GLN GLY ALA GLY SEQRES 8 99 MET VAL GLY LYS VAL THR VAL ASN FTNOTE 1 RESIDUES 16 AND 36 ARE CIS-PROLINES. HET CU 1 1 HETNAM CU COPPER (II) ION FORMUL 2 CU CU 2+ FORMUL 3 HOH *44(H2 O1) HELIX 1 A ALA 52 SER 56 1ONLY TURN OF HELIX IN MOLCULE 5 SHEET 1 S 9 MET 57 LEU 63 0 SHEET 2 S 9 HIS 37 SER 45 -1 N HIS 37 O LEU 63 SHEET 3 S 9 GLY 78 HIS 87 -1 N TYR 83 O VAL 40 SHEET 4 S 9 MET 92 ASN 99 -1 O MET 92 N CYS 84 SHEET 5 S 9 SER 11 ILE 21 1 O SER 17 N LYS 95 SHEET 6 S 9 ILE 1 ALA 7 -1 N LEU 4 O VAL 15 SHEET 7 S 9 LYS 26 ALA 33 1 O LYS 26 N ILE 1 SHEET 8 S 9 GLY 67 LEU 74 -1 O GLU 68 N ASN 31 SHEET 9 S 9 MET 57 LEU 63 -1 TURN 1 T1 ALA 7 GLY 10 TURN 2 T2 PHE 14 SER 17 CIS-PRO AT 16 TURN 3 T3 SER 22 GLU 25 NO H-BOND (OPEN TURN) TURN 4 T4 ASP 42 SER 45 TURN 5 T5 PRO 47 VAL 50 TURN 6 T6 SER 58 ASP 61 NO H-BOND (OPEN TURN) TURN 7 T7 ALA 65 GLU 68 TURN 8 T8 CYS 84 HIS 87 NO H-BOND (OPEN TURN) TURN 9 T9 GLN 88 GLY 91 CISPEP 1 VAL 15 PRO 16 0 -17.34 CISPEP 2 PHE 35 PRO 36 0 12.15 CRYST1 29.610 46.860 57.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 0.033772 0.000000 0.000000 0.00000 ORIGX2 0.000000 0.021340 0.000000 0.00000 ORIGX3 0.000000 0.000000 0.017361 0.00000 SCALE1 0.033772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017361 0.00000