HEADER METALLOPROTEASE 24-MAY-96 1PEX TITLE COLLAGENASE-3 (MMP-13) C-TERMINAL HEMOPEXIN-LIKE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL HEMOPEXIN-LIKE DOMAIN; COMPND 5 SYNONYM: MMP-13; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BREAST; SOURCE 6 TISSUE: BREAST CANCER; SOURCE 7 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM_CELL: 1PEX CELLS; SOURCE 11 EXPRESSION_SYSTEM_ORGANELLE: PURIFIED FROM SERUM FREE SOURCE 12 CONDITIONED CELL CULTURE MEDIUM; SOURCE 13 OTHER_DETAILS: STABLY TRANSFECTED KEYWDS C-TERMINAL HEMOPEXIN-LIKE DOMAIN OF MATRIX- KEYWDS 2 METALLOPROTEINASE, METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR F.X.GOMIS-RUTH,U.GOHLKE,M.BETZ,V.KNAUPER,G.MURPHY,C.LOPEZ- AUTHOR 2 OTIN,W.BODE REVDAT 2 24-FEB-09 1PEX 1 VERSN REVDAT 1 23-DEC-96 1PEX 0 JRNL AUTH F.X.GOMIS-RUTH,U.GOHLKE,M.BETZ,V.KNAUPER,G.MURPHY, JRNL AUTH 2 C.LOPEZ-OTIN,W.BODE JRNL TITL THE HELPING HAND OF COLLAGENASE-3 (MMP-13): 2.7 A JRNL TITL 2 CRYSTAL STRUCTURE OF ITS C-TERMINAL JRNL TITL 3 HAEMOPEXIN-LIKE DOMAIN. JRNL REF J.MOL.BIOL. V. 264 556 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8969305 JRNL DOI 10.1006/JMBI.1996.0661 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.23 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PEX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6858 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.00667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.00667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.01333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 259 REMARK 465 TYR A 260 REMARK 465 GLY A 261 REMARK 465 PRO A 262 REMARK 465 GLY A 263 REMARK 465 ASP A 264 REMARK 465 GLU A 265 REMARK 465 ASP A 266 REMARK 465 PRO A 267 REMARK 465 ASN A 268 REMARK 465 PRO A 269 REMARK 465 LYS A 270 REMARK 465 HIS A 271 REMARK 465 PRO A 272 REMARK 465 LYS A 273 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 308 REMARK 475 GLN A 309 REMARK 475 VAL A 310 REMARK 475 ASP A 311 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 293 CB CG CD OE1 OE2 REMARK 480 ASN A 395 CB CG OD1 ND2 REMARK 480 ARG A 413 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 433 N - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 280 17.69 -67.00 REMARK 500 THR A 288 -163.78 -129.06 REMARK 500 ASP A 299 -124.27 65.56 REMARK 500 GLN A 308 -107.79 -165.12 REMARK 500 GLN A 309 -44.96 -163.33 REMARK 500 ASP A 311 144.62 78.37 REMARK 500 ALA A 312 81.42 -169.45 REMARK 500 GLU A 366 -8.32 -58.65 REMARK 500 ASP A 402 49.37 -85.52 REMARK 500 THR A 403 -39.11 -137.11 REMARK 500 ASP A 408 97.29 -52.02 REMARK 500 LYS A 409 -17.89 -41.36 REMARK 500 PHE A 419 78.90 -114.60 REMARK 500 ASN A 433 94.90 -10.16 REMARK 500 PRO A 442 27.49 -77.17 REMARK 500 TRP A 465 89.05 60.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 411 PRO A 412 39.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 505 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 12.42 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 514 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 11.95 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 528 DISTANCE = 11.39 ANGSTROMS REMARK 525 HOH A 531 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 553 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A 554 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 577 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 285 O REMARK 620 2 ASP A 329 O 93.0 REMARK 620 3 SER A 378 O 134.8 77.7 REMARK 620 4 ASP A 427 O 80.8 142.3 80.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 287 O REMARK 620 2 ALA A 331 O 85.2 REMARK 620 3 ALA A 380 O 170.9 89.8 REMARK 620 4 VAL A 429 O 95.3 164.3 87.4 REMARK 620 5 CL A 504 CL 91.4 96.2 96.7 99.5 REMARK 620 6 CL A 501 CL 87.2 79.6 84.4 84.7 175.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 DBREF 1PEX A 259 466 UNP P45452 MMP13_HUMAN 265 471 SEQRES 1 A 207 LEU TYR GLY PRO GLY ASP GLU ASP PRO ASN PRO LYS HIS SEQRES 2 A 207 PRO LYS THR PRO ASP LYS CYS ASP PRO SER LEU SER LEU SEQRES 3 A 207 ASP ALA ILE THR SER LEU ARG GLY GLU THR MET ILE PHE SEQRES 4 A 207 LYS ASP ARG PHE PHE TRP ARG LEU HIS PRO GLN GLN VAL SEQRES 5 A 207 ASP ALA GLU LEU PHE LEU THR LYS SER PHE TRP PRO GLU SEQRES 6 A 207 LEU PRO ASN ARG ILE ASP ALA ALA TYR GLU HIS PRO SER SEQRES 7 A 207 HIS ASP LEU ILE PHE ILE PHE ARG GLY ARG LYS PHE TRP SEQRES 8 A 207 ALA LEU ASN GLY TYR ASP ILE LEU GLU GLY TYR PRO LYS SEQRES 9 A 207 LYS ILE SER GLU LEU GLY LEU PRO LYS GLU VAL LYS LYS SEQRES 10 A 207 ILE SER ALA ALA VAL HIS PHE GLU ASP THR GLY LYS THR SEQRES 11 A 207 LEU LEU PHE SER GLY ASN GLN VAL TRP ARG TYR ASP ASP SEQRES 12 A 207 THR ASN HIS ILE MET ASP LYS ASP TYR PRO ARG LEU ILE SEQRES 13 A 207 GLU GLU ASP PHE PRO GLY ILE GLY ASP LYS VAL ASP ALA SEQRES 14 A 207 VAL TYR GLU LYS ASN GLY TYR ILE TYR PHE PHE ASN GLY SEQRES 15 A 207 PRO ILE GLN PHE GLU TYR SER ILE TRP SER ASN ARG ILE SEQRES 16 A 207 VAL ARG VAL MET PRO ALA ASN SER ILE LEU TRP CYS HET SO4 A 500 5 HET CL A 501 1 HET CA A 502 1 HET CA A 503 1 HET CL A 504 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 SO4 O4 S 2- FORMUL 3 CL 2(CL 1-) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *73(H2 O) HELIX 1 1 THR A 317 PHE A 320 1 4 HELIX 2 2 ILE A 415 ASP A 418 1 4 HELIX 3 3 ALA A 460 LEU A 464 5 5 SHEET 1 A 4 ALA A 286 LEU A 290 0 SHEET 2 A 4 GLU A 293 LYS A 298 -1 N PHE A 297 O ALA A 286 SHEET 3 A 4 PHE A 301 LEU A 305 -1 N LEU A 305 O THR A 294 SHEET 4 A 4 GLU A 313 LEU A 316 -1 N PHE A 315 O PHE A 302 SHEET 1 B 3 ALA A 330 HIS A 334 0 SHEET 2 B 3 LEU A 339 ARG A 344 -1 N PHE A 343 O ALA A 330 SHEET 3 B 3 LYS A 347 LEU A 351 -1 N LEU A 351 O ILE A 340 SHEET 1 C 3 ALA A 379 HIS A 382 0 SHEET 2 C 3 LYS A 388 SER A 393 -1 N PHE A 392 O ALA A 379 SHEET 3 C 3 GLN A 396 ASP A 401 -1 N TYR A 400 O THR A 389 SHEET 1 D 4 ALA A 428 LYS A 432 0 SHEET 2 D 4 TYR A 435 ASN A 440 -1 N PHE A 439 O ALA A 428 SHEET 3 D 4 ILE A 443 SER A 448 -1 N TYR A 447 O ILE A 436 SHEET 4 D 4 ARG A 453 PRO A 459 -1 N MET A 458 O GLN A 444 SSBOND 1 CYS A 278 CYS A 466 1555 1555 2.06 LINK CA CA A 502 O ASP A 285 1555 1555 2.11 LINK CA CA A 502 O ASP A 329 1555 1555 2.11 LINK CA CA A 502 O SER A 378 1555 1555 2.32 LINK CA CA A 502 O ASP A 427 1555 1555 2.36 LINK CA CA A 503 O ILE A 287 1555 1555 2.37 LINK CA CA A 503 O ALA A 331 1555 1555 2.15 LINK CA CA A 503 O ALA A 380 1555 1555 2.22 LINK CA CA A 503 O VAL A 429 1555 1555 2.24 LINK CA CA A 503 CL CL A 504 1555 1555 3.33 LINK CA CA A 503 CL CL A 501 1555 1555 2.90 CISPEP 1 TYR A 360 PRO A 361 0 14.64 SITE 1 AC1 4 ASN A 326 ARG A 327 ARG A 344 ARG A 346 SITE 1 AC2 5 ILE A 287 ALA A 331 ALA A 380 VAL A 429 SITE 2 AC2 5 CA A 503 SITE 1 AC3 4 ASP A 285 ASP A 329 SER A 378 ASP A 427 SITE 1 AC4 6 ILE A 287 ALA A 331 ALA A 380 VAL A 429 SITE 2 AC4 6 CL A 501 CL A 504 SITE 1 AC5 1 CA A 503 CRYST1 52.940 52.940 144.020 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018889 0.010906 0.000000 0.00000 SCALE2 0.000000 0.021811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006943 0.00000