HEADER TRANSCRIPTION 27-MAY-03 1PFJ TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PH/PTB DOMAIN OF THE TFIIH P62 TITLE 2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX P62 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL PH/PTB DOMAIN; COMPND 5 SYNONYM: BASIC TRANSCRIPTION FACTOR 62 KDA SUBUNIT, BTF2-P62, GENERAL COMPND 6 TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GTF2H1 OR BTF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS PH/PTB DOMAIN, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL KEYWDS 2 GENOMICS, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR V.GERVAIS,V.LAMOUR,A.JAWHARI,F.FRINDEL,E.WASIELEWSKI,J.C.THIERRY, AUTHOR 2 B.KIEFFER,A.POTERSZMAN,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 4 23-FEB-22 1PFJ 1 REMARK REVDAT 3 24-FEB-09 1PFJ 1 VERSN REVDAT 2 06-JUL-04 1PFJ 1 JRNL REVDAT 1 08-JUN-04 1PFJ 0 JRNL AUTH V.GERVAIS,V.LAMOUR,A.JAWHARI,F.FRINDEL,E.WASIELEWSKI, JRNL AUTH 2 S.DUBAELE,J.M.EGLY,J.C.THIERRY,B.KIEFFER,A.POTERSZMAN JRNL TITL TFIIH CONTAINS A PH DOMAIN INVOLVED IN DNA NUCLEOTIDE JRNL TITL 2 EXCISION REPAIR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 616 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15195146 JRNL DOI 10.1038/NSMB782 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOTAL NOE RESTRAINTS: 1944 REMARK 3 DIHEDRAL ANGLE RESTRAINTS: 148 REMARK 3 HYDROGEN BONDS: 35 REMARK 3 RESIDUAL DIPOLAR COUPLING: 76 REMARK 4 REMARK 4 1PFJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019294. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293; 298; 293 REMARK 210 PH : 7.4; 7.4; 7.4; 7.4 REMARK 210 IONIC STRENGTH : 20MM; 20MM; 20MM; 20MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM P62 U-15N,13C; 20MM REMARK 210 DEUTERATED TRIS; 90% H2O, 10% REMARK 210 D2O; 1.2MM P62 U-15N; 20MM REMARK 210 DEUTERATED TRIS; 90% H2O, 10% REMARK 210 D2O; 0.9MM P62 U-15N; 20MM REMARK 210 DEUTERATED TRIS + 26UG C12E6/ REMARK 210 HEXANOL; 90% H2O, 10% D2O; 1.5MM REMARK 210 P62; 20MM DEUTERATED TRIS; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA; IPAP-[1H- REMARK 210 15N] HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 99 H LYS A 102 1.40 REMARK 500 H VAL A 12 O LEU A 24 1.46 REMARK 500 HZ2 LYS A 93 OE1 GLN A 97 1.47 REMARK 500 H ARG A 16 O HIS A 78 1.48 REMARK 500 O LEU A 95 H GLN A 98 1.53 REMARK 500 O TYR A 25 H ALA A 32 1.54 REMARK 500 O LEU A 10 H LEU A 26 1.57 REMARK 500 O VAL A 15 H GLY A 22 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 35 C - N - CD ANGL. DEV. = -17.2 DEGREES REMARK 500 1 PRO A 57 C - N - CD ANGL. DEV. = -20.4 DEGREES REMARK 500 2 PRO A 35 C - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 2 PRO A 57 C - N - CD ANGL. DEV. = -26.5 DEGREES REMARK 500 3 PRO A 35 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 4 PRO A 35 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 7 PRO A 35 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 8 PRO A 35 C - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 10 PRO A 35 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 10 PRO A 57 C - N - CD ANGL. DEV. = -24.2 DEGREES REMARK 500 12 PRO A 35 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 15 PRO A 35 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 18 PRO A 35 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 -92.75 -150.22 REMARK 500 1 LYS A 18 -23.69 -36.47 REMARK 500 1 GLU A 36 96.64 -48.04 REMARK 500 1 LYS A 38 -100.08 -109.22 REMARK 500 1 ARG A 40 -159.67 -111.55 REMARK 500 1 SER A 44 119.90 -166.68 REMARK 500 1 CYS A 52 132.01 172.61 REMARK 500 1 PRO A 57 63.60 -119.61 REMARK 500 1 ALA A 61 -72.65 -30.43 REMARK 500 1 LYS A 62 42.88 -168.59 REMARK 500 1 ILE A 63 81.60 89.19 REMARK 500 1 ALA A 71 -153.71 -73.38 REMARK 500 1 SER A 80 143.48 -177.25 REMARK 500 1 SER A 83 21.71 -151.23 REMARK 500 1 VAL A 86 -140.37 -152.26 REMARK 500 1 GLU A 88 -74.22 -38.58 REMARK 500 2 SER A 5 -160.99 -106.04 REMARK 500 2 LYS A 18 -21.03 -36.44 REMARK 500 2 PRO A 35 -158.38 -106.16 REMARK 500 2 LYS A 38 40.98 -89.28 REMARK 500 2 ARG A 40 -99.82 -119.25 REMARK 500 2 PHE A 41 93.94 -41.52 REMARK 500 2 SER A 44 102.52 -168.69 REMARK 500 2 CYS A 52 132.00 173.17 REMARK 500 2 LYS A 60 -168.18 -116.68 REMARK 500 2 ALA A 61 -72.94 -38.19 REMARK 500 2 LYS A 62 46.39 -167.40 REMARK 500 2 ILE A 63 83.31 79.46 REMARK 500 2 ALA A 71 -154.42 -78.77 REMARK 500 2 SER A 80 142.03 -177.22 REMARK 500 2 SER A 83 17.90 -150.28 REMARK 500 2 VAL A 86 -141.63 -153.09 REMARK 500 2 GLU A 88 -72.63 -45.28 REMARK 500 2 ARG A 105 -49.54 -160.25 REMARK 500 2 LYS A 106 -79.69 -111.58 REMARK 500 2 ALA A 107 33.14 -156.03 REMARK 500 3 THR A 3 -171.14 -62.03 REMARK 500 3 SER A 5 -149.01 -113.42 REMARK 500 3 LYS A 18 -23.67 -36.72 REMARK 500 3 PRO A 35 -152.40 -115.80 REMARK 500 3 GLU A 36 39.78 -89.26 REMARK 500 3 LYS A 38 51.16 -152.18 REMARK 500 3 ASP A 39 -121.95 -160.93 REMARK 500 3 ARG A 40 -50.99 -138.74 REMARK 500 3 SER A 44 101.48 -164.18 REMARK 500 3 CYS A 52 134.41 173.08 REMARK 500 3 PRO A 57 55.48 -68.56 REMARK 500 3 ALA A 61 -70.16 -45.11 REMARK 500 3 LYS A 62 54.21 -171.08 REMARK 500 3 ILE A 63 71.48 83.65 REMARK 500 REMARK 500 THIS ENTRY HAS 360 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4901 RELATED DB: BMRB REMARK 900 1H, 15N, 13C ASSIGNMENTS OF THE N-TERMINAL DOMAIN OF THE HUMAN REMARK 900 TFIIH P62 SUBUNIT REMARK 900 RELATED ID: IGBMC-0024-000 RELATED DB: TARGETDB DBREF 1PFJ A 1 108 UNP P32780 TF2H1_HUMAN 1 108 SEQRES 1 A 108 MET ALA THR SER SER GLU GLU VAL LEU LEU ILE VAL LYS SEQRES 2 A 108 LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA LEU TYR LEU SEQRES 3 A 108 MET ALA GLU ARG ILE ALA TRP ALA PRO GLU GLY LYS ASP SEQRES 4 A 108 ARG PHE THR ILE SER HIS MET TYR ALA ASP ILE LYS CYS SEQRES 5 A 108 GLN LYS ILE SER PRO GLU GLY LYS ALA LYS ILE GLN LEU SEQRES 6 A 108 GLN LEU VAL LEU HIS ALA GLY ASP THR THR ASN PHE HIS SEQRES 7 A 108 PHE SER ASN GLU SER THR ALA VAL LYS GLU ARG ASP ALA SEQRES 8 A 108 VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO LYS PHE LYS SEQRES 9 A 108 ARG LYS ALA ASN HELIX 1 1 VAL A 86 LYS A 104 1 19 SHEET 1 A 4 VAL A 8 VAL A 12 0 SHEET 2 A 4 ALA A 23 MET A 27 -1 O LEU A 24 N VAL A 12 SHEET 3 A 4 ARG A 30 ALA A 34 -1 O ALA A 32 N TYR A 25 SHEET 4 A 4 ILE A 43 MET A 46 -1 O HIS A 45 N ILE A 31 SHEET 1 B 3 GLN A 53 ILE A 55 0 SHEET 2 B 3 GLN A 64 VAL A 68 -1 O GLN A 66 N LYS A 54 SHEET 3 B 3 THR A 74 HIS A 78 -1 O THR A 75 N LEU A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1