data_1PD3 # _entry.id 1PD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PD3 pdb_00001pd3 10.2210/pdb1pd3/pdb RCSB RCSB019242 ? ? WWPDB D_1000019242 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-16 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PD3 _pdbx_database_status.recvd_initial_deposition_date 2003-05-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Baudin, F.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of the M1 protein-binding domain of the influenza A virus nuclear export protein (NEP/NS2).' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 22 _citation.page_first 4646 _citation.page_last 4655 _citation.year 2003 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12970177 _citation.pdbx_database_id_DOI 10.1093/emboj/cdg449 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Akarsu, H.' 1 ? primary 'Burmeister, W.P.' 2 ? primary 'Petosa, C.' 3 ? primary 'Petit, I.' 4 ? primary 'Muller, C.W.' 5 ? primary 'Ruigrok, R.W.' 6 ? primary 'Baudin, F.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Nonstructural protein NS2' _entity.formula_weight 7241.248 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Residues 59-116' _entity.details 'M1-binding domain of NEP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QNRNGKWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIRTF _entity_poly.pdbx_seq_one_letter_code_can QNRNGKWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIRTF _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASN n 1 3 ARG n 1 4 ASN n 1 5 GLY n 1 6 LYS n 1 7 TRP n 1 8 ARG n 1 9 GLU n 1 10 GLN n 1 11 LEU n 1 12 GLY n 1 13 GLN n 1 14 LYS n 1 15 PHE n 1 16 GLU n 1 17 GLU n 1 18 ILE n 1 19 ARG n 1 20 TRP n 1 21 LEU n 1 22 ILE n 1 23 GLU n 1 24 GLU n 1 25 VAL n 1 26 ARG n 1 27 HIS n 1 28 ARG n 1 29 LEU n 1 30 LYS n 1 31 ILE n 1 32 THR n 1 33 GLU n 1 34 ASN n 1 35 SER n 1 36 PHE n 1 37 GLU n 1 38 GLN n 1 39 ILE n 1 40 THR n 1 41 PHE n 1 42 MET n 1 43 GLN n 1 44 ALA n 1 45 LEU n 1 46 GLN n 1 47 LEU n 1 48 LEU n 1 49 LEU n 1 50 GLU n 1 51 VAL n 1 52 GLU n 1 53 GLN n 1 54 GLU n 1 55 ILE n 1 56 ARG n 1 57 THR n 1 58 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'Influenzavirus A' _entity_src_gen.pdbx_gene_src_gene NS2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Influenza A virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11320 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 59 ? ? ? A . n A 1 2 ASN 2 60 ? ? ? A . n A 1 3 ARG 3 61 ? ? ? A . n A 1 4 ASN 4 62 ? ? ? A . n A 1 5 GLY 5 63 63 GLY GLY A . n A 1 6 LYS 6 64 64 LYS LYS A . n A 1 7 TRP 7 65 65 TRP TRP A . n A 1 8 ARG 8 66 66 ARG ARG A . n A 1 9 GLU 9 67 67 GLU GLU A . n A 1 10 GLN 10 68 68 GLN GLN A . n A 1 11 LEU 11 69 69 LEU LEU A . n A 1 12 GLY 12 70 70 GLY GLY A . n A 1 13 GLN 13 71 71 GLN GLN A . n A 1 14 LYS 14 72 72 LYS LYS A . n A 1 15 PHE 15 73 73 PHE PHE A . n A 1 16 GLU 16 74 74 GLU GLU A . n A 1 17 GLU 17 75 75 GLU GLU A . n A 1 18 ILE 18 76 76 ILE ILE A . n A 1 19 ARG 19 77 77 ARG ARG A . n A 1 20 TRP 20 78 78 TRP TRP A . n A 1 21 LEU 21 79 79 LEU LEU A . n A 1 22 ILE 22 80 80 ILE ILE A . n A 1 23 GLU 23 81 81 GLU GLU A . n A 1 24 GLU 24 82 82 GLU GLU A . n A 1 25 VAL 25 83 83 VAL VAL A . n A 1 26 ARG 26 84 84 ARG ARG A . n A 1 27 HIS 27 85 85 HIS HIS A . n A 1 28 ARG 28 86 86 ARG ARG A . n A 1 29 LEU 29 87 87 LEU LEU A . n A 1 30 LYS 30 88 88 LYS LYS A . n A 1 31 ILE 31 89 89 ILE ILE A . n A 1 32 THR 32 90 90 THR THR A . n A 1 33 GLU 33 91 91 GLU GLU A . n A 1 34 ASN 34 92 92 ASN ASN A . n A 1 35 SER 35 93 93 SER SER A . n A 1 36 PHE 36 94 94 PHE PHE A . n A 1 37 GLU 37 95 95 GLU GLU A . n A 1 38 GLN 38 96 96 GLN GLN A . n A 1 39 ILE 39 97 97 ILE ILE A . n A 1 40 THR 40 98 98 THR THR A . n A 1 41 PHE 41 99 99 PHE PHE A . n A 1 42 MET 42 100 100 MET MET A . n A 1 43 GLN 43 101 101 GLN GLN A . n A 1 44 ALA 44 102 102 ALA ALA A . n A 1 45 LEU 45 103 103 LEU LEU A . n A 1 46 GLN 46 104 104 GLN GLN A . n A 1 47 LEU 47 105 105 LEU LEU A . n A 1 48 LEU 48 106 106 LEU LEU A . n A 1 49 LEU 49 107 107 LEU LEU A . n A 1 50 GLU 50 108 108 GLU GLU A . n A 1 51 VAL 51 109 109 VAL VAL A . n A 1 52 GLU 52 110 110 GLU GLU A . n A 1 53 GLN 53 111 111 GLN GLN A . n A 1 54 GLU 54 112 112 GLU GLU A . n A 1 55 ILE 55 113 113 ILE ILE A . n A 1 56 ARG 56 114 114 ARG ARG A . n A 1 57 THR 57 115 115 THR THR A . n A 1 58 PHE 58 116 116 PHE PHE A . n B 1 1 GLN 1 59 ? ? ? B . n B 1 2 ASN 2 60 ? ? ? B . n B 1 3 ARG 3 61 ? ? ? B . n B 1 4 ASN 4 62 ? ? ? B . n B 1 5 GLY 5 63 63 GLY GLY B . n B 1 6 LYS 6 64 64 LYS LYS B . n B 1 7 TRP 7 65 65 TRP TRP B . n B 1 8 ARG 8 66 66 ARG ARG B . n B 1 9 GLU 9 67 67 GLU GLU B . n B 1 10 GLN 10 68 68 GLN GLN B . n B 1 11 LEU 11 69 69 LEU LEU B . n B 1 12 GLY 12 70 70 GLY GLY B . n B 1 13 GLN 13 71 71 GLN GLN B . n B 1 14 LYS 14 72 72 LYS LYS B . n B 1 15 PHE 15 73 73 PHE PHE B . n B 1 16 GLU 16 74 74 GLU GLU B . n B 1 17 GLU 17 75 75 GLU GLU B . n B 1 18 ILE 18 76 76 ILE ILE B . n B 1 19 ARG 19 77 77 ARG ARG B . n B 1 20 TRP 20 78 78 TRP TRP B . n B 1 21 LEU 21 79 79 LEU LEU B . n B 1 22 ILE 22 80 80 ILE ILE B . n B 1 23 GLU 23 81 81 GLU GLU B . n B 1 24 GLU 24 82 82 GLU GLU B . n B 1 25 VAL 25 83 83 VAL VAL B . n B 1 26 ARG 26 84 84 ARG ARG B . n B 1 27 HIS 27 85 85 HIS HIS B . n B 1 28 ARG 28 86 86 ARG ARG B . n B 1 29 LEU 29 87 87 LEU LEU B . n B 1 30 LYS 30 88 88 LYS LYS B . n B 1 31 ILE 31 89 89 ILE ILE B . n B 1 32 THR 32 90 90 THR THR B . n B 1 33 GLU 33 91 91 GLU GLU B . n B 1 34 ASN 34 92 92 ASN ASN B . n B 1 35 SER 35 93 93 SER SER B . n B 1 36 PHE 36 94 94 PHE PHE B . n B 1 37 GLU 37 95 95 GLU GLU B . n B 1 38 GLN 38 96 96 GLN GLN B . n B 1 39 ILE 39 97 97 ILE ILE B . n B 1 40 THR 40 98 98 THR THR B . n B 1 41 PHE 41 99 99 PHE PHE B . n B 1 42 MET 42 100 100 MET MET B . n B 1 43 GLN 43 101 101 GLN GLN B . n B 1 44 ALA 44 102 102 ALA ALA B . n B 1 45 LEU 45 103 103 LEU LEU B . n B 1 46 GLN 46 104 104 GLN GLN B . n B 1 47 LEU 47 105 105 LEU LEU B . n B 1 48 LEU 48 106 106 LEU LEU B . n B 1 49 LEU 49 107 107 LEU LEU B . n B 1 50 GLU 50 108 108 GLU GLU B . n B 1 51 VAL 51 109 109 VAL VAL B . n B 1 52 GLU 52 110 110 GLU GLU B . n B 1 53 GLN 53 111 111 GLN GLN B . n B 1 54 GLU 54 112 112 GLU GLU B . n B 1 55 ILE 55 113 113 ILE ILE B . n B 1 56 ARG 56 114 114 ARG ARG B . n B 1 57 THR 57 115 115 THR THR B . n B 1 58 PHE 58 116 116 PHE PHE B . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 SOLVE phasing . ? 4 # _cell.entry_id 1PD3 _cell.length_a 82.691 _cell.length_b 82.691 _cell.length_c 61.111 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PD3 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 1PD3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.62 _exptl_crystal.density_percent_sol 73.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;PROTEIN IN 20 MM TRIS-HCL PH7.5, 150 MM NACL, HANGING DROP METHOD, ROOM TEMPERATURE, vapor diffusion, hanging drop, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-09-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1PD3 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.6 _reflns.d_resolution_high 2.60 _reflns.number_obs 7302 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value 0.09 _reflns.pdbx_netI_over_sigmaI 6.0 _reflns.B_iso_Wilson_estimate 48.47 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value 0.32 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1PD3 _refine.ls_number_reflns_obs 6962 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.88 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 340 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 43.46 _refine.aniso_B[1][1] 3.60000 _refine.aniso_B[2][2] 3.60000 _refine.aniso_B[3][3] -5.40000 _refine.aniso_B[1][2] 1.80000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.269 _refine.pdbx_overall_ESU_R_Free 0.244 _refine.overall_SU_ML 0.162 _refine.overall_SU_B 7.689 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 948 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 948 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 19.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.043 0.021 ? 964 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.302 1.933 ? 1290 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.127 5.000 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.188 0.200 ? 138 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.013 0.020 ? 718 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.268 0.200 ? 424 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.263 0.200 ? 31 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.323 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.695 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.773 1.500 ? 534 'X-RAY DIFFRACTION' ? r_mcangle_it 3.534 2.000 ? 864 'X-RAY DIFFRACTION' ? r_scbond_it 5.826 3.000 ? 430 'X-RAY DIFFRACTION' ? r_scangle_it 9.585 4.500 ? 426 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.67 _refine_ls_shell.number_reflns_R_work 465 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1PD3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1PD3 _struct.title 'Influenza A NEP M1-binding domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PD3 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'influenza virus A, NEP/NS2, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VNS2_IAPUE _struct_ref.pdbx_db_accession P03508 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDPNTVSSFQDILMRMSKMQLGSSSEDLNGIITQFESLKLYRDSLGKAVMRMGDLHSLQNRNGKWREQLGQKFEEIRWLI EEVRHRLKITENSFEQITFMQALQLLLEVEQEIRTFSFQLI ; _struct_ref.pdbx_align_begin 59 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PD3 A 1 ? 58 ? P03508 59 ? 116 ? 59 116 2 1 1PD3 B 1 ? 58 ? P03508 59 ? 116 ? 59 116 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA,PQS dimeric 2 4 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 2540 ? 3 MORE -25 ? 3 'SSA (A^2)' 6970 ? 4 'ABSA (A^2)' 2440 ? 4 MORE -6 ? 4 'SSA (A^2)' 7070 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 2 1 B 3 1 A,B 4 1 A 4 2 B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_654 -y+1,x-y,z-1/3 -0.5000000000 -0.8660254038 0.0000000000 82.6910000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -20.3703333333 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 2 SER A 35 ? PHE A 58 ? SER A 93 PHE A 116 1 ? 24 HELX_P HELX_P2 3 LYS B 6 ? LEU B 29 ? LYS B 64 LEU B 87 1 ? 24 HELX_P HELX_P3 4 SER B 35 ? THR B 57 ? SER B 93 THR B 115 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 111 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 114 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 81 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 81 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_654 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 67 ? ? OE2 A GLU 67 ? ? 1.340 1.252 0.088 0.011 N 2 1 CG A GLN 71 ? ? CD A GLN 71 ? ? 1.716 1.506 0.210 0.023 N 3 1 CG A ARG 86 ? ? CD A ARG 86 ? ? 1.310 1.515 -0.205 0.025 N 4 1 CG A GLU 91 ? ? CD A GLU 91 ? ? 1.638 1.515 0.123 0.015 N 5 1 CD A GLU 91 ? ? OE1 A GLU 91 ? ? 1.333 1.252 0.081 0.011 N 6 1 CD A GLU 95 ? ? OE1 A GLU 95 ? ? 1.323 1.252 0.071 0.011 N 7 1 CA A ILE 113 ? ? CB A ILE 113 ? ? 1.398 1.544 -0.146 0.023 N 8 1 CB B TRP 65 ? ? CG B TRP 65 ? ? 1.630 1.498 0.132 0.018 N 9 1 CD B GLU 74 ? ? OE1 B GLU 74 ? ? 1.320 1.252 0.068 0.011 N 10 1 CD B GLU 81 ? ? OE2 B GLU 81 ? ? 1.179 1.252 -0.073 0.011 N 11 1 CD B GLU 91 ? ? OE1 B GLU 91 ? ? 1.321 1.252 0.069 0.011 N 12 1 CD B GLU 95 ? ? OE1 B GLU 95 ? ? 1.323 1.252 0.071 0.011 N 13 1 CD B GLU 110 ? ? OE1 B GLU 110 ? ? 1.342 1.252 0.090 0.011 N 14 1 CG B GLN 111 ? ? CD B GLN 111 ? ? 1.332 1.506 -0.174 0.023 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 77 ? ? NE A ARG 77 ? ? CZ A ARG 77 ? ? 132.18 123.60 8.58 1.40 N 2 1 NE A ARG 77 ? ? CZ A ARG 77 ? ? NH2 A ARG 77 ? ? 114.49 120.30 -5.81 0.50 N 3 1 CB A ILE 80 ? ? CG1 A ILE 80 ? ? CD1 A ILE 80 ? ? 92.67 113.90 -21.23 2.80 N 4 1 CG1 A VAL 83 ? ? CB A VAL 83 ? ? CG2 A VAL 83 ? ? 99.49 110.90 -11.41 1.60 N 5 1 NE A ARG 84 ? ? CZ A ARG 84 ? ? NH1 A ARG 84 ? ? 123.67 120.30 3.37 0.50 N 6 1 NE A ARG 84 ? ? CZ A ARG 84 ? ? NH2 A ARG 84 ? ? 116.28 120.30 -4.02 0.50 N 7 1 OE1 A GLU 95 ? ? CD A GLU 95 ? ? OE2 A GLU 95 ? ? 131.75 123.30 8.45 1.20 N 8 1 CB A LEU 105 ? ? CG A LEU 105 ? ? CD2 A LEU 105 ? ? 98.22 111.00 -12.78 1.70 N 9 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH1 A ARG 114 ? ? 115.73 120.30 -4.57 0.50 N 10 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH2 A ARG 114 ? ? 123.34 120.30 3.04 0.50 N 11 1 NE B ARG 66 ? ? CZ B ARG 66 ? ? NH1 B ARG 66 ? ? 117.13 120.30 -3.17 0.50 N 12 1 CA B LEU 79 ? ? CB B LEU 79 ? ? CG B LEU 79 ? ? 130.99 115.30 15.69 2.30 N 13 1 CA B GLU 81 ? ? CB B GLU 81 ? ? CG B GLU 81 ? ? 97.66 113.40 -15.74 2.20 N 14 1 NE B ARG 84 ? ? CZ B ARG 84 ? ? NH1 B ARG 84 ? ? 124.01 120.30 3.71 0.50 N 15 1 NE B ARG 84 ? ? CZ B ARG 84 ? ? NH2 B ARG 84 ? ? 114.24 120.30 -6.06 0.50 N 16 1 OE1 B GLU 95 ? ? CD B GLU 95 ? ? OE2 B GLU 95 ? ? 131.35 123.30 8.05 1.20 N 17 1 CB B LEU 105 ? ? CG B LEU 105 ? ? CD2 B LEU 105 ? ? 100.72 111.00 -10.28 1.70 N 18 1 CA B GLN 111 ? ? CB B GLN 111 ? ? CG B GLN 111 ? ? 98.16 113.40 -15.24 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 64 ? ? -57.64 -3.91 2 1 THR B 115 ? ? -80.74 -76.61 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 36.6153 18.4943 4.9896 0.0327 0.0280 0.0236 -0.0120 -0.0048 0.0111 0.0996 1.3060 0.6619 -0.2799 0.0405 -0.1202 -0.0383 -0.0023 -0.0079 0.0006 0.1224 0.0721 0.0388 -0.1670 -0.0841 'X-RAY DIFFRACTION' 2 ? refined 47.3771 20.6452 5.0394 0.0421 0.0154 0.0273 -0.0155 0.0185 -0.0053 0.0008 3.2932 0.6734 1.0704 -0.0705 0.5890 0.0109 -0.0514 -0.0220 0.0082 0.0253 -0.0863 0.0180 0.0570 -0.0362 'X-RAY DIFFRACTION' 3 ? refined 47.4080 20.0384 14.9174 0.0261 0.0456 0.0150 0.0200 -0.0044 -0.0171 -0.1333 1.4824 1.1298 -0.2254 -0.3547 0.4416 -0.0725 -0.0359 0.0596 0.0724 0.1654 -0.0756 0.0693 0.1950 -0.0929 'X-RAY DIFFRACTION' 4 ? refined 36.5085 18.8888 14.8256 0.0311 0.0176 0.0362 0.0233 0.0064 0.0072 -0.4309 0.4878 1.4857 -0.3359 0.4239 -0.0056 0.0397 0.0376 -0.0178 0.0276 0.0429 0.0323 0.0787 -0.0980 -0.0826 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 63 A 29 87 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 35 93 A 58 116 ? A A 'X-RAY DIFFRACTION' ? 3 3 B 5 63 B 29 87 ? B B 'X-RAY DIFFRACTION' ? 4 4 B 35 93 B 58 116 ? B B 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 59 ? A GLN 1 2 1 Y 1 A ASN 60 ? A ASN 2 3 1 Y 1 A ARG 61 ? A ARG 3 4 1 Y 1 A ASN 62 ? A ASN 4 5 1 Y 1 B GLN 59 ? B GLN 1 6 1 Y 1 B ASN 60 ? B ASN 2 7 1 Y 1 B ARG 61 ? B ARG 3 8 1 Y 1 B ASN 62 ? B ASN 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 HIS N N N N 107 HIS CA C N S 108 HIS C C N N 109 HIS O O N N 110 HIS CB C N N 111 HIS CG C Y N 112 HIS ND1 N Y N 113 HIS CD2 C Y N 114 HIS CE1 C Y N 115 HIS NE2 N Y N 116 HIS OXT O N N 117 HIS H H N N 118 HIS H2 H N N 119 HIS HA H N N 120 HIS HB2 H N N 121 HIS HB3 H N N 122 HIS HD1 H N N 123 HIS HD2 H N N 124 HIS HE1 H N N 125 HIS HE2 H N N 126 HIS HXT H N N 127 ILE N N N N 128 ILE CA C N S 129 ILE C C N N 130 ILE O O N N 131 ILE CB C N S 132 ILE CG1 C N N 133 ILE CG2 C N N 134 ILE CD1 C N N 135 ILE OXT O N N 136 ILE H H N N 137 ILE H2 H N N 138 ILE HA H N N 139 ILE HB H N N 140 ILE HG12 H N N 141 ILE HG13 H N N 142 ILE HG21 H N N 143 ILE HG22 H N N 144 ILE HG23 H N N 145 ILE HD11 H N N 146 ILE HD12 H N N 147 ILE HD13 H N N 148 ILE HXT H N N 149 LEU N N N N 150 LEU CA C N S 151 LEU C C N N 152 LEU O O N N 153 LEU CB C N N 154 LEU CG C N N 155 LEU CD1 C N N 156 LEU CD2 C N N 157 LEU OXT O N N 158 LEU H H N N 159 LEU H2 H N N 160 LEU HA H N N 161 LEU HB2 H N N 162 LEU HB3 H N N 163 LEU HG H N N 164 LEU HD11 H N N 165 LEU HD12 H N N 166 LEU HD13 H N N 167 LEU HD21 H N N 168 LEU HD22 H N N 169 LEU HD23 H N N 170 LEU HXT H N N 171 LYS N N N N 172 LYS CA C N S 173 LYS C C N N 174 LYS O O N N 175 LYS CB C N N 176 LYS CG C N N 177 LYS CD C N N 178 LYS CE C N N 179 LYS NZ N N N 180 LYS OXT O N N 181 LYS H H N N 182 LYS H2 H N N 183 LYS HA H N N 184 LYS HB2 H N N 185 LYS HB3 H N N 186 LYS HG2 H N N 187 LYS HG3 H N N 188 LYS HD2 H N N 189 LYS HD3 H N N 190 LYS HE2 H N N 191 LYS HE3 H N N 192 LYS HZ1 H N N 193 LYS HZ2 H N N 194 LYS HZ3 H N N 195 LYS HXT H N N 196 MET N N N N 197 MET CA C N S 198 MET C C N N 199 MET O O N N 200 MET CB C N N 201 MET CG C N N 202 MET SD S N N 203 MET CE C N N 204 MET OXT O N N 205 MET H H N N 206 MET H2 H N N 207 MET HA H N N 208 MET HB2 H N N 209 MET HB3 H N N 210 MET HG2 H N N 211 MET HG3 H N N 212 MET HE1 H N N 213 MET HE2 H N N 214 MET HE3 H N N 215 MET HXT H N N 216 PHE N N N N 217 PHE CA C N S 218 PHE C C N N 219 PHE O O N N 220 PHE CB C N N 221 PHE CG C Y N 222 PHE CD1 C Y N 223 PHE CD2 C Y N 224 PHE CE1 C Y N 225 PHE CE2 C Y N 226 PHE CZ C Y N 227 PHE OXT O N N 228 PHE H H N N 229 PHE H2 H N N 230 PHE HA H N N 231 PHE HB2 H N N 232 PHE HB3 H N N 233 PHE HD1 H N N 234 PHE HD2 H N N 235 PHE HE1 H N N 236 PHE HE2 H N N 237 PHE HZ H N N 238 PHE HXT H N N 239 SER N N N N 240 SER CA C N S 241 SER C C N N 242 SER O O N N 243 SER CB C N N 244 SER OG O N N 245 SER OXT O N N 246 SER H H N N 247 SER H2 H N N 248 SER HA H N N 249 SER HB2 H N N 250 SER HB3 H N N 251 SER HG H N N 252 SER HXT H N N 253 THR N N N N 254 THR CA C N S 255 THR C C N N 256 THR O O N N 257 THR CB C N R 258 THR OG1 O N N 259 THR CG2 C N N 260 THR OXT O N N 261 THR H H N N 262 THR H2 H N N 263 THR HA H N N 264 THR HB H N N 265 THR HG1 H N N 266 THR HG21 H N N 267 THR HG22 H N N 268 THR HG23 H N N 269 THR HXT H N N 270 TRP N N N N 271 TRP CA C N S 272 TRP C C N N 273 TRP O O N N 274 TRP CB C N N 275 TRP CG C Y N 276 TRP CD1 C Y N 277 TRP CD2 C Y N 278 TRP NE1 N Y N 279 TRP CE2 C Y N 280 TRP CE3 C Y N 281 TRP CZ2 C Y N 282 TRP CZ3 C Y N 283 TRP CH2 C Y N 284 TRP OXT O N N 285 TRP H H N N 286 TRP H2 H N N 287 TRP HA H N N 288 TRP HB2 H N N 289 TRP HB3 H N N 290 TRP HD1 H N N 291 TRP HE1 H N N 292 TRP HE3 H N N 293 TRP HZ2 H N N 294 TRP HZ3 H N N 295 TRP HH2 H N N 296 TRP HXT H N N 297 VAL N N N N 298 VAL CA C N S 299 VAL C C N N 300 VAL O O N N 301 VAL CB C N N 302 VAL CG1 C N N 303 VAL CG2 C N N 304 VAL OXT O N N 305 VAL H H N N 306 VAL H2 H N N 307 VAL HA H N N 308 VAL HB H N N 309 VAL HG11 H N N 310 VAL HG12 H N N 311 VAL HG13 H N N 312 VAL HG21 H N N 313 VAL HG22 H N N 314 VAL HG23 H N N 315 VAL HXT H N N 316 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLU N CA sing N N 74 GLU N H sing N N 75 GLU N H2 sing N N 76 GLU CA C sing N N 77 GLU CA CB sing N N 78 GLU CA HA sing N N 79 GLU C O doub N N 80 GLU C OXT sing N N 81 GLU CB CG sing N N 82 GLU CB HB2 sing N N 83 GLU CB HB3 sing N N 84 GLU CG CD sing N N 85 GLU CG HG2 sing N N 86 GLU CG HG3 sing N N 87 GLU CD OE1 doub N N 88 GLU CD OE2 sing N N 89 GLU OE2 HE2 sing N N 90 GLU OXT HXT sing N N 91 GLY N CA sing N N 92 GLY N H sing N N 93 GLY N H2 sing N N 94 GLY CA C sing N N 95 GLY CA HA2 sing N N 96 GLY CA HA3 sing N N 97 GLY C O doub N N 98 GLY C OXT sing N N 99 GLY OXT HXT sing N N 100 HIS N CA sing N N 101 HIS N H sing N N 102 HIS N H2 sing N N 103 HIS CA C sing N N 104 HIS CA CB sing N N 105 HIS CA HA sing N N 106 HIS C O doub N N 107 HIS C OXT sing N N 108 HIS CB CG sing N N 109 HIS CB HB2 sing N N 110 HIS CB HB3 sing N N 111 HIS CG ND1 sing Y N 112 HIS CG CD2 doub Y N 113 HIS ND1 CE1 doub Y N 114 HIS ND1 HD1 sing N N 115 HIS CD2 NE2 sing Y N 116 HIS CD2 HD2 sing N N 117 HIS CE1 NE2 sing Y N 118 HIS CE1 HE1 sing N N 119 HIS NE2 HE2 sing N N 120 HIS OXT HXT sing N N 121 ILE N CA sing N N 122 ILE N H sing N N 123 ILE N H2 sing N N 124 ILE CA C sing N N 125 ILE CA CB sing N N 126 ILE CA HA sing N N 127 ILE C O doub N N 128 ILE C OXT sing N N 129 ILE CB CG1 sing N N 130 ILE CB CG2 sing N N 131 ILE CB HB sing N N 132 ILE CG1 CD1 sing N N 133 ILE CG1 HG12 sing N N 134 ILE CG1 HG13 sing N N 135 ILE CG2 HG21 sing N N 136 ILE CG2 HG22 sing N N 137 ILE CG2 HG23 sing N N 138 ILE CD1 HD11 sing N N 139 ILE CD1 HD12 sing N N 140 ILE CD1 HD13 sing N N 141 ILE OXT HXT sing N N 142 LEU N CA sing N N 143 LEU N H sing N N 144 LEU N H2 sing N N 145 LEU CA C sing N N 146 LEU CA CB sing N N 147 LEU CA HA sing N N 148 LEU C O doub N N 149 LEU C OXT sing N N 150 LEU CB CG sing N N 151 LEU CB HB2 sing N N 152 LEU CB HB3 sing N N 153 LEU CG CD1 sing N N 154 LEU CG CD2 sing N N 155 LEU CG HG sing N N 156 LEU CD1 HD11 sing N N 157 LEU CD1 HD12 sing N N 158 LEU CD1 HD13 sing N N 159 LEU CD2 HD21 sing N N 160 LEU CD2 HD22 sing N N 161 LEU CD2 HD23 sing N N 162 LEU OXT HXT sing N N 163 LYS N CA sing N N 164 LYS N H sing N N 165 LYS N H2 sing N N 166 LYS CA C sing N N 167 LYS CA CB sing N N 168 LYS CA HA sing N N 169 LYS C O doub N N 170 LYS C OXT sing N N 171 LYS CB CG sing N N 172 LYS CB HB2 sing N N 173 LYS CB HB3 sing N N 174 LYS CG CD sing N N 175 LYS CG HG2 sing N N 176 LYS CG HG3 sing N N 177 LYS CD CE sing N N 178 LYS CD HD2 sing N N 179 LYS CD HD3 sing N N 180 LYS CE NZ sing N N 181 LYS CE HE2 sing N N 182 LYS CE HE3 sing N N 183 LYS NZ HZ1 sing N N 184 LYS NZ HZ2 sing N N 185 LYS NZ HZ3 sing N N 186 LYS OXT HXT sing N N 187 MET N CA sing N N 188 MET N H sing N N 189 MET N H2 sing N N 190 MET CA C sing N N 191 MET CA CB sing N N 192 MET CA HA sing N N 193 MET C O doub N N 194 MET C OXT sing N N 195 MET CB CG sing N N 196 MET CB HB2 sing N N 197 MET CB HB3 sing N N 198 MET CG SD sing N N 199 MET CG HG2 sing N N 200 MET CG HG3 sing N N 201 MET SD CE sing N N 202 MET CE HE1 sing N N 203 MET CE HE2 sing N N 204 MET CE HE3 sing N N 205 MET OXT HXT sing N N 206 PHE N CA sing N N 207 PHE N H sing N N 208 PHE N H2 sing N N 209 PHE CA C sing N N 210 PHE CA CB sing N N 211 PHE CA HA sing N N 212 PHE C O doub N N 213 PHE C OXT sing N N 214 PHE CB CG sing N N 215 PHE CB HB2 sing N N 216 PHE CB HB3 sing N N 217 PHE CG CD1 doub Y N 218 PHE CG CD2 sing Y N 219 PHE CD1 CE1 sing Y N 220 PHE CD1 HD1 sing N N 221 PHE CD2 CE2 doub Y N 222 PHE CD2 HD2 sing N N 223 PHE CE1 CZ doub Y N 224 PHE CE1 HE1 sing N N 225 PHE CE2 CZ sing Y N 226 PHE CE2 HE2 sing N N 227 PHE CZ HZ sing N N 228 PHE OXT HXT sing N N 229 SER N CA sing N N 230 SER N H sing N N 231 SER N H2 sing N N 232 SER CA C sing N N 233 SER CA CB sing N N 234 SER CA HA sing N N 235 SER C O doub N N 236 SER C OXT sing N N 237 SER CB OG sing N N 238 SER CB HB2 sing N N 239 SER CB HB3 sing N N 240 SER OG HG sing N N 241 SER OXT HXT sing N N 242 THR N CA sing N N 243 THR N H sing N N 244 THR N H2 sing N N 245 THR CA C sing N N 246 THR CA CB sing N N 247 THR CA HA sing N N 248 THR C O doub N N 249 THR C OXT sing N N 250 THR CB OG1 sing N N 251 THR CB CG2 sing N N 252 THR CB HB sing N N 253 THR OG1 HG1 sing N N 254 THR CG2 HG21 sing N N 255 THR CG2 HG22 sing N N 256 THR CG2 HG23 sing N N 257 THR OXT HXT sing N N 258 TRP N CA sing N N 259 TRP N H sing N N 260 TRP N H2 sing N N 261 TRP CA C sing N N 262 TRP CA CB sing N N 263 TRP CA HA sing N N 264 TRP C O doub N N 265 TRP C OXT sing N N 266 TRP CB CG sing N N 267 TRP CB HB2 sing N N 268 TRP CB HB3 sing N N 269 TRP CG CD1 doub Y N 270 TRP CG CD2 sing Y N 271 TRP CD1 NE1 sing Y N 272 TRP CD1 HD1 sing N N 273 TRP CD2 CE2 doub Y N 274 TRP CD2 CE3 sing Y N 275 TRP NE1 CE2 sing Y N 276 TRP NE1 HE1 sing N N 277 TRP CE2 CZ2 sing Y N 278 TRP CE3 CZ3 doub Y N 279 TRP CE3 HE3 sing N N 280 TRP CZ2 CH2 doub Y N 281 TRP CZ2 HZ2 sing N N 282 TRP CZ3 CH2 sing Y N 283 TRP CZ3 HZ3 sing N N 284 TRP CH2 HH2 sing N N 285 TRP OXT HXT sing N N 286 VAL N CA sing N N 287 VAL N H sing N N 288 VAL N H2 sing N N 289 VAL CA C sing N N 290 VAL CA CB sing N N 291 VAL CA HA sing N N 292 VAL C O doub N N 293 VAL C OXT sing N N 294 VAL CB CG1 sing N N 295 VAL CB CG2 sing N N 296 VAL CB HB sing N N 297 VAL CG1 HG11 sing N N 298 VAL CG1 HG12 sing N N 299 VAL CG1 HG13 sing N N 300 VAL CG2 HG21 sing N N 301 VAL CG2 HG22 sing N N 302 VAL CG2 HG23 sing N N 303 VAL OXT HXT sing N N 304 # _atom_sites.entry_id 1PD3 _atom_sites.fract_transf_matrix[1][1] 0.012093 _atom_sites.fract_transf_matrix[1][2] 0.006982 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013964 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016364 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_