data_1PIK # _entry.id 1PIK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PIK WWPDB D_1000175698 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PIK _pdbx_database_status.recvd_initial_deposition_date 1996-12-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, R.A.' 1 'Ikemoto, N.' 2 'Patel, D.J.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution Structure of the Esperamicin A1-DNA Complex' J.Mol.Biol. 265 173 186 1997 JMOBAK UK 0022-2836 0070 ? 9020981 10.1006/jmbi.1996.0719 1 'Esperamicin A1 Intercalates Into Duplex DNA from the Minor Groove' J.Am.Chem.Soc. 116 9387 ? 1994 JACSAT US 0002-7863 0004 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, R.A.' 1 ? primary 'Ikemoto, N.' 2 ? primary 'Patel, D.J.' 3 ? 1 'Ikemoto, N.' 4 ? 1 'Kumar, R.A.' 5 ? 1 'Dedon, P.C.' 6 ? 1 'Danishefsky, S.J.' 7 ? 1 'Patel, D.J.' 8 ? # _cell.entry_id 1PIK _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PIK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(C*GP*GP*AP*TP*CP*CP*GP)-3') ; 2427.605 2 ? ? ? 'COMPLEXED WITH ESPERAMICIN A1' 2 branched man '2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose' 334.409 1 ? ? ? ? 3 non-polymer syn ;4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) ; 265.262 1 ? ? ? ? 4 non-polymer syn 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose 178.249 1 ? ? ? ? 5 non-polymer syn 2-deoxy-alpha-L-fucopyranose 148.157 1 ? ? ? ? 6 non-polymer syn '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' 407.527 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGATCCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DC n 1 8 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1PIK _struct_ref.pdbx_db_accession 1PIK _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PIK A 1 ? 8 ? 1PIK 1 ? 8 ? 1 8 2 1 1PIK B 1 ? 8 ? 1PIK 11 ? 18 ? 11 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DAG 'D-saccharide, beta linking' . 4-amino-4,6-dideoxy-beta-D-glucopyranose ? 'C6 H13 N O4' 163.172 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DLF 'L-saccharide, alpha linking' . 2-deoxy-alpha-L-fucopyranose ? 'C6 H12 O4' 148.157 DPA non-polymer . ;4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) ; ? 'C13 H15 N O5' 265.262 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MAT 'L-saccharide, alpha linking' . '2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentopyranose' ? 'C9 H19 N O3' 189.252 MTC non-polymer . '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' ? 'C18 H17 N O4 S3' 407.527 TMR 'D-saccharide, beta linking' . 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose ? 'C7 H14 O3 S' 178.249 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 UNITYPLUS Varian 400 2 UNITYPLUS Varian 500 3 UNITYPLUS Varian 600 # _pdbx_nmr_refine.entry_id 1PIK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1PIK _pdbx_nmr_ensemble.conformers_calculated_total_number 4 _pdbx_nmr_ensemble.conformers_submitted_total_number 4 _pdbx_nmr_ensemble.conformer_selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' XEASY ? ? 3 'structure solution' RPEAK ? ? 4 'structure solution' X-PLOR ? ? 5 # _exptl.entry_id 1PIK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1PIK _struct.title 'ESPERAMICIN A1-DNA COMPLEX, NMR, 4 STRUCTURES' _struct.pdbx_descriptor ;5'-D(*CP*GP*GP*AP*TP*CP*CP*G)-3', ESPERAMICIN A1 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PIK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, DRUG COMPLEX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? D DPA . C1 ? ? ? 1_555 F DLF . O3 ? ? A DPA 25 B DLF 24 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale2 covale one ? E TMR . O1 ? ? ? 1_555 C DAG . N4 ? ? B TMR 22 C DAG 1 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale3 covale one ? F DLF . O1 ? ? ? 1_555 G MTC . C9 ? ? B DLF 24 B MTC 26 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale4 covale one ? G MTC . C1 ? ? ? 1_555 C DAG . O1 ? ? B MTC 26 C DAG 1 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale5 covale both ? C DAG . O2 ? ? ? 1_555 C MAT . C1 ? ? C DAG 1 C MAT 2 1_555 ? ? ? ? ? ? ? 1.396 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 1 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 1 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 1 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 4 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 4 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1PIK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PIK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DA 4 14 14 DA A B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DC 6 16 16 DC C B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DG 8 18 18 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DPA 1 25 25 DPA DPA A . E 4 TMR 1 22 22 TMR TMR B . F 5 DLF 1 24 24 DLF DLF B . G 6 MTC 1 26 26 MTC MTC B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-03-12 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly 14 4 'Structure model' pdbx_struct_oper_list 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_asym_id' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.auth_comp_id' 7 4 'Structure model' '_atom_site.auth_seq_id' 8 4 'Structure model' '_atom_site.label_asym_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_atom_site.label_entity_id' 12 4 'Structure model' '_atom_site.type_symbol' 13 4 'Structure model' '_chem_comp.name' 14 4 'Structure model' '_chem_comp.type' 15 4 'Structure model' '_pdbx_database_status.process_site' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 A DPA 25 ? ? O3 B DLF 24 ? ? 2.14 2 2 O1 A DPA 25 ? ? O3 B DLF 24 ? ? 2.13 3 3 O1 A DPA 25 ? ? O3 B DLF 24 ? ? 2.15 4 4 O1 A DPA 25 ? ? O3 B DLF 24 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.564 1.512 0.052 0.007 N 2 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.558 1.512 0.046 0.007 N 3 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.418 1.374 0.044 0.006 N 4 1 "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.557 1.512 0.045 0.007 N 5 1 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.567 1.512 0.055 0.007 N 6 1 "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 1.561 1.512 0.049 0.007 N 7 1 "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.557 1.512 0.045 0.007 N 8 1 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.575 1.512 0.063 0.007 N 9 1 N9 B DA 14 ? ? C4 B DA 14 ? ? 1.413 1.374 0.039 0.006 N 10 1 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.565 1.512 0.053 0.007 N 11 1 "C2'" B DC 16 ? ? "C1'" B DC 16 ? ? 1.580 1.519 0.061 0.010 N 12 1 "C5'" B DC 17 ? ? "C4'" B DC 17 ? ? 1.555 1.512 0.043 0.007 N 13 2 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.557 1.512 0.045 0.007 N 14 2 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 1.558 1.512 0.046 0.007 N 15 2 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.425 1.374 0.051 0.006 N 16 2 N1 A DT 5 ? ? C2 A DT 5 ? ? 1.427 1.376 0.051 0.008 N 17 2 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.574 1.512 0.062 0.007 N 18 2 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 1.592 1.518 0.074 0.012 N 19 2 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.580 1.512 0.068 0.007 N 20 2 "C3'" B DT 15 ? ? "C2'" B DT 15 ? ? 1.603 1.518 0.085 0.012 N 21 2 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.559 1.512 0.047 0.007 N 22 2 "C5'" B DC 17 ? ? "C4'" B DC 17 ? ? 1.564 1.512 0.052 0.007 N 23 2 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.562 1.512 0.050 0.007 N 24 3 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.555 1.512 0.043 0.007 N 25 3 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 1.600 1.518 0.082 0.012 N 26 3 N9 A DG 3 ? ? C4 A DG 3 ? ? 1.425 1.375 0.050 0.008 N 27 3 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.574 1.512 0.062 0.007 N 28 3 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.557 1.512 0.045 0.007 N 29 3 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.561 1.512 0.049 0.007 N 30 3 N9 B DA 14 ? ? C4 B DA 14 ? ? 1.413 1.374 0.039 0.006 N 31 3 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.562 1.512 0.050 0.007 N 32 3 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.554 1.512 0.042 0.007 N 33 4 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.427 1.375 0.052 0.008 N 34 4 N1 A DT 5 ? ? C2 A DT 5 ? ? 1.432 1.376 0.056 0.008 N 35 4 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.404 1.367 0.037 0.006 N 36 4 N9 B DA 14 ? ? C4 B DA 14 ? ? 1.416 1.374 0.042 0.006 N 37 4 N1 B DC 16 ? ? C6 B DC 16 ? ? 1.404 1.367 0.037 0.006 N 38 4 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.559 1.512 0.047 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.05 108.30 4.75 0.30 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.13 118.90 4.23 0.60 N 3 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.38 121.90 -4.52 0.70 N 4 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 130.96 119.70 11.26 1.20 Y 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 103.56 108.00 -4.44 0.70 N 6 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 124.71 119.90 4.81 0.70 N 7 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 130.12 119.70 10.42 1.20 Y 8 1 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 133.04 120.90 12.14 1.60 N 9 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 124.69 119.90 4.79 0.70 N 10 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DA 4 ? ? 134.39 119.70 14.69 1.20 Y 11 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.67 108.00 -4.33 0.70 N 12 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DT 5 ? ? 141.72 119.70 22.02 1.20 Y 13 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 102.01 108.00 -5.99 0.70 N 14 1 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DC 6 ? ? 130.22 119.70 10.52 1.20 Y 15 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.75 118.90 4.85 0.60 N 16 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.16 121.90 -4.74 0.70 N 17 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DC 7 ? ? 135.80 119.70 16.10 1.20 Y 18 1 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.96 118.90 4.06 0.60 N 19 1 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 117.44 121.90 -4.46 0.70 N 20 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DG 8 ? ? 140.09 119.70 20.39 1.20 Y 21 1 P A DG 8 ? ? "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? 130.90 120.90 10.00 1.60 N 22 1 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 125.35 119.90 5.45 0.70 N 23 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 130.11 119.70 10.41 1.20 Y 24 1 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 130.59 120.90 9.69 1.60 N 25 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 140.39 119.70 20.69 1.20 Y 26 1 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 136.30 120.90 15.40 1.60 N 27 1 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DA 14 ? ? 132.50 119.70 12.80 1.20 Y 28 1 P B DA 14 ? ? "O5'" B DA 14 ? ? "C5'" B DA 14 ? ? 139.39 120.90 18.49 1.60 N 29 1 "C3'" B DA 14 ? ? "O3'" B DA 14 ? ? P B DT 15 ? ? 132.43 119.70 12.73 1.20 Y 30 1 N3 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 118.43 122.30 -3.87 0.60 N 31 1 "C3'" B DT 15 ? ? "O3'" B DT 15 ? ? P B DC 16 ? ? 128.99 119.70 9.29 1.20 Y 32 1 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 123.39 118.90 4.49 0.60 N 33 1 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DC 17 ? ? 128.51 119.70 8.81 1.20 Y 34 1 P B DC 17 ? ? "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? 137.22 120.90 16.32 1.60 N 35 1 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 123.58 118.90 4.68 0.60 N 36 1 N3 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 117.45 121.90 -4.45 0.70 N 37 1 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 134.58 119.70 14.88 1.20 Y 38 1 P B DG 18 ? ? "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? 136.85 120.90 15.95 1.60 N 39 1 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 126.16 119.90 6.26 0.70 N 40 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.61 108.30 5.31 0.30 N 41 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.95 118.90 4.05 0.60 N 42 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.65 121.90 -4.25 0.70 N 43 2 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 132.63 119.70 12.93 1.20 Y 44 2 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 124.38 119.90 4.48 0.70 N 45 2 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 128.74 119.70 9.04 1.20 Y 46 2 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 131.21 120.90 10.31 1.60 N 47 2 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.57 106.40 -2.83 0.40 N 48 2 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 124.58 119.90 4.68 0.70 N 49 2 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 124.52 128.60 -4.08 0.60 N 50 2 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DA 4 ? ? 131.99 119.70 12.29 1.20 Y 51 2 P A DA 4 ? ? "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? 133.29 120.90 12.39 1.60 N 52 2 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DT 5 ? ? 139.76 119.70 20.06 1.20 Y 53 2 P A DT 5 ? ? "O5'" A DT 5 ? ? "C5'" A DT 5 ? ? 135.87 120.90 14.97 1.60 N 54 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 102.35 108.00 -5.65 0.70 N 55 2 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 117.89 122.30 -4.41 0.60 N 56 2 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DC 6 ? ? 134.05 119.70 14.35 1.20 Y 57 2 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.68 118.90 4.78 0.60 N 58 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.12 121.90 -4.78 0.70 N 59 2 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DC 7 ? ? 132.84 119.70 13.14 1.20 Y 60 2 P A DC 7 ? ? "O5'" A DC 7 ? ? "C5'" A DC 7 ? ? 131.26 120.90 10.36 1.60 N 61 2 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 108.70 103.10 5.60 0.90 N 62 2 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.91 118.90 4.01 0.60 N 63 2 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.72 121.90 -5.18 0.70 N 64 2 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DG 8 ? ? 132.01 119.70 12.31 1.20 Y 65 2 P A DG 8 ? ? "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? 130.78 120.90 9.88 1.60 N 66 2 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 124.25 119.90 4.35 0.70 N 67 2 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 117.66 120.30 -2.64 0.40 N 68 2 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.64 118.90 3.74 0.60 N 69 2 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 116.94 121.90 -4.96 0.70 N 70 2 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 129.37 119.70 9.67 1.20 Y 71 2 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 134.49 120.90 13.59 1.60 N 72 2 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 114.95 111.90 3.05 0.50 N 73 2 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 140.72 119.70 21.02 1.20 Y 74 2 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 136.16 120.90 15.26 1.60 N 75 2 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DA 14 ? ? 141.10 119.70 21.40 1.20 Y 76 2 P B DA 14 ? ? "O5'" B DA 14 ? ? "C5'" B DA 14 ? ? 133.45 120.90 12.55 1.60 N 77 2 "C3'" B DA 14 ? ? "O3'" B DA 14 ? ? P B DT 15 ? ? 132.69 119.70 12.99 1.20 Y 78 2 "C3'" B DT 15 ? ? "O3'" B DT 15 ? ? P B DC 16 ? ? 127.98 119.70 8.28 1.20 Y 79 2 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 122.58 118.90 3.68 0.60 N 80 2 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 117.12 121.90 -4.78 0.70 N 81 2 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DC 17 ? ? 129.78 119.70 10.08 1.20 Y 82 2 P B DC 17 ? ? "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? 136.91 120.90 16.01 1.60 N 83 2 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 123.47 118.90 4.57 0.60 N 84 2 N3 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 117.45 121.90 -4.45 0.70 N 85 2 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 129.45 119.70 9.75 1.20 Y 86 2 P B DG 18 ? ? "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? 133.86 120.90 12.96 1.60 N 87 2 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.74 119.90 4.84 0.70 N 88 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.32 108.30 6.02 0.30 N 89 3 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.36 118.90 4.46 0.60 N 90 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.44 121.90 -4.46 0.70 N 91 3 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 130.88 119.70 11.18 1.20 Y 92 3 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 129.02 119.70 9.32 1.20 Y 93 3 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 124.19 119.90 4.29 0.70 N 94 3 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DA 4 ? ? 143.89 119.70 24.19 1.20 Y 95 3 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DT 5 ? ? 139.97 119.70 20.27 1.20 Y 96 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 102.23 108.00 -5.77 0.70 N 97 3 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.65 122.30 -3.65 0.60 N 98 3 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DC 6 ? ? 131.59 119.70 11.89 1.20 Y 99 3 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.33 118.90 4.43 0.60 N 100 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.24 121.90 -4.66 0.70 N 101 3 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DC 7 ? ? 139.38 119.70 19.68 1.20 Y 102 3 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DG 8 ? ? 140.98 119.70 21.28 1.20 Y 103 3 P A DG 8 ? ? "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? 136.19 120.90 15.29 1.60 N 104 3 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 125.60 119.90 5.70 0.70 N 105 3 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.01 118.90 4.11 0.60 N 106 3 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 130.11 119.70 10.41 1.20 Y 107 3 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 134.92 120.90 14.02 1.60 N 108 3 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 143.17 119.70 23.47 1.20 Y 109 3 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 133.70 120.90 12.80 1.60 N 110 3 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DA 14 ? ? 131.93 119.70 12.23 1.20 Y 111 3 P B DA 14 ? ? "O5'" B DA 14 ? ? "C5'" B DA 14 ? ? 141.78 120.90 20.88 1.60 N 112 3 "C3'" B DA 14 ? ? "O3'" B DA 14 ? ? P B DT 15 ? ? 131.88 119.70 12.18 1.20 Y 113 3 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 123.57 118.90 4.67 0.60 N 114 3 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 117.11 121.90 -4.79 0.70 N 115 3 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DC 17 ? ? 129.11 119.70 9.41 1.20 Y 116 3 P B DC 17 ? ? "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? 135.08 120.90 14.18 1.60 N 117 3 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 135.28 119.70 15.58 1.20 Y 118 3 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 124.85 119.90 4.95 0.70 N 119 3 C5 B DG 18 ? ? C6 B DG 18 ? ? O6 B DG 18 ? ? 124.53 128.60 -4.07 0.60 N 120 4 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 117.50 120.30 -2.80 0.40 N 121 4 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.37 118.90 4.47 0.60 N 122 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.02 121.90 -4.88 0.70 N 123 4 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 135.97 120.90 15.07 1.60 N 124 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.81 108.30 2.51 0.30 N 125 4 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.97 106.40 -2.43 0.40 N 126 4 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 125.79 119.90 5.89 0.70 N 127 4 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 130.54 119.70 10.84 1.20 Y 128 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.34 108.30 3.04 0.30 N 129 4 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 125.04 119.90 5.14 0.70 N 130 4 P A DA 4 ? ? "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? 135.34 120.90 14.44 1.60 N 131 4 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DT 5 ? ? 134.60 119.70 14.90 1.20 Y 132 4 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.12 122.30 -4.18 0.60 N 133 4 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.93 118.90 5.03 0.60 N 134 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.02 121.90 -4.88 0.70 N 135 4 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DC 7 ? ? 152.47 119.70 32.77 1.20 Y 136 4 C6 A DC 7 ? ? N1 A DC 7 ? ? C2 A DC 7 ? ? 117.49 120.30 -2.81 0.40 N 137 4 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 123.49 118.90 4.59 0.60 N 138 4 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 117.00 121.90 -4.90 0.70 N 139 4 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 124.46 119.90 4.56 0.70 N 140 4 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.28 118.90 4.38 0.60 N 141 4 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 117.26 121.90 -4.64 0.70 N 142 4 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DG 12 ? ? 130.73 119.70 11.03 1.20 Y 143 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.42 108.30 2.12 0.30 N 144 4 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 124.52 119.90 4.62 0.70 N 145 4 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 152.59 119.70 32.89 1.20 Y 146 4 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 139.64 120.90 18.74 1.60 N 147 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.59 108.30 3.29 0.30 N 148 4 N3 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 124.41 119.90 4.51 0.70 N 149 4 P B DA 14 ? ? "O5'" B DA 14 ? ? "C5'" B DA 14 ? ? 136.21 120.90 15.31 1.60 N 150 4 "C3'" B DA 14 ? ? "O3'" B DA 14 ? ? P B DT 15 ? ? 142.06 119.70 22.36 1.20 Y 151 4 P B DC 16 ? ? "O5'" B DC 16 ? ? "C5'" B DC 16 ? ? 135.32 120.90 14.42 1.60 N 152 4 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 103.20 108.00 -4.80 0.70 N 153 4 C6 B DC 16 ? ? N1 B DC 16 ? ? C2 B DC 16 ? ? 117.32 120.30 -2.98 0.40 N 154 4 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 123.49 118.90 4.59 0.60 N 155 4 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 117.24 121.90 -4.66 0.70 N 156 4 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DC 17 ? ? 111.02 119.70 -8.68 1.20 Y 157 4 P B DC 17 ? ? "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? 140.30 120.90 19.40 1.60 N 158 4 C6 B DC 17 ? ? N1 B DC 17 ? ? C2 B DC 17 ? ? 117.67 120.30 -2.63 0.40 N 159 4 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 123.94 118.90 5.04 0.60 N 160 4 N3 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 116.70 121.90 -5.20 0.70 N 161 4 P B DG 18 ? ? "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? 135.18 120.90 14.28 1.60 N 162 4 N3 B DG 18 ? ? C2 B DG 18 ? ? N2 B DG 18 ? ? 125.28 119.90 5.38 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.116 'SIDE CHAIN' 2 1 DG A 3 ? ? 0.076 'SIDE CHAIN' 3 1 DT A 5 ? ? 0.068 'SIDE CHAIN' 4 1 DG A 8 ? ? 0.083 'SIDE CHAIN' 5 1 DC B 11 ? ? 0.085 'SIDE CHAIN' 6 1 DA B 14 ? ? 0.064 'SIDE CHAIN' 7 2 DC A 1 ? ? 0.065 'SIDE CHAIN' 8 2 DG A 3 ? ? 0.079 'SIDE CHAIN' 9 2 DC A 6 ? ? 0.091 'SIDE CHAIN' 10 2 DC A 7 ? ? 0.117 'SIDE CHAIN' 11 2 DC B 11 ? ? 0.118 'SIDE CHAIN' 12 2 DA B 14 ? ? 0.115 'SIDE CHAIN' 13 3 DC A 1 ? ? 0.143 'SIDE CHAIN' 14 3 DA A 4 ? ? 0.074 'SIDE CHAIN' 15 3 DT A 5 ? ? 0.133 'SIDE CHAIN' 16 3 DC A 6 ? ? 0.082 'SIDE CHAIN' 17 3 DC A 7 ? ? 0.131 'SIDE CHAIN' 18 3 DC B 11 ? ? 0.081 'SIDE CHAIN' 19 3 DG B 12 ? ? 0.063 'SIDE CHAIN' 20 3 DA B 14 ? ? 0.096 'SIDE CHAIN' 21 4 DA A 4 ? ? 0.059 'SIDE CHAIN' 22 4 DC A 6 ? ? 0.083 'SIDE CHAIN' 23 4 DG A 8 ? ? 0.062 'SIDE CHAIN' 24 4 DC B 11 ? ? 0.088 'SIDE CHAIN' 25 4 DA B 14 ? ? 0.093 'SIDE CHAIN' 26 4 DC B 16 ? ? 0.076 'SIDE CHAIN' 27 4 DC B 17 ? ? 0.122 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1PIK 'double helix' 1PIK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 8 1_555 1.136 -0.362 0.378 -8.457 5.775 -2.846 1 A_DC1:DG18_B A 1 ? B 18 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.296 -0.108 0.123 14.246 -1.669 -5.216 2 A_DG2:DC17_B A 2 ? B 17 ? 19 1 1 A DG 3 1_555 B DC 6 1_555 0.070 0.058 -0.139 -9.037 2.371 -3.424 3 A_DG3:DC16_B A 3 ? B 16 ? 19 1 1 A DA 4 1_555 B DT 5 1_555 -0.151 -0.123 -0.229 10.349 -7.567 -0.598 4 A_DA4:DT15_B A 4 ? B 15 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 -0.071 -0.150 0.409 0.453 -18.942 -4.556 5 A_DT5:DA14_B A 5 ? B 14 ? 20 1 1 A DC 6 1_555 B DG 3 1_555 0.230 -0.084 -0.061 -0.564 -8.086 -2.860 6 A_DC6:DG13_B A 6 ? B 13 ? 19 1 1 A DC 7 1_555 B DG 2 1_555 0.182 -0.080 0.406 12.495 -16.834 -1.576 7 A_DC7:DG12_B A 7 ? B 12 ? 19 1 1 A DG 8 1_555 B DC 1 1_555 -0.635 -0.509 -1.540 -8.542 -19.814 7.344 8 A_DG8:DC11_B A 8 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 8 1_555 A DG 2 1_555 B DC 7 1_555 0.260 2.006 3.180 -1.553 6.730 25.789 2.507 -0.988 3.558 14.746 3.402 26.683 1 AA_DC1DG2:DC17DG18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DG 2 1_555 B DC 7 1_555 A DG 3 1_555 B DC 6 1_555 -0.896 2.024 7.137 -0.437 0.234 12.663 8.573 2.944 7.199 1.062 1.981 12.672 2 AA_DG2DG3:DC16DC17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B DC 6 1_555 A DA 4 1_555 B DT 5 1_555 -1.162 0.785 3.071 -1.578 7.694 36.291 0.233 1.621 3.211 12.177 2.497 37.103 3 AA_DG3DA4:DT15DC16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 -0.878 0.014 3.761 -5.792 -9.171 39.942 1.171 0.516 3.755 -13.135 8.294 41.331 4 AA_DA4DT5:DA14DT15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DT 5 1_555 B DA 4 1_555 A DC 6 1_555 B DG 3 1_555 0.628 1.164 3.530 3.177 -6.841 39.571 2.511 -0.532 3.331 -9.994 -4.642 40.255 5 AA_DT5DC6:DG13DA14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DC 6 1_555 B DG 3 1_555 A DC 7 1_555 B DG 2 1_555 -0.254 0.428 3.489 -6.715 0.476 32.618 0.662 -0.761 3.477 0.837 11.800 33.287 6 AA_DC6DC7:DG12DG13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DC 7 1_555 B DG 2 1_555 A DG 8 1_555 B DC 1 1_555 1.683 0.854 4.687 10.652 -6.150 38.778 2.246 -0.666 4.784 -8.991 -15.573 40.611 7 AA_DC7DG8:DC11DG12_BB A 7 ? B 12 ? A 8 ? B 11 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DAG 1 C DAG 1 ? DAG 21 n C 2 MAT 2 C MAT 2 ? MAT 23 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-6-deoxy-Glcp4N DLF 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-2-deoxy-Fucp # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a2122m-1b_1-5_4*N][ad21h-1a_1-5_3*OC_4*NCC/3C]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-6-deoxy-Glcp4N]{[(2+1)][a-L-2-deoxy-Xylp3Me4N]{[(4+1)][<C3>]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 MAT _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 DAG _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DAG 1 n 2 MAT 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) ; DPA 4 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose TMR 5 2-deoxy-alpha-L-fucopyranose DLF 6 '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' MTC #