data_1PHW # _entry.id 1PHW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PHW RCSB RCSB019329 WWPDB D_1000019329 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G7U 'Crystal structures of kdo8p synthase in its binary complex with substrate phosphoenol pyruvate' unspecified PDB 1D9E 'Structure of e. Coli kdo8p synthase' unspecified PDB 1PHQ 'Crystal structure of KDO8P synthase in its binary complex with substrate analog E-FPEP' unspecified PDB 1PL9 ;Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP ; unspecified PDB 1Q3N 'Crystal structure of KDO8P synthase in its binary complex with substrate PEP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PHW _pdbx_database_status.recvd_initial_deposition_date 2003-05-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vainer, R.' 1 'Belakhov, V.' 2 'Rabkin, E.' 3 'Baasov, T.' 4 'Adir, N.' 5 # _citation.id primary _citation.title 'Crystal structures of Escherichia coli KDO8P synthase complexes reveal the source of catalytic irreversibility.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 351 _citation.page_first 641 _citation.page_last 652 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16023668 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.06.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vainer, R.' 1 primary 'Belakhov, V.' 2 primary 'Rabkin, E.' 3 primary 'Baasov, T.' 4 primary 'Adir, N.' 5 # _cell.entry_id 1PHW _cell.length_a 118.258 _cell.length_b 118.258 _cell.length_c 118.258 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PHW _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-dehydro-3-deoxyphosphooctonate aldolase' 30870.676 1 2.5.1.55 ? ? ? 2 non-polymer syn ;ANY 5'-MONOPHOSPHATE NUCLEOTIDE ; 214.110 1 ? ? ? ? 3 water nat water 18.015 34 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Phospho-2-dehydro-3-deoxyoctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, KDO-8-phosphate synthetase, KDO 8-P synthase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 GLN n 1 4 LYS n 1 5 VAL n 1 6 VAL n 1 7 SER n 1 8 ILE n 1 9 GLY n 1 10 ASP n 1 11 ILE n 1 12 ASN n 1 13 VAL n 1 14 ALA n 1 15 ASN n 1 16 ASP n 1 17 LEU n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 LEU n 1 22 PHE n 1 23 GLY n 1 24 GLY n 1 25 MET n 1 26 ASN n 1 27 VAL n 1 28 LEU n 1 29 GLU n 1 30 SER n 1 31 ARG n 1 32 ASP n 1 33 LEU n 1 34 ALA n 1 35 MET n 1 36 ARG n 1 37 ILE n 1 38 CYS n 1 39 GLU n 1 40 HIS n 1 41 TYR n 1 42 VAL n 1 43 THR n 1 44 VAL n 1 45 THR n 1 46 GLN n 1 47 LYS n 1 48 LEU n 1 49 GLY n 1 50 ILE n 1 51 PRO n 1 52 TYR n 1 53 VAL n 1 54 PHE n 1 55 LYS n 1 56 ALA n 1 57 SER n 1 58 PHE n 1 59 ASP n 1 60 LYS n 1 61 ALA n 1 62 ASN n 1 63 ARG n 1 64 SER n 1 65 SER n 1 66 ILE n 1 67 HIS n 1 68 SER n 1 69 TYR n 1 70 ARG n 1 71 GLY n 1 72 PRO n 1 73 GLY n 1 74 LEU n 1 75 GLU n 1 76 GLU n 1 77 GLY n 1 78 MET n 1 79 LYS n 1 80 ILE n 1 81 PHE n 1 82 GLN n 1 83 GLU n 1 84 LEU n 1 85 LYS n 1 86 GLN n 1 87 THR n 1 88 PHE n 1 89 GLY n 1 90 VAL n 1 91 LYS n 1 92 ILE n 1 93 ILE n 1 94 THR n 1 95 ASP n 1 96 VAL n 1 97 HIS n 1 98 GLU n 1 99 PRO n 1 100 SER n 1 101 GLN n 1 102 ALA n 1 103 GLN n 1 104 PRO n 1 105 VAL n 1 106 ALA n 1 107 ASP n 1 108 VAL n 1 109 VAL n 1 110 ASP n 1 111 VAL n 1 112 ILE n 1 113 GLN n 1 114 LEU n 1 115 PRO n 1 116 ALA n 1 117 PHE n 1 118 LEU n 1 119 ALA n 1 120 ARG n 1 121 GLN n 1 122 THR n 1 123 ASP n 1 124 LEU n 1 125 VAL n 1 126 GLU n 1 127 ALA n 1 128 MET n 1 129 ALA n 1 130 LYS n 1 131 THR n 1 132 GLY n 1 133 ALA n 1 134 VAL n 1 135 ILE n 1 136 ASN n 1 137 VAL n 1 138 LYS n 1 139 LYS n 1 140 PRO n 1 141 GLN n 1 142 PHE n 1 143 VAL n 1 144 SER n 1 145 PRO n 1 146 GLY n 1 147 GLN n 1 148 MET n 1 149 GLY n 1 150 ASN n 1 151 ILE n 1 152 VAL n 1 153 ASP n 1 154 LYS n 1 155 PHE n 1 156 LYS n 1 157 GLU n 1 158 GLY n 1 159 GLY n 1 160 ASN n 1 161 GLU n 1 162 LYS n 1 163 VAL n 1 164 ILE n 1 165 LEU n 1 166 CYS n 1 167 ASP n 1 168 ARG n 1 169 GLY n 1 170 ALA n 1 171 ASN n 1 172 PHE n 1 173 GLY n 1 174 TYR n 1 175 ASP n 1 176 ASN n 1 177 LEU n 1 178 VAL n 1 179 VAL n 1 180 ASP n 1 181 MET n 1 182 LEU n 1 183 GLY n 1 184 PHE n 1 185 SER n 1 186 ILE n 1 187 MET n 1 188 LYS n 1 189 LYS n 1 190 VAL n 1 191 SER n 1 192 GLY n 1 193 ASN n 1 194 SER n 1 195 PRO n 1 196 VAL n 1 197 ILE n 1 198 PHE n 1 199 ASP n 1 200 VAL n 1 201 THR n 1 202 HIS n 1 203 ALA n 1 204 LEU n 1 205 GLN n 1 206 CYS n 1 207 ARG n 1 208 ASP n 1 209 PRO n 1 210 PHE n 1 211 GLY n 1 212 ALA n 1 213 ALA n 1 214 SER n 1 215 GLY n 1 216 GLY n 1 217 ARG n 1 218 ARG n 1 219 ALA n 1 220 GLN n 1 221 VAL n 1 222 ALA n 1 223 GLU n 1 224 LEU n 1 225 ALA n 1 226 ARG n 1 227 ALA n 1 228 GLY n 1 229 MET n 1 230 ALA n 1 231 VAL n 1 232 GLY n 1 233 LEU n 1 234 ALA n 1 235 GLY n 1 236 LEU n 1 237 PHE n 1 238 ILE n 1 239 GLU n 1 240 ALA n 1 241 HIS n 1 242 PRO n 1 243 ASP n 1 244 PRO n 1 245 GLU n 1 246 HIS n 1 247 ALA n 1 248 LYS n 1 249 CYS n 1 250 ASP n 1 251 GLY n 1 252 PRO n 1 253 SER n 1 254 ALA n 1 255 LEU n 1 256 PRO n 1 257 LEU n 1 258 ALA n 1 259 LYS n 1 260 LEU n 1 261 GLU n 1 262 PRO n 1 263 PHE n 1 264 LEU n 1 265 LYS n 1 266 GLN n 1 267 MET n 1 268 LYS n 1 269 ALA n 1 270 ILE n 1 271 ASP n 1 272 ASP n 1 273 LEU n 1 274 VAL n 1 275 LYS n 1 276 GLY n 1 277 PHE n 1 278 GLU n 1 279 GLU n 1 280 LEU n 1 281 ASP n 1 282 THR n 1 283 SER n 1 284 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene KDSA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDSA_ECOLI _struct_ref.pdbx_db_accession P0A715 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PHW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 284 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A715 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 284 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1284 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 N 'RNA linking' . ;ANY 5'-MONOPHOSPHATE NUCLEOTIDE ; "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PHW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details 'PEG 6000, Glycrol, Tris-HCl , pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 294 K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-12-19 _diffrn_detector.details 'Bent mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Triangular mono chromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.81 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.81 # _reflns.entry_id 1PHW _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 2.36 _reflns.d_resolution_low 45 _reflns.number_all 11488 _reflns.number_obs 11064 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.36 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.472 _reflns_shell.pdbx_Rsym_value 0.444 _reflns_shell.meanI_over_sigI_obs 5.5 _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1109 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1PHW _refine.ls_d_res_high 2.36 _refine.ls_d_res_low 45 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_ls_sigma_I 2 _refine.ls_number_reflns_all 11488 _refine.ls_number_reflns_obs 8958 _refine.ls_number_reflns_R_free 925 _refine.ls_percent_reflns_obs 78 _refine.ls_R_factor_all 0.3329 _refine.ls_R_factor_obs 0.2604 _refine.ls_R_factor_R_work 0.2366 _refine.ls_R_factor_R_free 0.3127 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '1D9E (a)' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PHW _refine_analyze.Luzzati_coordinate_error_obs 0.38 _refine_analyze.Luzzati_sigma_a_obs 0.050 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.048 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2082 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 2129 _refine_hist.d_res_high 2.36 _refine_hist.d_res_low 45 # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.36 _refine_ls_shell.d_res_low 2.41 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2859 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3476 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_obs 288 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1PHW _struct.title 'Crystal structure of KDO8P synthase in its binary complex with substrate analog 1-deoxy-A5P' _struct.pdbx_descriptor '2-dehydro-3-deoxyphosphooctonate aldolase (E.C.2.5.1.55)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PHW _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'BETA-ALPHA-BARRELS, LYASE, LIPOPOLYSACCHARIDE, A5P ANALOG, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. The biological assembly is a tetramer generated from the monomer in the asymmetric unit by the operations: x,y,z; -x,-y,z; -x,y,-z; x,y,-z; ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 30 ? GLY A 49 ? SER A 1030 GLY A 1049 1 ? 20 HELX_P HELX_P2 2 GLY A 73 ? GLY A 89 ? GLY A 1073 GLY A 1089 1 ? 17 HELX_P HELX_P3 3 GLN A 101 ? VAL A 109 ? GLN A 1101 VAL A 1109 1 ? 9 HELX_P HELX_P4 4 PRO A 115 ? ARG A 120 ? PRO A 1115 ARG A 1120 1 ? 6 HELX_P HELX_P5 5 GLN A 121 ? GLY A 132 ? GLN A 1121 GLY A 1132 1 ? 12 HELX_P HELX_P6 6 SER A 144 ? GLY A 146 ? SER A 1144 GLY A 1146 5 ? 3 HELX_P HELX_P7 7 GLN A 147 ? GLU A 157 ? GLN A 1147 GLU A 1157 1 ? 11 HELX_P HELX_P8 8 LEU A 182 ? SER A 191 ? LEU A 1182 SER A 1191 1 ? 10 HELX_P HELX_P9 9 THR A 201 ? GLN A 205 ? THR A 1201 GLN A 1205 5 ? 5 HELX_P HELX_P10 10 ALA A 222 ? GLY A 232 ? ALA A 1222 GLY A 1232 1 ? 11 HELX_P HELX_P11 11 ASP A 243 ? LYS A 248 ? ASP A 1243 LYS A 1248 1 ? 6 HELX_P HELX_P12 12 LYS A 259 ? GLY A 276 ? LYS A 1259 GLY A 1276 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? parallel D 1 2 ? parallel E 1 2 ? anti-parallel F 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? ILE A 8 ? VAL A 1006 ILE A 1008 A 2 ILE A 11 ? VAL A 13 ? ILE A 1011 VAL A 1013 B 1 VAL A 20 ? PHE A 22 ? VAL A 1020 PHE A 1022 B 2 GLY A 235 ? PHE A 237 ? GLY A 1235 PHE A 1237 B 3 VAL A 196 ? ASP A 199 ? VAL A 1196 ASP A 1199 B 4 VAL A 163 ? ASP A 167 ? VAL A 1163 ASP A 1167 B 5 ILE A 135 ? LYS A 139 ? ILE A 1135 LYS A 1139 C 1 GLY A 24 ? VAL A 27 ? GLY A 1024 VAL A 1027 C 2 LYS A 55 ? SER A 57 ? LYS A 1055 SER A 1057 D 1 ILE A 93 ? ASP A 95 ? ILE A 1093 ASP A 1095 D 2 VAL A 111 ? GLN A 113 ? VAL A 1111 GLN A 1113 E 1 ALA A 170 ? ASN A 171 ? ALA A 1170 ASN A 1171 E 2 LEU A 177 ? VAL A 178 ? LEU A 1177 VAL A 1178 F 1 ALA A 240 ? HIS A 241 ? ALA A 1240 HIS A 1241 F 2 LEU A 255 ? PRO A 256 ? LEU A 1255 PRO A 1256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 1008 O ILE A 11 ? O ILE A 1011 B 1 2 N PHE A 22 ? N PHE A 1022 O LEU A 236 ? O LEU A 1236 B 2 3 O PHE A 237 ? O PHE A 1237 N PHE A 198 ? N PHE A 1198 B 3 4 O ILE A 197 ? O ILE A 1197 N LEU A 165 ? N LEU A 1165 B 4 5 O CYS A 166 ? O CYS A 1166 N LYS A 139 ? N LYS A 1139 C 1 2 N MET A 25 ? N MET A 1025 O LYS A 55 ? O LYS A 1055 D 1 2 N THR A 94 ? N THR A 1094 O VAL A 111 ? O VAL A 1111 E 1 2 N ALA A 170 ? N ALA A 1170 O VAL A 178 ? O VAL A 1178 F 1 2 N HIS A 241 ? N HIS A 1241 O LEU A 255 ? O LEU A 1255 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE ROB A 70' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 115 ? PRO A 1115 . ? 4_556 ? 2 AC1 6 ALA A 116 ? ALA A 1116 . ? 4_556 ? 3 AC1 6 PHE A 117 ? PHE A 1117 . ? 4_556 ? 4 AC1 6 LYS A 138 ? LYS A 1138 . ? 4_556 ? 5 AC1 6 ARG A 168 ? ARG A 1168 . ? 4_556 ? 6 AC1 6 HIS A 202 ? HIS A 1202 . ? 4_556 ? # _database_PDB_matrix.entry_id 1PHW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PHW _atom_sites.fract_transf_matrix[1][1] 0.008456 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008456 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008456 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text 'Chirality error on N' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1001 1001 MET MET A . n A 1 2 LYS 2 1002 1002 LYS LYS A . n A 1 3 GLN 3 1003 1003 GLN GLN A . n A 1 4 LYS 4 1004 1004 LYS LYS A . n A 1 5 VAL 5 1005 1005 VAL VAL A . n A 1 6 VAL 6 1006 1006 VAL VAL A . n A 1 7 SER 7 1007 1007 SER SER A . n A 1 8 ILE 8 1008 1008 ILE ILE A . n A 1 9 GLY 9 1009 1009 GLY GLY A . n A 1 10 ASP 10 1010 1010 ASP ASP A . n A 1 11 ILE 11 1011 1011 ILE ILE A . n A 1 12 ASN 12 1012 1012 ASN ASN A . n A 1 13 VAL 13 1013 1013 VAL VAL A . n A 1 14 ALA 14 1014 1014 ALA ALA A . n A 1 15 ASN 15 1015 1015 ASN ASN A . n A 1 16 ASP 16 1016 1016 ASP ASP A . n A 1 17 LEU 17 1017 1017 LEU LEU A . n A 1 18 PRO 18 1018 1018 PRO PRO A . n A 1 19 PHE 19 1019 1019 PHE PHE A . n A 1 20 VAL 20 1020 1020 VAL VAL A . n A 1 21 LEU 21 1021 1021 LEU LEU A . n A 1 22 PHE 22 1022 1022 PHE PHE A . n A 1 23 GLY 23 1023 1023 GLY GLY A . n A 1 24 GLY 24 1024 1024 GLY GLY A . n A 1 25 MET 25 1025 1025 MET MET A . n A 1 26 ASN 26 1026 1026 ASN ASN A . n A 1 27 VAL 27 1027 1027 VAL VAL A . n A 1 28 LEU 28 1028 1028 LEU LEU A . n A 1 29 GLU 29 1029 1029 GLU GLU A . n A 1 30 SER 30 1030 1030 SER SER A . n A 1 31 ARG 31 1031 1031 ARG ARG A . n A 1 32 ASP 32 1032 1032 ASP ASP A . n A 1 33 LEU 33 1033 1033 LEU LEU A . n A 1 34 ALA 34 1034 1034 ALA ALA A . n A 1 35 MET 35 1035 1035 MET MET A . n A 1 36 ARG 36 1036 1036 ARG ARG A . n A 1 37 ILE 37 1037 1037 ILE ILE A . n A 1 38 CYS 38 1038 1038 CYS CYS A . n A 1 39 GLU 39 1039 1039 GLU GLU A . n A 1 40 HIS 40 1040 1040 HIS HIS A . n A 1 41 TYR 41 1041 1041 TYR TYR A . n A 1 42 VAL 42 1042 1042 VAL VAL A . n A 1 43 THR 43 1043 1043 THR THR A . n A 1 44 VAL 44 1044 1044 VAL VAL A . n A 1 45 THR 45 1045 1045 THR THR A . n A 1 46 GLN 46 1046 1046 GLN GLN A . n A 1 47 LYS 47 1047 1047 LYS LYS A . n A 1 48 LEU 48 1048 1048 LEU LEU A . n A 1 49 GLY 49 1049 1049 GLY GLY A . n A 1 50 ILE 50 1050 1050 ILE ILE A . n A 1 51 PRO 51 1051 1051 PRO PRO A . n A 1 52 TYR 52 1052 1052 TYR TYR A . n A 1 53 VAL 53 1053 1053 VAL VAL A . n A 1 54 PHE 54 1054 1054 PHE PHE A . n A 1 55 LYS 55 1055 1055 LYS LYS A . n A 1 56 ALA 56 1056 1056 ALA ALA A . n A 1 57 SER 57 1057 1057 SER SER A . n A 1 58 PHE 58 1058 1058 PHE PHE A . n A 1 59 ASP 59 1059 1059 ASP ASP A . n A 1 60 LYS 60 1060 1060 LYS LYS A . n A 1 61 ALA 61 1061 1061 ALA ALA A . n A 1 62 ASN 62 1062 1062 ASN ASN A . n A 1 63 ARG 63 1063 1063 ARG ARG A . n A 1 64 SER 64 1064 1064 SER SER A . n A 1 65 SER 65 1065 1065 SER SER A . n A 1 66 ILE 66 1066 1066 ILE ILE A . n A 1 67 HIS 67 1067 1067 HIS HIS A . n A 1 68 SER 68 1068 1068 SER SER A . n A 1 69 TYR 69 1069 1069 TYR TYR A . n A 1 70 ARG 70 1070 1070 ARG ARG A . n A 1 71 GLY 71 1071 1071 GLY GLY A . n A 1 72 PRO 72 1072 1072 PRO PRO A . n A 1 73 GLY 73 1073 1073 GLY GLY A . n A 1 74 LEU 74 1074 1074 LEU LEU A . n A 1 75 GLU 75 1075 1075 GLU GLU A . n A 1 76 GLU 76 1076 1076 GLU GLU A . n A 1 77 GLY 77 1077 1077 GLY GLY A . n A 1 78 MET 78 1078 1078 MET MET A . n A 1 79 LYS 79 1079 1079 LYS LYS A . n A 1 80 ILE 80 1080 1080 ILE ILE A . n A 1 81 PHE 81 1081 1081 PHE PHE A . n A 1 82 GLN 82 1082 1082 GLN GLN A . n A 1 83 GLU 83 1083 1083 GLU GLU A . n A 1 84 LEU 84 1084 1084 LEU LEU A . n A 1 85 LYS 85 1085 1085 LYS LYS A . n A 1 86 GLN 86 1086 1086 GLN GLN A . n A 1 87 THR 87 1087 1087 THR THR A . n A 1 88 PHE 88 1088 1088 PHE PHE A . n A 1 89 GLY 89 1089 1089 GLY GLY A . n A 1 90 VAL 90 1090 1090 VAL VAL A . n A 1 91 LYS 91 1091 1091 LYS LYS A . n A 1 92 ILE 92 1092 1092 ILE ILE A . n A 1 93 ILE 93 1093 1093 ILE ILE A . n A 1 94 THR 94 1094 1094 THR THR A . n A 1 95 ASP 95 1095 1095 ASP ASP A . n A 1 96 VAL 96 1096 1096 VAL VAL A . n A 1 97 HIS 97 1097 1097 HIS HIS A . n A 1 98 GLU 98 1098 1098 GLU GLU A . n A 1 99 PRO 99 1099 1099 PRO PRO A . n A 1 100 SER 100 1100 1100 SER SER A . n A 1 101 GLN 101 1101 1101 GLN GLN A . n A 1 102 ALA 102 1102 1102 ALA ALA A . n A 1 103 GLN 103 1103 1103 GLN GLN A . n A 1 104 PRO 104 1104 1104 PRO PRO A . n A 1 105 VAL 105 1105 1105 VAL VAL A . n A 1 106 ALA 106 1106 1106 ALA ALA A . n A 1 107 ASP 107 1107 1107 ASP ASP A . n A 1 108 VAL 108 1108 1108 VAL VAL A . n A 1 109 VAL 109 1109 1109 VAL VAL A . n A 1 110 ASP 110 1110 1110 ASP ASP A . n A 1 111 VAL 111 1111 1111 VAL VAL A . n A 1 112 ILE 112 1112 1112 ILE ILE A . n A 1 113 GLN 113 1113 1113 GLN GLN A . n A 1 114 LEU 114 1114 1114 LEU LEU A . n A 1 115 PRO 115 1115 1115 PRO PRO A . n A 1 116 ALA 116 1116 1116 ALA ALA A . n A 1 117 PHE 117 1117 1117 PHE PHE A . n A 1 118 LEU 118 1118 1118 LEU LEU A . n A 1 119 ALA 119 1119 1119 ALA ALA A . n A 1 120 ARG 120 1120 1120 ARG ARG A . n A 1 121 GLN 121 1121 1121 GLN GLN A . n A 1 122 THR 122 1122 1122 THR THR A . n A 1 123 ASP 123 1123 1123 ASP ASP A . n A 1 124 LEU 124 1124 1124 LEU LEU A . n A 1 125 VAL 125 1125 1125 VAL VAL A . n A 1 126 GLU 126 1126 1126 GLU GLU A . n A 1 127 ALA 127 1127 1127 ALA ALA A . n A 1 128 MET 128 1128 1128 MET MET A . n A 1 129 ALA 129 1129 1129 ALA ALA A . n A 1 130 LYS 130 1130 1130 LYS LYS A . n A 1 131 THR 131 1131 1131 THR THR A . n A 1 132 GLY 132 1132 1132 GLY GLY A . n A 1 133 ALA 133 1133 1133 ALA ALA A . n A 1 134 VAL 134 1134 1134 VAL VAL A . n A 1 135 ILE 135 1135 1135 ILE ILE A . n A 1 136 ASN 136 1136 1136 ASN ASN A . n A 1 137 VAL 137 1137 1137 VAL VAL A . n A 1 138 LYS 138 1138 1138 LYS LYS A . n A 1 139 LYS 139 1139 1139 LYS LYS A . n A 1 140 PRO 140 1140 1140 PRO PRO A . n A 1 141 GLN 141 1141 1141 GLN GLN A . n A 1 142 PHE 142 1142 1142 PHE PHE A . n A 1 143 VAL 143 1143 1143 VAL VAL A . n A 1 144 SER 144 1144 1144 SER SER A . n A 1 145 PRO 145 1145 1145 PRO PRO A . n A 1 146 GLY 146 1146 1146 GLY GLY A . n A 1 147 GLN 147 1147 1147 GLN GLN A . n A 1 148 MET 148 1148 1148 MET MET A . n A 1 149 GLY 149 1149 1149 GLY GLY A . n A 1 150 ASN 150 1150 1150 ASN ASN A . n A 1 151 ILE 151 1151 1151 ILE ILE A . n A 1 152 VAL 152 1152 1152 VAL VAL A . n A 1 153 ASP 153 1153 1153 ASP ASP A . n A 1 154 LYS 154 1154 1154 LYS LYS A . n A 1 155 PHE 155 1155 1155 PHE PHE A . n A 1 156 LYS 156 1156 1156 LYS LYS A . n A 1 157 GLU 157 1157 1157 GLU GLU A . n A 1 158 GLY 158 1158 1158 GLY GLY A . n A 1 159 GLY 159 1159 1159 GLY GLY A . n A 1 160 ASN 160 1160 1160 ASN ASN A . n A 1 161 GLU 161 1161 1161 GLU GLU A . n A 1 162 LYS 162 1162 1162 LYS LYS A . n A 1 163 VAL 163 1163 1163 VAL VAL A . n A 1 164 ILE 164 1164 1164 ILE ILE A . n A 1 165 LEU 165 1165 1165 LEU LEU A . n A 1 166 CYS 166 1166 1166 CYS CYS A . n A 1 167 ASP 167 1167 1167 ASP ASP A . n A 1 168 ARG 168 1168 1168 ARG ARG A . n A 1 169 GLY 169 1169 1169 GLY GLY A . n A 1 170 ALA 170 1170 1170 ALA ALA A . n A 1 171 ASN 171 1171 1171 ASN ASN A . n A 1 172 PHE 172 1172 1172 PHE PHE A . n A 1 173 GLY 173 1173 1173 GLY GLY A . n A 1 174 TYR 174 1174 1174 TYR TYR A . n A 1 175 ASP 175 1175 1175 ASP ASP A . n A 1 176 ASN 176 1176 1176 ASN ASN A . n A 1 177 LEU 177 1177 1177 LEU LEU A . n A 1 178 VAL 178 1178 1178 VAL VAL A . n A 1 179 VAL 179 1179 1179 VAL VAL A . n A 1 180 ASP 180 1180 1180 ASP ASP A . n A 1 181 MET 181 1181 1181 MET MET A . n A 1 182 LEU 182 1182 1182 LEU LEU A . n A 1 183 GLY 183 1183 1183 GLY GLY A . n A 1 184 PHE 184 1184 1184 PHE PHE A . n A 1 185 SER 185 1185 1185 SER SER A . n A 1 186 ILE 186 1186 1186 ILE ILE A . n A 1 187 MET 187 1187 1187 MET MET A . n A 1 188 LYS 188 1188 1188 LYS LYS A . n A 1 189 LYS 189 1189 1189 LYS LYS A . n A 1 190 VAL 190 1190 1190 VAL VAL A . n A 1 191 SER 191 1191 1191 SER SER A . n A 1 192 GLY 192 1192 1192 GLY GLY A . n A 1 193 ASN 193 1193 1193 ASN ASN A . n A 1 194 SER 194 1194 1194 SER SER A . n A 1 195 PRO 195 1195 1195 PRO PRO A . n A 1 196 VAL 196 1196 1196 VAL VAL A . n A 1 197 ILE 197 1197 1197 ILE ILE A . n A 1 198 PHE 198 1198 1198 PHE PHE A . n A 1 199 ASP 199 1199 1199 ASP ASP A . n A 1 200 VAL 200 1200 1200 VAL VAL A . n A 1 201 THR 201 1201 1201 THR THR A . n A 1 202 HIS 202 1202 1202 HIS HIS A . n A 1 203 ALA 203 1203 1203 ALA ALA A . n A 1 204 LEU 204 1204 1204 LEU LEU A . n A 1 205 GLN 205 1205 1205 GLN GLN A . n A 1 206 CYS 206 1206 ? ? ? A . n A 1 207 ARG 207 1207 ? ? ? A . n A 1 208 ASP 208 1208 ? ? ? A . n A 1 209 PRO 209 1209 ? ? ? A . n A 1 210 PHE 210 1210 ? ? ? A . n A 1 211 GLY 211 1211 ? ? ? A . n A 1 212 ALA 212 1212 ? ? ? A . n A 1 213 ALA 213 1213 ? ? ? A . n A 1 214 SER 214 1214 ? ? ? A . n A 1 215 GLY 215 1215 ? ? ? A . n A 1 216 GLY 216 1216 ? ? ? A . n A 1 217 ARG 217 1217 ? ? ? A . n A 1 218 ARG 218 1218 1218 ARG ARG A . n A 1 219 ALA 219 1219 1219 ALA ALA A . n A 1 220 GLN 220 1220 1220 GLN GLN A . n A 1 221 VAL 221 1221 1221 VAL VAL A . n A 1 222 ALA 222 1222 1222 ALA ALA A . n A 1 223 GLU 223 1223 1223 GLU GLU A . n A 1 224 LEU 224 1224 1224 LEU LEU A . n A 1 225 ALA 225 1225 1225 ALA ALA A . n A 1 226 ARG 226 1226 1226 ARG ARG A . n A 1 227 ALA 227 1227 1227 ALA ALA A . n A 1 228 GLY 228 1228 1228 GLY GLY A . n A 1 229 MET 229 1229 1229 MET MET A . n A 1 230 ALA 230 1230 1230 ALA ALA A . n A 1 231 VAL 231 1231 1231 VAL VAL A . n A 1 232 GLY 232 1232 1232 GLY GLY A . n A 1 233 LEU 233 1233 1233 LEU LEU A . n A 1 234 ALA 234 1234 1234 ALA ALA A . n A 1 235 GLY 235 1235 1235 GLY GLY A . n A 1 236 LEU 236 1236 1236 LEU LEU A . n A 1 237 PHE 237 1237 1237 PHE PHE A . n A 1 238 ILE 238 1238 1238 ILE ILE A . n A 1 239 GLU 239 1239 1239 GLU GLU A . n A 1 240 ALA 240 1240 1240 ALA ALA A . n A 1 241 HIS 241 1241 1241 HIS HIS A . n A 1 242 PRO 242 1242 1242 PRO PRO A . n A 1 243 ASP 243 1243 1243 ASP ASP A . n A 1 244 PRO 244 1244 1244 PRO PRO A . n A 1 245 GLU 245 1245 1245 GLU GLU A . n A 1 246 HIS 246 1246 1246 HIS HIS A . n A 1 247 ALA 247 1247 1247 ALA ALA A . n A 1 248 LYS 248 1248 1248 LYS LYS A . n A 1 249 CYS 249 1249 1249 CYS CYS A . n A 1 250 ASP 250 1250 1250 ASP ASP A . n A 1 251 GLY 251 1251 1251 GLY GLY A . n A 1 252 PRO 252 1252 1252 PRO PRO A . n A 1 253 SER 253 1253 1253 SER SER A . n A 1 254 ALA 254 1254 1254 ALA ALA A . n A 1 255 LEU 255 1255 1255 LEU LEU A . n A 1 256 PRO 256 1256 1256 PRO PRO A . n A 1 257 LEU 257 1257 1257 LEU LEU A . n A 1 258 ALA 258 1258 1258 ALA ALA A . n A 1 259 LYS 259 1259 1259 LYS LYS A . n A 1 260 LEU 260 1260 1260 LEU LEU A . n A 1 261 GLU 261 1261 1261 GLU GLU A . n A 1 262 PRO 262 1262 1262 PRO PRO A . n A 1 263 PHE 263 1263 1263 PHE PHE A . n A 1 264 LEU 264 1264 1264 LEU LEU A . n A 1 265 LYS 265 1265 1265 LYS LYS A . n A 1 266 GLN 266 1266 1266 GLN GLN A . n A 1 267 MET 267 1267 1267 MET MET A . n A 1 268 LYS 268 1268 1268 LYS LYS A . n A 1 269 ALA 269 1269 1269 ALA ALA A . n A 1 270 ILE 270 1270 1270 ILE ILE A . n A 1 271 ASP 271 1271 1271 ASP ASP A . n A 1 272 ASP 272 1272 1272 ASP ASP A . n A 1 273 LEU 273 1273 1273 LEU LEU A . n A 1 274 VAL 274 1274 1274 VAL VAL A . n A 1 275 LYS 275 1275 1275 LYS LYS A . n A 1 276 GLY 276 1276 1276 GLY GLY A . n A 1 277 PHE 277 1277 1277 PHE PHE A . n A 1 278 GLU 278 1278 1278 GLU GLU A . n A 1 279 GLU 279 1279 1279 GLU GLU A . n A 1 280 LEU 280 1280 1280 LEU LEU A . n A 1 281 ASP 281 1281 1281 ASP ASP A . n A 1 282 THR 282 1282 1282 THR THR A . n A 1 283 SER 283 1283 1283 SER SER A . n A 1 284 LYS 284 1284 1284 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 15030 ? 1 MORE -90 ? 1 'SSA (A^2)' 38480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.2580000000 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.2580000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-13 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 1022 ? ? -113.46 59.99 2 1 PHE A 1054 ? ? -37.41 137.33 3 1 ASN A 1062 ? ? -114.38 64.87 4 1 SER A 1065 ? ? 50.41 144.57 5 1 HIS A 1067 ? ? -83.60 46.75 6 1 PRO A 1099 ? ? -43.69 -16.52 7 1 ALA A 1102 ? ? -42.46 -74.27 8 1 ALA A 1119 ? ? -27.78 -44.30 9 1 LYS A 1130 ? ? -66.42 -81.13 10 1 THR A 1131 ? ? -15.05 -44.45 11 1 LYS A 1154 ? ? -57.63 -9.12 12 1 GLU A 1245 ? ? -44.71 -102.80 13 1 CYS A 1249 ? ? -140.95 -112.84 14 1 ALA A 1258 ? ? -46.72 -9.46 15 1 GLU A 1279 ? ? -35.41 130.45 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C2'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id N _pdbx_validate_chiral.auth_seq_id 70 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 1206 ? A CYS 206 2 1 Y 1 A ARG 1207 ? A ARG 207 3 1 Y 1 A ASP 1208 ? A ASP 208 4 1 Y 1 A PRO 1209 ? A PRO 209 5 1 Y 1 A PHE 1210 ? A PHE 210 6 1 Y 1 A GLY 1211 ? A GLY 211 7 1 Y 1 A ALA 1212 ? A ALA 212 8 1 Y 1 A ALA 1213 ? A ALA 213 9 1 Y 1 A SER 1214 ? A SER 214 10 1 Y 1 A GLY 1215 ? A GLY 215 11 1 Y 1 A GLY 1216 ? A GLY 216 12 1 Y 1 A ARG 1217 ? A ARG 217 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;ANY 5'-MONOPHOSPHATE NUCLEOTIDE ; N 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N 1 70 70 N N A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . #