HEADER STRUCTURAL PROTEIN 19-MAY-03 1PD6 TITLE THE NMR STRUCTURE OF DOMAIN C2 OF HUMAN CARDIAC MYOSIN BINDING PROTEIN TITLE 2 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, CARDIAC-TYPE, DOMAIN C2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN C2; COMPND 5 SYNONYM: CARDIAC MYOSIN-BINDING PROTEIN C; CARDIAC MYBP-C; PROTEIN C, COMPND 6 CARDIAC; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 GENE: MYBPC3; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21*; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-8A KEYWDS IG DOMAIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 28 AUTHOR A.ABABOU,M.GAUTEL,M.PFUHL REVDAT 3 23-FEB-22 1PD6 1 REMARK SEQADV REVDAT 2 22-JUL-08 1PD6 1 VERSN JRNL REVDAT 1 03-AUG-04 1PD6 0 JRNL AUTH A.ABABOU,M.GAUTEL,M.PFUHL JRNL TITL DISSECTING THE N-TERMINAL MYOSIN BINDING SITE OF HUMAN JRNL TITL 2 CARDIAC MYOSIN-BINDING PROTEIN C. STRUCTURE AND MYOSIN JRNL TITL 3 BINDING OF DOMAIN C2 JRNL REF J.BIOL.CHEM. V. 282 9204 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17192269 JRNL DOI 10.1074/JBC.M610899200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANSIG 3.3, ARIA 1.1 REMARK 3 AUTHORS : KRAULIS, J. (ANSIG), LINGE, J., O'DONOGHUE, S., REMARK 3 NILGES, M. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PD6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019245. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.1; 0.1; 7.0 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75MM C2; 15N; 20MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 0.75MM REMARK 210 C2; 15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 0.75MM REMARK 210 C2; 15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITYINOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.1, NMRPIPE 290302, AZARA REMARK 210 2.6 REMARK 210 METHOD USED : WE HAVE USED ARIA PROTOCOLS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 28 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: FURTHER NMR EXPERIMENTS COULD BE FOUND IN THE BMRB REMARK 210 ACCESSION NUMBER 5591 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-28 REMARK 465 RES C SSSEQI REMARK 465 MET A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 MET A 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 LEU A 247 HE21 GLN A 285 0.96 REMARK 500 HB2 LEU A 233 HB3 LEU A 271 1.29 REMARK 500 HD2 LYS A 227 HA GLU A 301 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 TYR A 223 CZ TYR A 223 CE2 -0.081 REMARK 500 11 TYR A 223 CE1 TYR A 223 CZ 0.108 REMARK 500 11 TYR A 223 CZ TYR A 223 CE2 -0.103 REMARK 500 13 TYR A 223 CZ TYR A 223 CE2 -0.080 REMARK 500 16 TYR A 260 CZ TYR A 260 CE2 -0.080 REMARK 500 22 TYR A 223 CE1 TYR A 223 CZ 0.081 REMARK 500 22 TYR A 223 CZ TYR A 223 CE2 -0.092 REMARK 500 23 TYR A 223 CZ TYR A 223 CE2 -0.079 REMARK 500 24 TYR A 223 CE1 TYR A 223 CZ 0.095 REMARK 500 24 TYR A 223 CZ TYR A 223 CE2 -0.092 REMARK 500 25 TYR A 223 CE1 TYR A 223 CZ 0.089 REMARK 500 25 TYR A 223 CZ TYR A 223 CE2 -0.097 REMARK 500 26 TYR A 223 CZ TYR A 223 CE2 -0.079 REMARK 500 26 TYR A 284 CE1 TYR A 284 CZ -0.082 REMARK 500 28 TYR A 223 CE1 TYR A 223 CZ 0.103 REMARK 500 28 TYR A 223 CZ TYR A 223 CE2 -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 212 -40.45 177.04 REMARK 500 1 THR A 213 155.70 -48.17 REMARK 500 1 ALA A 214 28.28 -71.15 REMARK 500 1 PRO A 221 36.27 -66.39 REMARK 500 1 ALA A 222 84.34 -157.53 REMARK 500 1 LYS A 230 107.63 71.12 REMARK 500 1 HIS A 240 -57.79 78.94 REMARK 500 1 ASN A 249 106.60 -47.31 REMARK 500 1 GLN A 254 -121.67 -83.07 REMARK 500 1 SER A 258 -27.02 -156.12 REMARK 500 1 ALA A 267 -39.34 75.97 REMARK 500 1 SER A 277 -129.27 -148.34 REMARK 500 1 ALA A 279 -46.30 -157.51 REMARK 500 1 ALA A 282 -112.32 -171.17 REMARK 500 2 LYS A 210 153.57 175.80 REMARK 500 2 SER A 212 -115.19 -157.40 REMARK 500 2 THR A 213 -168.06 53.45 REMARK 500 2 PRO A 221 40.88 -66.35 REMARK 500 2 ALA A 222 81.42 -163.18 REMARK 500 2 LYS A 230 108.94 69.49 REMARK 500 2 HIS A 240 -34.50 74.67 REMARK 500 2 ASP A 241 69.33 -158.02 REMARK 500 2 SER A 256 -151.83 -150.82 REMARK 500 2 SER A 258 -65.50 -160.11 REMARK 500 2 SER A 277 -133.93 -78.23 REMARK 500 2 ALA A 279 -44.50 -165.85 REMARK 500 2 ASP A 281 116.91 -15.39 REMARK 500 2 ALA A 282 -112.14 -177.14 REMARK 500 3 LYS A 210 -107.16 177.73 REMARK 500 3 SER A 212 -131.32 -176.88 REMARK 500 3 PRO A 221 35.68 -63.93 REMARK 500 3 ALA A 222 87.31 -160.10 REMARK 500 3 HIS A 229 -71.48 -86.87 REMARK 500 3 LYS A 230 113.14 158.48 REMARK 500 3 HIS A 240 -55.74 76.51 REMARK 500 3 ASN A 249 108.03 -47.03 REMARK 500 3 GLN A 254 -110.50 -83.11 REMARK 500 3 CYS A 276 62.80 -154.45 REMARK 500 3 SER A 277 -129.00 -89.51 REMARK 500 3 ALA A 279 -43.92 -164.54 REMARK 500 3 ALA A 282 -118.34 -171.61 REMARK 500 4 LYS A 210 -112.61 -150.77 REMARK 500 4 SER A 212 -125.04 -163.88 REMARK 500 4 THR A 213 -173.80 52.86 REMARK 500 4 PRO A 221 37.10 -66.45 REMARK 500 4 ALA A 222 85.42 -157.19 REMARK 500 4 LYS A 230 107.53 69.76 REMARK 500 4 HIS A 240 -62.77 75.38 REMARK 500 4 ASP A 241 57.00 -108.12 REMARK 500 4 SER A 256 -159.85 -151.55 REMARK 500 REMARK 500 THIS ENTRY HAS 408 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 223 0.05 SIDE CHAIN REMARK 500 11 TYR A 223 0.06 SIDE CHAIN REMARK 500 23 TYR A 223 0.06 SIDE CHAIN REMARK 500 24 TYR A 223 0.06 SIDE CHAIN REMARK 500 25 TYR A 223 0.05 SIDE CHAIN REMARK 500 28 TYR A 260 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 4 SER A 226 10.02 REMARK 500 5 SER A 226 10.08 REMARK 500 6 SER A 226 10.70 REMARK 500 7 SER A 226 10.21 REMARK 500 10 SER A 226 10.26 REMARK 500 12 SER A 226 10.86 REMARK 500 15 VAL A 225 -10.00 REMARK 500 15 SER A 226 10.45 REMARK 500 20 SER A 212 11.36 REMARK 500 20 SER A 226 10.21 REMARK 500 20 LYS A 245 10.30 REMARK 500 20 TRP A 246 11.36 REMARK 500 21 SER A 226 10.52 REMARK 500 22 TRP A 246 10.23 REMARK 500 24 CYS A 276 10.44 REMARK 500 25 SER A 226 10.80 REMARK 500 27 SER A 226 10.19 REMARK 500 27 TRP A 246 10.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GXE RELATED DB: PDB REMARK 900 THE FIRST STRUCTURE OF A DOMAIN OF MYOSIN BINDING PROTEIN C DBREF 1PD6 A 208 301 UNP Q14896 MYPC3_HUMAN 358 451 SEQADV 1PD6 MET A 198 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 199 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 200 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 201 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 202 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 203 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 HIS A 204 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 SER A 205 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 SER A 206 UNP Q14896 EXPRESSION TAG SEQADV 1PD6 MET A 207 UNP Q14896 EXPRESSION TAG SEQRES 1 A 104 MET HIS HIS HIS HIS HIS HIS SER SER MET ASP GLU LYS SEQRES 2 A 104 LYS SER THR ALA PHE GLN LYS LYS LEU GLU PRO ALA TYR SEQRES 3 A 104 GLN VAL SER LYS GLY HIS LYS ILE ARG LEU THR VAL GLU SEQRES 4 A 104 LEU ALA ASP HIS ASP ALA GLU VAL LYS TRP LEU LYS ASN SEQRES 5 A 104 GLY GLN GLU ILE GLN MET SER GLY SER LYS TYR ILE PHE SEQRES 6 A 104 GLU SER ILE GLY ALA LYS ARG THR LEU THR ILE SER GLN SEQRES 7 A 104 CYS SER LEU ALA ASP ASP ALA ALA TYR GLN CYS VAL VAL SEQRES 8 A 104 GLY GLY GLU LYS CYS SER THR GLU LEU PHE VAL LYS GLU SHEET 1 A 4 LYS A 217 LYS A 218 0 SHEET 2 A 4 ILE A 231 GLU A 236 -1 O GLU A 236 N LYS A 217 SHEET 3 A 4 LYS A 268 ILE A 273 -1 O ILE A 273 N ILE A 231 SHEET 4 A 4 ILE A 261 ILE A 265 -1 N ILE A 261 O THR A 272 SHEET 1 B 5 ALA A 222 SER A 226 0 SHEET 2 B 5 GLU A 296 LYS A 300 1 O PHE A 298 N TYR A 223 SHEET 3 B 5 ALA A 282 VAL A 288 -1 N ALA A 282 O LEU A 297 SHEET 4 B 5 LYS A 245 LYS A 248 -1 N LEU A 247 O GLN A 285 SHEET 5 B 5 GLU A 252 ILE A 253 -1 O ILE A 253 N TRP A 246 SHEET 1 C 4 ALA A 222 SER A 226 0 SHEET 2 C 4 GLU A 296 LYS A 300 1 O PHE A 298 N TYR A 223 SHEET 3 C 4 ALA A 282 VAL A 288 -1 N ALA A 282 O LEU A 297 SHEET 4 C 4 GLU A 291 CYS A 293 -1 O CYS A 293 N CYS A 286 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1